Wall clock time and date at job start Tue Mar 31 2020 11:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47514 * 2 1 4 4 C 1.53004 * 109.47357 * 240.00255 * 2 1 3 5 5 C 1.52998 * 109.47475 * 175.00124 * 4 2 1 6 6 H 1.09008 * 109.46859 * 305.00179 * 5 4 2 7 7 C 1.52996 * 109.47309 * 185.00095 * 5 4 2 8 8 N 1.46500 * 109.47391 * 64.99845 * 5 4 2 9 9 C 1.34773 * 120.00431 * 205.00423 * 8 5 4 10 10 O 1.21723 * 119.99810 * 359.97438 * 9 8 5 11 11 C 1.46463 * 120.00108 * 179.72439 * 9 8 5 12 12 C 1.36696 * 125.44856 * 180.27290 * 11 9 8 13 13 C 1.37398 * 113.31636 * 179.97438 * 12 11 9 14 14 C 1.34016 * 115.07170 * 0.02562 * 13 12 11 15 15 Cl 1.73608 * 124.52939 * 179.97438 * 14 13 12 16 16 S 1.70612 * 110.93697 * 359.74663 * 14 13 12 17 17 N 1.46503 * 109.47223 * 120.00372 * 2 1 3 18 18 C 1.36930 * 119.99719 * 274.99959 * 17 2 1 19 19 H 1.07999 * 120.00602 * 0.02562 * 18 17 2 20 20 C 1.38813 * 119.99991 * 179.97438 * 18 17 2 21 21 N 1.31620 * 120.00043 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46931 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47036 * 119.99930 * 22 20 18 25 25 H 1.48502 * 109.46866 * 240.00010 * 22 20 18 26 26 H 1.09000 * 109.47402 * 300.00138 * 1 2 3 27 27 H 1.09004 * 109.47355 * 59.99680 * 1 2 3 28 28 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46933 * 55.00087 * 4 2 1 30 30 H 1.09001 * 109.46769 * 295.00333 * 4 2 1 31 31 H 1.09004 * 109.47132 * 179.97438 * 7 5 4 32 32 H 1.08994 * 109.47099 * 299.99973 * 7 5 4 33 33 H 1.09003 * 109.47061 * 59.99966 * 7 5 4 34 34 H 0.97000 * 119.99456 * 24.99985 * 8 5 4 35 35 H 1.08004 * 123.34132 * 359.95411 * 12 11 9 36 36 H 1.07993 * 122.46678 * 179.97438 * 13 12 11 37 37 H 0.96999 * 119.99979 * 94.99970 * 17 2 1 38 38 H 0.97000 * 120.00653 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4359 -1.2677 7 6 4.0645 -1.2249 -2.6241 8 7 4.1537 -1.3342 -0.1825 9 6 5.3747 -0.9911 0.2733 10 8 5.9885 -0.0825 -0.2553 11 6 5.9609 -1.7079 1.4081 12 6 7.1836 -1.4505 1.9624 13 6 7.4861 -2.2749 3.0191 14 6 6.5442 -3.1789 3.3219 15 17 6.6708 -4.3392 4.6070 16 16 5.2015 -3.0328 2.2795 17 7 2.0183 -0.6907 1.1961 18 6 2.1491 -0.0076 2.3757 19 1 1.8918 1.0402 2.4244 20 6 2.6113 -0.6621 3.5092 21 7 2.9234 -1.9394 3.4503 22 14 2.7890 0.2695 5.1185 23 1 2.3753 1.6819 4.9211 24 1 1.9279 -0.3592 6.1521 25 1 4.2058 0.2264 5.5615 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6054 -0.2616 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 5.1508 -1.1476 -2.6702 32 1 3.7723 -2.2739 -2.6701 33 1 3.6264 -0.6885 -3.4658 34 1 3.6647 -2.0585 0.2385 35 1 7.8462 -0.6761 1.6050 36 1 8.4149 -2.2005 3.5650 37 1 2.2490 -1.6318 1.1525 38 1 3.2467 -2.3968 4.2422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136112212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:07 Heat of formation + Delta-G solvation = -1.843592 kcal Electronic energy + Delta-G solvation = -22988.155416 eV Core-core repulsion = 19597.528246 eV Total energy + Delta-G solvation = -3390.627170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.29282 -37.34856 -36.64060 -35.79115 -34.27828 -32.47642 -30.91652 -28.91878 -28.36179 -26.41720 -24.30087 -23.92778 -21.75168 -20.38617 -20.07270 -18.72224 -17.93926 -17.44049 -15.92923 -15.40407 -15.02405 -14.76325 -14.43839 -13.93966 -13.78829 -13.32875 -13.14844 -12.96394 -12.70758 -12.61722 -12.23280 -12.15949 -11.93027 -11.75681 -11.70576 -11.18219 -10.97244 -10.91607 -10.84457 -10.68821 -10.45622 -10.36610 -10.10393 -10.03372 -9.84462 -9.33152 -9.20595 -8.47551 -7.95035 -7.85188 -7.00338 -6.05424 -3.21703 1.08898 1.85503 2.55461 2.85867 2.96784 3.33744 3.39752 3.43435 3.74815 4.02217 4.41886 5.01357 5.28965 5.33377 5.42262 5.57650 5.61317 5.80030 5.85629 5.90637 5.93325 5.99151 6.05508 6.13518 6.28845 6.33725 6.43519 6.49230 6.51648 6.71630 6.78034 6.91372 6.92770 7.11390 7.43901 8.08924 8.16134 8.88521 9.22100 9.74162 10.09085 11.10675 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.006815 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.510759 B = 4107.781832 C = 5595.530526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.052 0.948 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.085 0.915 7 C -0.163 4.163 8 N -0.700 5.700 9 C 0.604 3.396 10 O -0.558 6.558 11 C -0.291 4.291 12 C -0.085 4.085 13 C -0.155 4.155 14 C -0.229 4.229 15 Cl -0.043 7.043 16 S 0.414 5.586 17 N -0.714 5.714 18 C -0.187 4.187 19 H 0.074 0.926 20 C -0.028 4.028 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.288 1.288 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.398 0.602 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.378 0.622 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 -3.958 -6.570 7.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.056 3.944 3 H 0.070 0.930 4 C -0.173 4.173 5 C 0.045 3.955 6 H 0.103 0.897 7 C -0.221 4.221 8 N -0.352 5.352 9 C 0.392 3.608 10 O -0.439 6.439 11 C -0.416 4.416 12 C -0.119 4.119 13 C -0.189 4.189 14 C -0.379 4.379 15 Cl -0.015 7.015 16 S 0.685 5.315 17 N -0.355 5.355 18 C -0.318 4.318 19 H 0.092 0.908 20 C -0.222 4.222 21 N -0.552 5.552 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.215 1.215 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.236 0.764 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.214 0.786 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.509 -4.052 -6.827 7.955 hybrid contribution 1.349 0.651 1.843 2.375 sum 1.858 -3.401 -4.984 6.313 Atomic orbital electron populations 1.22385 0.98790 1.00912 1.00168 1.20378 0.91916 0.95923 0.86204 0.93002 1.22225 0.94073 1.01671 0.99352 1.20819 0.92347 0.97398 0.84891 0.89701 1.22212 1.01977 1.00831 0.97113 1.45863 1.17613 1.37751 1.34002 1.16744 0.80789 0.82052 0.81256 1.90722 1.62284 1.30858 1.60002 1.24562 1.01131 1.10055 1.05848 1.20104 0.95776 1.00349 0.95685 1.19597 1.00658 0.97912 1.00696 1.25294 1.03666 1.03975 1.04956 1.98299 1.97864 1.56858 1.48445 1.83907 1.06631 1.23445 1.17472 1.42645 1.76840 1.10383 1.05661 1.19560 1.31346 0.94028 0.86893 0.90757 1.24538 1.03332 0.96207 0.98118 1.69199 1.48506 1.08669 1.28804 0.86103 0.77721 0.78857 0.83737 1.20638 1.21737 1.21515 0.92787 0.94300 0.93453 0.90490 0.91642 0.92226 0.92759 0.92054 0.76425 0.84161 0.85043 0.78640 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.49 37.15 0.35 -2.20 16 2 C 0.16 2.83 2.89 -67.93 -0.20 2.64 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.88 4.43 -26.73 -0.12 -2.00 16 5 C 0.15 2.35 2.57 -67.93 -0.17 2.17 16 6 H 0.08 1.50 7.58 -51.92 -0.39 1.11 16 7 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 8 N -0.70 -12.55 3.80 -55.18 -0.21 -12.76 16 9 C 0.60 12.45 7.74 -12.95 -0.10 12.35 16 10 O -0.56 -12.75 16.50 5.17 0.09 -12.66 16 11 C -0.29 -5.83 6.45 -36.83 -0.24 -6.07 16 12 C -0.09 -1.62 10.01 -40.44 -0.40 -2.03 16 13 C -0.15 -2.77 10.08 -41.37 -0.42 -3.19 16 14 C -0.23 -4.18 6.82 29.25 0.20 -3.98 16 15 Cl -0.04 -0.70 29.27 -51.86 -1.52 -2.22 16 16 S 0.41 7.72 19.17 -107.50 -2.06 5.66 16 17 N -0.71 -14.83 3.84 -53.43 -0.21 -15.03 16 18 C -0.19 -4.50 9.93 -15.06 -0.15 -4.65 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.03 -0.68 5.50 -17.43 -0.10 -0.78 16 21 N -0.90 -21.82 10.12 55.49 0.56 -21.25 16 22 Si 0.90 21.14 29.55 -169.99 -5.02 16.11 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 7.08 5.62 -40.82 -0.23 6.85 16 35 H 0.14 2.54 8.06 -52.48 -0.42 2.12 16 36 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.38 8.00 5.70 -40.82 -0.23 7.76 16 38 H 0.26 6.39 8.21 -40.82 -0.34 6.05 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -26.26 343.22 -9.23 -35.49 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.04 Total: 11.00 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.99 Total: -9.50 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.15 Total: -49.04 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 7.72 SS G_CDS: -2.06 Total: 5.66 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.52 Total: -2.22 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.26 -9.23 -35.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136112212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.647 kcal (2) G-P(sol) polarization free energy of solvation -26.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds