Wall clock time and date at job start Tue Mar 31 2020 10:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47319 * 2 1 4 4 C 1.53001 * 109.46992 * 240.00511 * 2 1 3 5 5 C 1.53002 * 109.47116 * 176.85990 * 4 2 1 6 6 H 1.08998 * 109.47556 * 54.56733 * 5 4 2 7 7 C 1.53005 * 109.46928 * 294.56495 * 5 4 2 8 8 N 1.46499 * 109.46986 * 174.57022 * 5 4 2 9 9 C 1.36942 * 119.99806 * 205.73708 * 8 5 4 10 10 H 1.08004 * 120.00013 * 4.93396 * 9 8 5 11 11 C 1.38815 * 120.00082 * 184.92513 * 9 8 5 12 12 N 1.31616 * 119.99853 * 183.97547 * 11 9 8 13 13 Si 1.86803 * 120.00024 * 3.97506 * 11 9 8 14 14 H 1.48499 * 109.47088 * 92.53680 * 13 11 9 15 15 H 1.48497 * 109.47423 * 212.53880 * 13 11 9 16 16 H 1.48505 * 109.47070 * 332.54031 * 13 11 9 17 17 N 1.46498 * 109.47076 * 120.00685 * 2 1 3 18 18 C 1.34776 * 120.00042 * 275.18710 * 17 2 1 19 19 O 1.21708 * 119.99556 * 4.58632 * 18 17 2 20 20 C 1.46571 * 120.00416 * 184.58255 * 18 17 2 21 21 C 1.36667 * 125.45551 * 174.80424 * 20 18 17 22 22 C 1.37527 * 113.29008 * 179.73699 * 21 20 18 23 23 Cl 1.73604 * 122.46413 * 180.27709 * 22 21 20 24 24 C 1.33877 * 115.07933 * 0.49264 * 22 21 20 25 25 S 1.70611 * 110.95603 * 359.51848 * 24 22 21 26 26 H 1.09003 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47259 * 299.99679 * 1 2 3 28 28 H 1.09005 * 109.47241 * 59.99505 * 1 2 3 29 29 H 1.09006 * 109.47215 * 296.85368 * 4 2 1 30 30 H 1.09002 * 109.47495 * 56.85792 * 4 2 1 31 31 H 1.08997 * 109.46712 * 60.00472 * 7 5 4 32 32 H 1.09001 * 109.46820 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.47196 * 300.00458 * 7 5 4 34 34 H 0.96996 * 120.00806 * 25.74151 * 8 5 4 35 35 H 0.97005 * 119.99890 * 180.02562 * 12 11 9 36 36 H 0.97003 * 120.00370 * 95.19109 * 17 2 1 37 37 H 1.08006 * 123.35377 * 0.03091 * 21 20 18 38 38 H 1.08000 * 124.52583 * 179.79207 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5679 -0.6531 -1.2895 6 1 3.9738 -1.0461 -0.3574 7 6 4.0092 0.8014 -1.4647 8 7 4.0629 -1.4522 -2.4131 9 6 5.3247 -1.9828 -2.3725 10 1 5.9253 -1.8801 -1.4807 11 6 5.8318 -2.6529 -3.4775 12 7 7.0127 -3.2303 -3.4121 13 14 4.8381 -2.7350 -5.0571 14 1 5.2226 -1.6069 -5.9430 15 1 5.1106 -4.0214 -5.7471 16 1 3.3909 -2.6418 -4.7370 17 7 2.0183 -0.6907 1.1961 18 6 2.1434 -0.0195 2.3581 19 8 1.7727 1.1372 2.4355 20 6 2.7258 -0.6823 3.5284 21 6 2.9970 -0.0824 4.7261 22 6 3.5373 -0.9413 5.6544 23 17 3.9656 -0.4311 7.2576 24 6 3.7130 -2.1986 5.2296 25 16 3.1875 -2.3767 3.6162 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.7234 -1.7639 -1.2217 30 1 1.6314 -0.2408 -2.1384 31 1 3.6409 1.3960 -0.6287 32 1 5.0977 0.8500 -1.4928 33 1 3.6033 1.1945 -2.3968 34 1 3.4971 -1.6055 -3.1858 35 1 7.3672 -3.6982 -4.1843 36 1 2.2516 -1.6312 1.1518 37 1 2.8018 0.9610 4.9252 38 1 4.1276 -2.9952 5.8296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135630314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:59 Heat of formation + Delta-G solvation = -26.278431 kcal Electronic energy + Delta-G solvation = -21572.905690 eV Core-core repulsion = 18181.218946 eV Total energy + Delta-G solvation = -3391.686744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08799 -39.22506 -38.35246 -37.01886 -36.25407 -34.10309 -32.67276 -30.97507 -30.36396 -27.63712 -26.35917 -25.45400 -23.28961 -22.14959 -21.28970 -20.54895 -19.89964 -19.45395 -17.48141 -17.22614 -16.80599 -16.38424 -16.22975 -15.93334 -15.31025 -15.02777 -14.77860 -14.64856 -14.38428 -14.24696 -13.92972 -13.87931 -13.45310 -13.36104 -12.97025 -12.84329 -12.72259 -12.46068 -12.38957 -12.23918 -12.03189 -11.90166 -11.81598 -11.61091 -11.47616 -11.23003 -10.96617 -10.27632 -9.98486 -9.52760 -9.28560 -7.98175 -5.31201 -0.70306 0.17736 0.46488 1.03446 1.40136 1.45047 1.45514 1.52070 1.99447 2.12576 2.52311 3.33608 3.43701 3.65593 3.91960 3.98858 4.10194 4.14093 4.20647 4.44821 4.50535 4.57839 4.64632 4.78667 4.81588 4.90079 4.91932 4.96729 5.05357 5.10356 5.33192 5.38436 5.42716 5.58559 5.82932 6.25870 6.37743 7.03553 7.13522 7.89547 8.09747 9.23379 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.003319 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.181643 B = 8433.111036 C = 9540.464002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 H 0.082 0.918 4 C -0.125 4.125 5 C 0.171 3.829 6 H 0.043 0.957 7 C -0.161 4.161 8 N -0.750 5.750 9 C -0.225 4.225 10 H 0.053 0.947 11 C -0.066 4.066 12 N -0.985 5.985 13 Si 0.956 3.044 14 H -0.287 1.287 15 H -0.299 1.299 16 H -0.243 1.243 17 N -0.709 5.709 18 C 0.592 3.408 19 O -0.563 6.563 20 C -0.285 4.285 21 C -0.056 4.056 22 C -0.076 4.076 23 Cl -0.045 7.045 24 C -0.222 4.222 25 S 0.302 5.698 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.055 0.945 34 H 0.367 0.633 35 H 0.256 0.744 36 H 0.406 0.594 37 H 0.157 0.843 38 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.383 2.371 16.805 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.063 3.937 6 H 0.062 0.938 7 C -0.220 4.220 8 N -0.394 5.394 9 C -0.356 4.356 10 H 0.071 0.929 11 C -0.257 4.257 12 N -0.636 5.636 13 Si 0.784 3.216 14 H -0.214 1.214 15 H -0.226 1.226 16 H -0.168 1.168 17 N -0.360 5.360 18 C 0.379 3.621 19 O -0.444 6.444 20 C -0.406 4.406 21 C -0.090 4.090 22 C -0.116 4.116 23 Cl -0.017 7.017 24 C -0.361 4.361 25 S 0.570 5.430 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.201 0.799 35 H 0.065 0.935 36 H 0.242 0.758 37 H 0.174 0.826 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.454 1.952 16.033 21.675 hybrid contribution 0.550 0.704 0.272 0.934 sum -13.904 2.656 16.305 21.592 Atomic orbital electron populations 1.22112 0.93433 1.03043 1.02751 1.21064 0.95040 0.96885 0.82605 0.90033 1.22124 0.94421 1.02044 0.97707 1.20383 0.93073 0.90063 0.90167 0.93848 1.22357 1.00147 0.98403 1.01129 1.42836 1.14109 1.62018 1.20479 1.18996 0.91477 1.26408 0.98715 0.92862 1.25510 0.97774 1.00815 1.01587 1.69894 1.20423 1.41997 1.31311 0.85388 0.79877 0.76370 0.79952 1.21407 1.22615 1.16762 1.45979 1.66553 1.14296 1.09204 1.17014 0.77529 0.85389 0.82175 1.90803 1.51195 1.18008 1.84426 1.24520 1.15734 1.00947 0.99377 1.20537 0.96660 1.01643 0.90192 1.19518 1.08348 0.93967 0.89758 1.98371 1.91925 1.91122 1.20294 1.25663 1.07013 1.01055 1.02403 1.83262 1.52411 1.02640 1.04726 0.91199 0.93219 0.89900 0.90048 0.88750 0.92271 0.95468 0.92558 0.79859 0.93520 0.75821 0.82581 0.77736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.48 71.98 0.68 -2.22 16 2 C 0.15 3.38 2.39 44.99 0.11 3.49 16 3 H 0.08 2.12 5.95 -2.39 -0.01 2.11 16 4 C -0.12 -3.06 4.42 30.60 0.14 -2.92 16 5 C 0.17 5.86 2.91 44.99 0.13 5.99 16 6 H 0.04 1.58 7.44 -2.39 -0.02 1.57 16 7 C -0.16 -5.42 9.27 71.98 0.67 -4.76 16 8 N -0.75 -32.45 4.90 -322.92 -1.58 -34.03 16 9 C -0.22 -12.29 10.41 84.03 0.87 -11.42 16 10 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 11 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 12 N -0.99 -62.05 13.97 21.65 0.30 -61.75 16 13 Si 0.96 44.00 27.94 68.60 1.92 45.91 16 14 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 15 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.24 -9.66 6.24 99.48 0.62 -9.04 16 17 N -0.71 -16.43 4.37 -446.61 -1.95 -18.38 16 18 C 0.59 15.74 7.73 86.42 0.67 16.41 16 19 O -0.56 -18.47 16.52 -4.38 -0.07 -18.54 16 20 C -0.28 -6.45 6.45 24.08 0.16 -6.29 16 21 C -0.06 -1.24 9.89 21.73 0.22 -1.03 16 22 C -0.08 -1.44 6.25 21.11 0.13 -1.31 16 23 Cl -0.05 -0.81 29.10 -2.72 -0.08 -0.89 16 24 C -0.22 -3.45 10.78 66.83 0.72 -2.73 16 25 S 0.30 5.01 22.17 -56.49 -1.25 3.76 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.06 8.10 -2.39 -0.02 1.05 16 28 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 1.78 6.51 -2.39 -0.02 1.76 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.37 15.06 5.57 -92.71 -0.52 14.55 16 35 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 36 H 0.41 8.27 7.68 -92.71 -0.71 7.56 16 37 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 38 H 0.21 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -69.89 347.48 2.02 -67.86 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.22 Total: 26.14 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 4.96 Total: -10.09 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -3.23 Total: -114.15 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.07 Total: -18.54 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.92 Total: 45.91 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -1.25 Total: 3.76 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -69.89 2.02 -67.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135630314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.586 kcal (2) G-P(sol) polarization free energy of solvation -69.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds