Wall clock time and date at job start Tue Mar 31 2020 11:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 H 1.09000 * 109.46953 * 54.99872 * 5 4 2 7 7 C 1.53001 * 109.47239 * 175.00020 * 5 4 2 8 8 N 1.46500 * 109.46937 * 295.00311 * 5 4 2 9 9 C 1.34770 * 120.00009 * 154.99831 * 8 5 4 10 10 O 1.21654 * 120.00085 * 359.97438 * 9 8 5 11 11 C 1.47048 * 120.00032 * 179.97438 * 9 8 5 12 12 C 1.44507 * 123.49099 * 359.73203 * 11 9 8 13 13 C 1.32693 * 113.09544 * 179.80440 * 12 11 9 14 14 S 1.75491 * 110.63334 * 0.44370 * 13 12 11 15 15 C 1.36224 * 123.49191 * 180.02562 * 11 9 8 16 16 Cl 1.73601 * 124.60701 * 359.96203 * 15 11 9 17 17 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 18 18 C 1.36931 * 119.99788 * 274.99780 * 17 2 1 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 2 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 2 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 27 27 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 28 28 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 30 30 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 31 31 H 1.08998 * 109.47096 * 179.97438 * 7 5 4 32 32 H 1.09003 * 109.46930 * 300.00039 * 7 5 4 33 33 H 1.09004 * 109.46844 * 60.00283 * 7 5 4 34 34 H 0.97001 * 119.99738 * 334.99867 * 8 5 4 35 35 H 1.07994 * 123.45085 * 359.97438 * 12 11 9 36 36 H 1.08000 * 124.68117 * 180.14267 * 13 12 11 37 37 H 0.97000 * 119.99792 * 94.99575 * 17 2 1 38 38 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 1 3.9954 -0.9924 -0.3866 7 6 4.0852 -1.4386 -2.4923 8 7 3.9481 0.7892 -1.4923 9 6 5.1613 1.2132 -1.0865 10 8 5.9380 0.4314 -0.5714 11 6 5.5462 2.6210 -1.2665 12 6 4.6864 3.6114 -1.8732 13 6 5.2387 4.8167 -1.9280 14 16 6.8546 4.7882 -1.2442 15 6 6.7523 3.1254 -0.8837 16 17 8.0136 2.2004 -0.1305 17 7 2.0183 -0.6906 1.1963 18 6 2.1491 -0.0075 2.3757 19 1 1.8919 1.0404 2.4243 20 6 2.6062 -0.6633 3.5106 21 7 2.9191 -1.9403 3.4515 22 14 2.7773 0.2668 5.1216 23 1 1.4532 0.8035 5.5263 24 1 3.2816 -0.6527 6.1728 25 1 3.7337 1.3892 4.9460 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7516 -1.7716 -1.2055 30 1 1.6055 -0.2618 -2.1369 31 1 5.1715 -1.3614 -2.5384 32 1 3.8001 -2.4822 -2.3592 33 1 3.6547 -1.0596 -3.4192 34 1 3.3286 1.4126 -1.9027 35 1 3.6949 3.3936 -2.2417 36 1 4.7615 5.6931 -2.3412 37 1 2.2489 -1.6318 1.1527 38 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135614468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:30 Heat of formation + Delta-G solvation = -27.173733 kcal Electronic energy + Delta-G solvation = -22260.053816 eV Core-core repulsion = 18868.328249 eV Total energy + Delta-G solvation = -3391.725567 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01578 -38.67317 -37.89242 -37.39750 -36.01918 -33.98577 -32.07528 -30.54008 -30.34924 -27.58594 -26.13484 -25.60713 -22.91237 -22.10900 -21.18011 -20.57834 -19.50961 -19.19513 -17.71669 -17.13053 -16.66817 -16.14274 -15.73077 -15.62953 -15.32460 -14.90083 -14.64794 -14.54329 -14.36721 -14.10454 -13.97476 -13.58373 -13.33991 -13.15403 -12.91092 -12.77300 -12.65567 -12.59676 -12.26045 -12.21457 -12.09477 -11.99652 -11.80309 -11.54084 -11.39968 -10.90299 -10.77294 -10.03654 -9.80953 -9.48481 -8.93242 -7.91246 -5.15944 -0.45956 0.02561 0.72543 0.98676 1.21406 1.40766 1.44753 1.49423 2.30321 2.42819 2.56325 3.43234 3.72717 3.85589 4.00290 4.03280 4.13807 4.29544 4.43185 4.57067 4.69345 4.75335 4.81315 4.85536 4.94323 4.98381 5.06317 5.12711 5.13841 5.26204 5.37493 5.45087 5.52498 5.65662 5.69483 6.32010 6.66491 7.36957 7.37753 8.19060 8.37998 9.32465 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.004841 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.108042 B = 5782.787145 C = 6765.665927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.043 0.957 4 C -0.117 4.117 5 C 0.148 3.852 6 H 0.045 0.955 7 C -0.150 4.150 8 N -0.695 5.695 9 C 0.561 3.439 10 O -0.568 6.568 11 C -0.167 4.167 12 C -0.109 4.109 13 C -0.206 4.206 14 S 0.262 5.738 15 C -0.160 4.160 16 Cl -0.011 7.011 17 N -0.731 5.731 18 C -0.224 4.224 19 H 0.069 0.931 20 C -0.079 4.079 21 N -0.969 5.969 22 Si 0.959 3.041 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.287 1.287 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.411 0.589 35 H 0.184 0.816 36 H 0.219 0.781 37 H 0.369 0.631 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 15.850 -19.022 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.061 0.939 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.064 0.936 7 C -0.208 4.208 8 N -0.347 5.347 9 C 0.347 3.653 10 O -0.448 6.448 11 C -0.187 4.187 12 C -0.137 4.137 13 C -0.341 4.341 14 S 0.526 5.474 15 C -0.307 4.307 16 Cl 0.018 6.982 17 N -0.371 5.371 18 C -0.356 4.356 19 H 0.087 0.913 20 C -0.271 4.271 21 N -0.620 5.620 22 Si 0.789 3.211 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.214 1.214 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.201 0.799 36 H 0.236 0.764 37 H 0.201 0.799 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.028 16.444 -18.281 24.916 hybrid contribution -0.688 -1.473 1.363 2.122 sum 3.340 14.971 -16.918 22.836 Atomic orbital electron populations 1.22300 0.97622 1.00833 1.00757 1.20536 0.92674 0.95287 0.85980 0.93859 1.22078 0.92529 1.02286 0.98618 1.20834 0.95723 0.80808 0.98313 0.93639 1.22074 1.00253 1.00237 0.98259 1.45642 1.15685 1.11541 1.61795 1.17907 0.82507 0.87043 0.77869 1.90844 1.52495 1.57043 1.44443 1.20566 0.94941 0.95670 1.07548 1.21304 1.01262 0.90637 1.00514 1.26030 0.97928 1.03020 1.07137 1.82962 1.14265 0.95632 1.54520 1.25713 0.95751 1.01820 1.07372 1.98401 1.47783 1.72744 1.79255 1.42597 1.78198 1.10060 1.06295 1.19452 1.34037 0.93684 0.88423 0.91307 1.25413 1.03697 0.96809 1.01133 1.69791 1.53238 1.10047 1.28971 0.85420 0.77919 0.77342 0.80445 1.19950 1.22389 1.21422 0.95264 0.90274 0.94016 0.90593 0.87251 0.94647 0.91225 0.89785 0.75156 0.79859 0.76433 0.79900 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.49 71.98 0.68 -4.30 16 2 C 0.16 5.92 2.84 44.99 0.13 6.05 16 3 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16 4 C -0.12 -3.27 4.29 30.59 0.13 -3.14 16 5 C 0.15 4.80 2.52 44.99 0.11 4.92 16 6 H 0.05 2.08 7.05 -2.39 -0.02 2.06 16 7 C -0.15 -4.04 9.48 71.98 0.68 -3.36 16 8 N -0.69 -20.16 4.43 -446.15 -1.97 -22.14 16 9 C 0.56 20.01 7.75 86.55 0.67 20.68 16 10 O -0.57 -26.08 14.57 -4.20 -0.06 -26.14 16 11 C -0.17 -4.71 5.98 -19.84 -0.12 -4.83 16 12 C -0.11 -1.89 9.90 22.70 0.22 -1.66 16 13 C -0.21 -2.59 11.11 66.65 0.74 -1.85 16 14 S 0.26 4.48 23.02 -56.49 -1.30 3.18 16 15 C -0.16 -4.48 6.87 67.35 0.46 -4.02 16 16 Cl -0.01 -0.35 27.20 -2.72 -0.07 -0.42 16 17 N -0.73 -36.72 4.49 -322.93 -1.45 -38.17 16 18 C -0.22 -12.75 9.93 84.04 0.83 -11.92 16 19 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 20 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 21 N -0.97 -62.28 13.06 21.65 0.28 -62.00 16 22 Si 0.96 48.95 29.55 68.60 2.03 50.98 16 23 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 25 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 26 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.41 8.41 7.15 -92.71 -0.66 7.74 16 35 H 0.18 1.95 7.10 -2.91 -0.02 1.93 16 36 H 0.22 0.86 8.06 -2.91 -0.02 0.83 16 37 H 0.37 20.34 7.80 -92.71 -0.72 19.62 16 38 H 0.25 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -80.26 349.30 2.18 -78.08 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.29 Total: 24.32 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.02 Total: -7.69 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -3.14 Total: -122.31 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.06 Total: -26.14 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.98 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.30 Total: 3.18 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.07 Total: -0.42 kcal Total: -80.26 2.18 -78.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135614468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.907 kcal (2) G-P(sol) polarization free energy of solvation -80.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds