Wall clock time and date at job start Tue Mar 31 2020 11:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 H 1.09000 * 109.46953 * 54.99872 * 5 4 2 7 7 C 1.53001 * 109.47239 * 175.00020 * 5 4 2 8 8 N 1.46500 * 109.46937 * 295.00311 * 5 4 2 9 9 C 1.34770 * 120.00009 * 154.99831 * 8 5 4 10 10 O 1.21654 * 120.00085 * 359.97438 * 9 8 5 11 11 C 1.47048 * 120.00032 * 179.97438 * 9 8 5 12 12 C 1.44507 * 123.49099 * 359.73203 * 11 9 8 13 13 C 1.32693 * 113.09544 * 179.80440 * 12 11 9 14 14 S 1.75491 * 110.63334 * 0.44370 * 13 12 11 15 15 C 1.36224 * 123.49191 * 180.02562 * 11 9 8 16 16 Cl 1.73601 * 124.60701 * 359.96203 * 15 11 9 17 17 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 18 18 C 1.36931 * 119.99788 * 274.99780 * 17 2 1 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 2 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 2 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 27 27 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 28 28 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 30 30 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 31 31 H 1.08998 * 109.47096 * 179.97438 * 7 5 4 32 32 H 1.09003 * 109.46930 * 300.00039 * 7 5 4 33 33 H 1.09004 * 109.46844 * 60.00283 * 7 5 4 34 34 H 0.97001 * 119.99738 * 334.99867 * 8 5 4 35 35 H 1.07994 * 123.45085 * 359.97438 * 12 11 9 36 36 H 1.08000 * 124.68117 * 180.14267 * 13 12 11 37 37 H 0.97000 * 119.99792 * 94.99575 * 17 2 1 38 38 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 1 3.9954 -0.9924 -0.3866 7 6 4.0852 -1.4386 -2.4923 8 7 3.9481 0.7892 -1.4923 9 6 5.1613 1.2132 -1.0865 10 8 5.9380 0.4314 -0.5714 11 6 5.5462 2.6210 -1.2665 12 6 4.6864 3.6114 -1.8732 13 6 5.2387 4.8167 -1.9280 14 16 6.8546 4.7882 -1.2442 15 6 6.7523 3.1254 -0.8837 16 17 8.0136 2.2004 -0.1305 17 7 2.0183 -0.6906 1.1963 18 6 2.1491 -0.0075 2.3757 19 1 1.8919 1.0404 2.4243 20 6 2.6062 -0.6633 3.5106 21 7 2.9191 -1.9403 3.4515 22 14 2.7773 0.2668 5.1216 23 1 1.4532 0.8035 5.5263 24 1 3.2816 -0.6527 6.1728 25 1 3.7337 1.3892 4.9460 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7516 -1.7716 -1.2055 30 1 1.6055 -0.2618 -2.1369 31 1 5.1715 -1.3614 -2.5384 32 1 3.8001 -2.4822 -2.3592 33 1 3.6547 -1.0596 -3.4192 34 1 3.3286 1.4126 -1.9027 35 1 3.6949 3.3936 -2.2417 36 1 4.7615 5.6931 -2.3412 37 1 2.2489 -1.6318 1.1527 38 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135614468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:31 Heat of formation + Delta-G solvation = -4.128719 kcal Electronic energy + Delta-G solvation = -22259.054509 eV Core-core repulsion = 18868.328249 eV Total energy + Delta-G solvation = -3390.726260 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.76790 -37.49761 -36.56871 -36.33094 -34.38650 -32.09620 -30.70747 -29.58549 -28.54907 -26.30010 -25.04604 -23.54785 -21.90561 -20.80170 -19.67989 -19.44043 -18.55154 -17.17238 -16.65038 -15.79411 -14.92052 -14.87074 -14.38656 -14.07991 -13.92060 -13.72542 -13.51489 -13.34875 -13.03334 -12.82781 -12.61487 -12.10224 -11.96033 -11.69780 -11.59586 -11.56614 -11.30401 -11.00295 -10.89180 -10.77024 -10.56570 -10.37629 -10.19935 -9.86053 -9.56324 -9.44936 -8.96404 -8.82017 -8.76491 -8.53793 -6.86466 -5.67292 -2.94949 0.51026 0.89803 1.55741 1.85953 2.17723 3.49516 3.51609 3.54538 3.54898 3.63812 4.59403 4.67461 4.90537 5.05405 5.20710 5.44515 5.49663 5.57701 5.67360 5.67837 5.74674 5.91285 5.93547 5.99316 6.05387 6.17620 6.32887 6.40679 6.48274 6.61104 6.76860 6.86142 6.97901 7.11274 7.77169 7.84919 8.51072 8.59747 9.62426 10.19769 10.53947 11.55433 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.004841 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.108042 B = 5782.787145 C = 6765.665927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.145 3.855 6 H 0.107 0.893 7 C -0.160 4.160 8 N -0.709 5.709 9 C 0.572 3.428 10 O -0.513 6.513 11 C -0.145 4.145 12 C -0.099 4.099 13 C -0.228 4.228 14 S 0.211 5.789 15 C -0.124 4.124 16 Cl 0.022 6.978 17 N -0.719 5.719 18 C -0.234 4.234 19 H 0.066 0.934 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.287 1.287 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.392 0.608 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.383 0.617 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 12.790 -16.459 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.041 3.959 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.360 5.360 9 C 0.356 3.644 10 O -0.388 6.388 11 C -0.164 4.164 12 C -0.128 4.128 13 C -0.363 4.363 14 S 0.474 5.526 15 C -0.270 4.270 16 Cl 0.051 6.949 17 N -0.361 5.361 18 C -0.365 4.365 19 H 0.084 0.916 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.214 1.214 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.226 0.774 35 H 0.173 0.827 36 H 0.193 0.807 37 H 0.217 0.783 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.099 13.311 -15.657 21.437 hybrid contribution -1.285 -0.658 0.690 1.600 sum 4.814 12.653 -14.968 20.182 Atomic orbital electron populations 1.22459 0.99596 1.00781 0.99696 1.20220 0.91506 0.95554 0.86586 0.93669 1.22170 0.93738 1.02240 0.98778 1.21042 0.95052 0.79841 0.99951 0.87512 1.22183 1.01574 1.00153 0.97970 1.45784 1.15985 1.11684 1.62534 1.17297 0.82493 0.85859 0.78714 1.90877 1.50848 1.55249 1.41876 1.20463 0.93676 0.96501 1.05774 1.21130 1.00423 0.91222 1.00054 1.25473 0.99068 1.02323 1.09484 1.83119 1.13592 0.99688 1.56198 1.25258 0.96083 0.99487 1.06206 1.98423 1.46555 1.71433 1.78512 1.42375 1.77966 1.10528 1.05244 1.19093 1.36569 0.93553 0.87279 0.91640 1.24676 1.02252 0.95906 0.97866 1.69633 1.51014 1.08562 1.28766 0.86354 0.77624 0.78762 0.84003 1.21449 1.21726 1.21358 0.92945 0.94778 0.93544 0.90585 0.92113 0.92489 0.91730 0.93207 0.77415 0.82710 0.80749 0.78338 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.17 3.25 2.84 -67.93 -0.19 3.06 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16 5 C 0.15 2.37 2.52 -67.93 -0.17 2.20 16 6 H 0.11 2.30 7.05 -51.93 -0.37 1.94 16 7 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 8 N -0.71 -10.62 4.43 -55.00 -0.24 -10.87 16 9 C 0.57 10.00 7.75 -12.69 -0.10 9.90 16 10 O -0.51 -11.02 14.57 5.23 0.08 -10.95 16 11 C -0.15 -2.10 5.98 -104.58 -0.63 -2.73 16 12 C -0.10 -1.02 9.90 -39.00 -0.39 -1.41 16 13 C -0.23 -1.95 11.11 28.84 0.32 -1.63 16 14 S 0.21 2.06 23.02 -107.50 -2.47 -0.41 16 15 C -0.12 -1.74 6.87 30.01 0.21 -1.54 16 16 Cl 0.02 0.34 27.20 -51.86 -1.41 -1.07 16 17 N -0.72 -17.79 4.49 -53.42 -0.24 -18.03 16 18 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.82 13.06 55.49 0.72 -28.09 16 22 Si 0.90 23.29 29.55 -169.99 -5.02 18.26 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.39 4.59 7.15 -40.82 -0.29 4.30 16 35 H 0.16 1.19 7.10 -52.49 -0.37 0.82 16 36 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 38 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -33.91 349.30 -9.02 -42.93 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.09 Total: 8.75 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.60 Total: -5.79 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.24 Total: -56.99 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.26 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.47 Total: -0.41 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.41 Total: -1.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.91 -9.02 -42.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135614468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.800 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds