Wall clock time and date at job start Tue Mar 31 2020 11:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 5 5 C 1.52998 * 109.47384 * 185.00170 * 4 2 1 6 6 H 1.09004 * 109.46526 * 304.99490 * 5 4 2 7 7 C 1.52999 * 109.47036 * 184.99951 * 5 4 2 8 8 N 1.46496 * 109.47164 * 64.99625 * 5 4 2 9 9 C 1.34779 * 119.99550 * 205.00192 * 8 5 4 10 10 O 1.21648 * 120.00497 * 0.02562 * 9 8 5 11 11 C 1.47047 * 119.99548 * 180.02562 * 9 8 5 12 12 C 1.44510 * 123.49582 * 0.02562 * 11 9 8 13 13 C 1.32690 * 113.09862 * 179.97438 * 12 11 9 14 14 S 1.75493 * 110.63358 * 359.97438 * 13 12 11 15 15 C 1.36225 * 123.49012 * 179.70326 * 11 9 8 16 16 Cl 1.73604 * 124.60694 * 0.02562 * 15 11 9 17 17 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 18 18 C 1.36935 * 120.00239 * 84.99640 * 17 2 1 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 2 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 27 27 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 29 29 H 1.08997 * 109.46795 * 304.99831 * 4 2 1 30 30 H 1.08999 * 109.47341 * 64.99651 * 4 2 1 31 31 H 1.09003 * 109.47191 * 179.97438 * 7 5 4 32 32 H 1.08996 * 109.47126 * 299.99873 * 7 5 4 33 33 H 1.09004 * 109.47346 * 59.99769 * 7 5 4 34 34 H 0.96994 * 120.00193 * 25.00319 * 8 5 4 35 35 H 1.07996 * 123.44350 * 359.95096 * 12 11 9 36 36 H 1.08007 * 124.67662 * 179.97438 * 13 12 11 37 37 H 0.97004 * 119.99747 * 265.00379 * 17 2 1 38 38 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9953 -0.9923 0.3867 7 6 4.0851 -1.4383 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0865 10 8 5.9379 0.4317 0.5714 11 6 5.5459 2.6213 1.2664 12 6 4.6842 3.6129 1.8685 13 6 5.2386 4.8169 1.9284 14 16 6.8546 4.7884 1.2447 15 6 6.7541 3.1246 0.8885 16 17 8.0184 2.1979 0.1424 17 7 2.0183 -0.6906 -1.1962 18 6 2.1490 -0.0075 -2.3758 19 1 1.8925 1.0405 -2.4242 20 6 2.6112 -0.6619 -3.5093 21 7 2.9290 -1.9378 -3.4489 22 14 2.7902 0.2701 -5.1183 23 1 1.5246 0.1742 -5.8892 24 1 3.0895 1.6964 -4.8334 25 1 3.8987 -0.3195 -5.9112 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6054 -0.2617 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 5.1715 -1.3617 2.5381 32 1 3.6546 -1.0593 3.4193 33 1 3.8001 -2.4819 2.3594 34 1 3.3285 1.4129 1.9027 35 1 3.6907 3.3961 2.2321 36 1 4.7611 5.6934 2.3411 37 1 2.2489 -1.6318 -1.1526 38 1 2.8364 -2.4217 -2.6134 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135614467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:27 Heat of formation + Delta-G solvation = -27.877486 kcal Electronic energy + Delta-G solvation = -22303.628315 eV Core-core repulsion = 18911.872231 eV Total energy + Delta-G solvation = -3391.756084 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07809 -38.77526 -37.97763 -37.43047 -36.23619 -34.15494 -32.10638 -30.52617 -30.15585 -27.67612 -26.17149 -25.51506 -22.97008 -22.22639 -21.36426 -20.62484 -19.55690 -19.38204 -17.79382 -17.15597 -16.71378 -16.19980 -16.05471 -15.59469 -15.43333 -14.94247 -14.76374 -14.64134 -14.46427 -14.22843 -14.00545 -13.56087 -13.43353 -13.14007 -12.91496 -12.75871 -12.62214 -12.56012 -12.18050 -12.12040 -12.02385 -11.94002 -11.86426 -11.57217 -11.18116 -10.91351 -10.82522 -10.09948 -9.84194 -9.51343 -9.04373 -8.34475 -5.25507 -0.48954 0.00158 0.69929 0.95003 1.18854 1.50900 1.63101 1.75618 2.24669 2.37076 2.70301 3.44466 3.67273 3.74320 3.86767 3.97081 4.04382 4.24674 4.31271 4.47468 4.61065 4.70138 4.72090 4.76963 4.85847 4.93786 4.95778 5.02464 5.10309 5.17780 5.27420 5.35885 5.55359 5.57845 5.65530 6.53866 6.59837 7.16327 7.30583 8.07168 8.17816 9.17983 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011160 B = 0.004852 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.460088 B = 5769.421892 C = 6746.067131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.042 0.958 4 C -0.118 4.118 5 C 0.149 3.851 6 H 0.042 0.958 7 C -0.150 4.150 8 N -0.695 5.695 9 C 0.561 3.439 10 O -0.569 6.569 11 C -0.169 4.169 12 C -0.110 4.110 13 C -0.206 4.206 14 S 0.267 5.733 15 C -0.159 4.159 16 Cl -0.010 7.010 17 N -0.743 5.743 18 C -0.312 4.312 19 H 0.060 0.940 20 C -0.110 4.110 21 N -0.980 5.980 22 Si 1.119 2.881 23 H -0.280 1.280 24 H -0.278 1.278 25 H -0.298 1.298 26 H 0.027 0.973 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.411 0.589 35 H 0.183 0.817 36 H 0.219 0.781 37 H 0.356 0.644 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 16.450 19.033 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.061 3.939 3 H 0.060 0.940 4 C -0.156 4.156 5 C 0.044 3.956 6 H 0.060 0.940 7 C -0.208 4.208 8 N -0.348 5.348 9 C 0.347 3.653 10 O -0.449 6.449 11 C -0.189 4.189 12 C -0.138 4.138 13 C -0.341 4.341 14 S 0.531 5.469 15 C -0.306 4.306 16 Cl 0.019 6.981 17 N -0.386 5.386 18 C -0.444 4.444 19 H 0.078 0.922 20 C -0.301 4.301 21 N -0.629 5.629 22 Si 0.946 3.054 23 H -0.207 1.207 24 H -0.204 1.204 25 H -0.225 1.225 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.200 0.800 36 H 0.236 0.764 37 H 0.187 0.813 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.381 17.036 16.820 24.337 hybrid contribution -1.327 -1.756 1.258 2.535 sum 3.054 15.279 18.077 23.866 Atomic orbital electron populations 1.22286 0.97550 1.00806 1.00807 1.20468 0.92661 0.95169 0.85648 0.94040 1.22095 0.92635 1.02247 0.98639 1.20812 0.95603 0.80977 0.98210 0.93999 1.22076 1.00334 1.00197 0.98224 1.45638 1.15760 1.11473 1.61888 1.17928 0.82436 0.87123 0.77794 1.90840 1.52485 1.57077 1.44461 1.20543 0.94941 0.95574 1.07836 1.21288 1.01198 0.90720 1.00614 1.26037 0.97995 1.03007 1.07061 1.82960 1.14173 0.95374 1.54400 1.25726 0.95653 1.01860 1.07350 1.98403 1.47487 1.72637 1.79561 1.42619 1.79447 1.09340 1.07153 1.20253 1.39013 0.94786 0.90309 0.92237 1.26942 1.00333 0.97754 1.05044 1.70943 1.54300 1.09681 1.27943 0.82725 0.76543 0.73717 0.72464 1.20678 1.20353 1.22523 0.95374 0.94027 0.90110 0.87110 0.90563 0.94553 0.89679 0.91170 0.75157 0.80010 0.76394 0.81276 0.94688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.49 71.98 0.68 -4.37 16 2 C 0.17 6.22 2.84 44.99 0.13 6.34 16 3 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 4 C -0.12 -3.31 4.29 30.59 0.13 -3.18 16 5 C 0.15 4.84 2.52 44.99 0.11 4.95 16 6 H 0.04 1.91 7.05 -2.39 -0.02 1.89 16 7 C -0.15 -4.03 9.48 71.98 0.68 -3.34 16 8 N -0.70 -20.41 4.43 -446.16 -1.97 -22.39 16 9 C 0.56 20.15 7.75 86.55 0.67 20.83 16 10 O -0.57 -26.18 14.57 -4.18 -0.06 -26.24 16 11 C -0.17 -4.79 5.98 -19.84 -0.12 -4.90 16 12 C -0.11 -1.93 9.90 22.70 0.22 -1.71 16 13 C -0.21 -2.60 11.11 66.65 0.74 -1.86 16 14 S 0.27 4.53 23.02 -56.49 -1.30 3.23 16 15 C -0.16 -4.46 6.87 67.35 0.46 -4.00 16 16 Cl -0.01 -0.32 27.20 -2.72 -0.07 -0.39 16 17 N -0.74 -37.52 4.49 -322.95 -1.45 -38.97 16 18 C -0.31 -18.05 9.93 84.03 0.83 -17.22 16 19 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 20 C -0.11 -6.71 5.50 84.86 0.47 -6.25 16 21 N -0.98 -64.65 13.70 21.65 0.30 -64.36 16 22 Si 1.12 55.74 29.92 68.60 2.05 57.79 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 26 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.41 8.60 7.15 -92.71 -0.66 7.93 16 35 H 0.18 2.01 7.10 -2.91 -0.02 1.99 16 36 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 37 H 0.36 19.19 6.63 -92.71 -0.61 18.57 16 38 H 0.24 15.96 6.77 -92.71 -0.63 15.34 16 Total: -1.00 -82.93 347.60 2.47 -80.46 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.04 Total: 25.56 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 5.02 Total: -14.70 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -3.13 Total: -125.71 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 55.74 SS G_CDS: 2.05 Total: 57.79 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.30 Total: 3.23 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.07 Total: -0.39 kcal Total: -82.93 2.47 -80.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135614467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.582 kcal (2) G-P(sol) polarization free energy of solvation -82.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds