Wall clock time and date at job start Tue Mar 31 2020 10:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47319 * 2 1 4 4 C 1.53001 * 109.46992 * 240.00511 * 2 1 3 5 5 C 1.53002 * 109.47116 * 176.85990 * 4 2 1 6 6 H 1.08998 * 109.47556 * 54.56733 * 5 4 2 7 7 C 1.53005 * 109.46928 * 294.56495 * 5 4 2 8 8 N 1.46499 * 109.46986 * 174.57022 * 5 4 2 9 9 C 1.36942 * 119.99806 * 205.73708 * 8 5 4 10 10 H 1.08004 * 120.00013 * 4.93396 * 9 8 5 11 11 C 1.38815 * 120.00082 * 184.92513 * 9 8 5 12 12 N 1.31616 * 119.99853 * 183.97547 * 11 9 8 13 13 Si 1.86803 * 120.00024 * 3.97506 * 11 9 8 14 14 H 1.48499 * 109.47088 * 92.53680 * 13 11 9 15 15 H 1.48497 * 109.47423 * 212.53880 * 13 11 9 16 16 H 1.48505 * 109.47070 * 332.54031 * 13 11 9 17 17 N 1.46498 * 109.47076 * 120.00685 * 2 1 3 18 18 C 1.34776 * 120.00042 * 275.18710 * 17 2 1 19 19 O 1.21708 * 119.99556 * 4.58632 * 18 17 2 20 20 C 1.46571 * 120.00416 * 184.58255 * 18 17 2 21 21 C 1.36667 * 125.45551 * 174.80424 * 20 18 17 22 22 C 1.37527 * 113.29008 * 179.73699 * 21 20 18 23 23 Cl 1.73604 * 122.46413 * 180.27709 * 22 21 20 24 24 C 1.33877 * 115.07933 * 0.49264 * 22 21 20 25 25 S 1.70611 * 110.95603 * 359.51848 * 24 22 21 26 26 H 1.09003 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47259 * 299.99679 * 1 2 3 28 28 H 1.09005 * 109.47241 * 59.99505 * 1 2 3 29 29 H 1.09006 * 109.47215 * 296.85368 * 4 2 1 30 30 H 1.09002 * 109.47495 * 56.85792 * 4 2 1 31 31 H 1.08997 * 109.46712 * 60.00472 * 7 5 4 32 32 H 1.09001 * 109.46820 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.47196 * 300.00458 * 7 5 4 34 34 H 0.96996 * 120.00806 * 25.74151 * 8 5 4 35 35 H 0.97005 * 119.99890 * 180.02562 * 12 11 9 36 36 H 0.97003 * 120.00370 * 95.19109 * 17 2 1 37 37 H 1.08006 * 123.35377 * 0.03091 * 21 20 18 38 38 H 1.08000 * 124.52583 * 179.79207 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5679 -0.6531 -1.2895 6 1 3.9738 -1.0461 -0.3574 7 6 4.0092 0.8014 -1.4647 8 7 4.0629 -1.4522 -2.4131 9 6 5.3247 -1.9828 -2.3725 10 1 5.9253 -1.8801 -1.4807 11 6 5.8318 -2.6529 -3.4775 12 7 7.0127 -3.2303 -3.4121 13 14 4.8381 -2.7350 -5.0571 14 1 5.2226 -1.6069 -5.9430 15 1 5.1106 -4.0214 -5.7471 16 1 3.3909 -2.6418 -4.7370 17 7 2.0183 -0.6907 1.1961 18 6 2.1434 -0.0195 2.3581 19 8 1.7727 1.1372 2.4355 20 6 2.7258 -0.6823 3.5284 21 6 2.9970 -0.0824 4.7261 22 6 3.5373 -0.9413 5.6544 23 17 3.9656 -0.4311 7.2576 24 6 3.7130 -2.1986 5.2296 25 16 3.1875 -2.3767 3.6162 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.7234 -1.7639 -1.2217 30 1 1.6314 -0.2408 -2.1384 31 1 3.6409 1.3960 -0.6287 32 1 5.0977 0.8500 -1.4928 33 1 3.6033 1.1945 -2.3968 34 1 3.4971 -1.6055 -3.1858 35 1 7.3672 -3.6982 -4.1843 36 1 2.2516 -1.6312 1.1518 37 1 2.8018 0.9610 4.9252 38 1 4.1276 -2.9952 5.8296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135630314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:59 Heat of formation + Delta-G solvation = -5.952289 kcal Electronic energy + Delta-G solvation = -21572.024283 eV Core-core repulsion = 18181.218946 eV Total energy + Delta-G solvation = -3390.805336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.05993 -38.37002 -37.09880 -36.20472 -34.80600 -32.38538 -31.34616 -29.75377 -29.08203 -26.43306 -25.47974 -23.65461 -22.23501 -20.93066 -19.93572 -19.60126 -18.93217 -17.60167 -16.58458 -16.27085 -15.64278 -15.22522 -14.75219 -14.44722 -14.07972 -13.87231 -13.70123 -13.48147 -13.27990 -13.07667 -12.66085 -12.61749 -12.22805 -12.01199 -11.76753 -11.68794 -11.60498 -11.34359 -11.13753 -11.04053 -10.69222 -10.59296 -10.23660 -10.15259 -10.00388 -9.61696 -9.32687 -9.08346 -8.97036 -8.77066 -7.30050 -5.79982 -3.15551 0.11921 0.93039 1.26980 1.86628 2.21577 2.97480 3.09025 3.33019 3.38191 3.43178 4.46393 4.55924 4.66262 4.81470 4.87444 5.11160 5.23567 5.30477 5.45801 5.52102 5.57694 5.60726 5.67288 5.73264 5.80106 5.91727 6.06555 6.14891 6.20246 6.34949 6.47026 6.51641 6.79586 6.99761 7.36216 7.97650 8.03773 8.39175 9.18552 9.90855 10.11150 11.38295 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.003319 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.181643 B = 8433.111036 C = 9540.464002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.095 0.905 4 C -0.138 4.138 5 C 0.177 3.823 6 H 0.054 0.946 7 C -0.168 4.168 8 N -0.750 5.750 9 C -0.242 4.242 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.933 5.933 13 Si 0.887 3.113 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.278 1.278 17 N -0.713 5.713 18 C 0.593 3.407 19 O -0.528 6.528 20 C -0.256 4.256 21 C -0.055 4.055 22 C -0.061 4.061 23 Cl -0.049 7.049 24 C -0.234 4.234 25 S 0.266 5.734 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.362 0.638 35 H 0.259 0.741 36 H 0.399 0.601 37 H 0.163 0.837 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.241 2.862 17.054 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.113 0.887 4 C -0.177 4.177 5 C 0.068 3.932 6 H 0.072 0.928 7 C -0.228 4.228 8 N -0.394 5.394 9 C -0.372 4.372 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.581 5.581 13 Si 0.718 3.282 14 H -0.212 1.212 15 H -0.219 1.219 16 H -0.205 1.205 17 N -0.364 5.364 18 C 0.378 3.622 19 O -0.406 6.406 20 C -0.377 4.377 21 C -0.088 4.088 22 C -0.101 4.101 23 Cl -0.021 7.021 24 C -0.373 4.373 25 S 0.533 5.467 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.234 0.766 37 H 0.180 0.820 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.260 2.430 16.260 20.508 hybrid contribution -0.179 0.546 0.053 0.577 sum -12.439 2.976 16.313 20.729 Atomic orbital electron populations 1.22184 0.95281 1.02132 1.02515 1.21109 0.93697 0.97870 0.83208 0.88676 1.22268 0.98104 1.00939 0.96392 1.20173 0.90099 0.90750 0.92195 0.92795 1.22470 1.02160 0.98385 0.99788 1.42861 1.15787 1.61718 1.19005 1.19061 0.90145 1.27748 1.00270 0.89335 1.24695 0.96416 1.00307 0.97736 1.69707 1.17980 1.40082 1.30346 0.86515 0.79558 0.77114 0.85014 1.21219 1.21857 1.20487 1.45987 1.66955 1.14036 1.09464 1.16788 0.78055 0.85759 0.81569 1.90831 1.49495 1.16506 1.83750 1.24623 1.14139 0.99193 0.99761 1.20468 0.96808 1.01567 0.89920 1.19526 1.07438 0.93612 0.89556 1.98372 1.91923 1.91061 1.20699 1.25301 1.08693 1.00908 1.02406 1.83399 1.53491 1.04960 1.04851 0.92470 0.92108 0.91460 0.91057 0.90387 0.94068 0.92448 0.93571 0.80511 0.93082 0.76564 0.81989 0.80260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 2 C 0.15 1.80 2.39 -67.93 -0.16 1.64 16 3 H 0.10 1.31 5.95 -51.93 -0.31 1.00 16 4 C -0.14 -1.90 4.42 -26.73 -0.12 -2.02 16 5 C 0.18 3.16 2.91 -67.93 -0.20 2.97 16 6 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 7 C -0.17 -2.92 9.27 37.16 0.34 -2.58 16 8 N -0.75 -16.82 4.90 -53.42 -0.26 -17.09 16 9 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 10 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 11 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 12 N -0.93 -28.73 13.97 55.49 0.78 -27.96 16 13 Si 0.89 21.64 27.94 -169.99 -4.75 16.88 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.27 6.24 56.52 0.35 -5.92 16 17 N -0.71 -8.69 4.37 -55.15 -0.24 -8.93 16 18 C 0.59 7.97 7.73 -12.90 -0.10 7.87 16 19 O -0.53 -8.58 16.52 5.18 0.09 -8.50 16 20 C -0.26 -2.96 6.45 -36.79 -0.24 -3.19 16 21 C -0.05 -0.61 9.89 -40.41 -0.40 -1.01 16 22 C -0.06 -0.61 6.25 -41.37 -0.26 -0.87 16 23 Cl -0.05 -0.46 29.10 -51.86 -1.51 -1.97 16 24 C -0.23 -2.04 10.78 29.20 0.31 -1.73 16 25 S 0.27 2.41 22.17 -107.50 -2.38 0.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.64 6.51 -51.93 -0.34 0.30 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.36 7.99 5.57 -40.82 -0.23 7.76 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.40 4.38 7.68 -40.82 -0.31 4.06 16 37 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -31.86 347.48 -8.75 -40.61 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -4.98 Total: 8.71 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.71 Total: -7.03 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.27 Total: -53.97 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.75 Total: 16.88 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.38 Total: 0.03 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.86 -8.75 -40.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135630314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.654 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds