Wall clock time and date at job start Tue Mar 31 2020 11:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47514 * 2 1 4 4 C 1.53004 * 109.47357 * 240.00255 * 2 1 3 5 5 C 1.52998 * 109.47475 * 175.00124 * 4 2 1 6 6 H 1.09008 * 109.46859 * 305.00179 * 5 4 2 7 7 C 1.52996 * 109.47309 * 185.00095 * 5 4 2 8 8 N 1.46500 * 109.47391 * 64.99845 * 5 4 2 9 9 C 1.34773 * 120.00431 * 205.00423 * 8 5 4 10 10 O 1.21723 * 119.99810 * 359.97438 * 9 8 5 11 11 C 1.46463 * 120.00108 * 179.72439 * 9 8 5 12 12 C 1.36696 * 125.44856 * 180.27290 * 11 9 8 13 13 C 1.37398 * 113.31636 * 179.97438 * 12 11 9 14 14 C 1.34016 * 115.07170 * 0.02562 * 13 12 11 15 15 Cl 1.73608 * 124.52939 * 179.97438 * 14 13 12 16 16 S 1.70612 * 110.93697 * 359.74663 * 14 13 12 17 17 N 1.46503 * 109.47223 * 120.00372 * 2 1 3 18 18 C 1.36930 * 119.99719 * 274.99959 * 17 2 1 19 19 H 1.07999 * 120.00602 * 0.02562 * 18 17 2 20 20 C 1.38813 * 119.99991 * 179.97438 * 18 17 2 21 21 N 1.31620 * 120.00043 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46931 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47036 * 119.99930 * 22 20 18 25 25 H 1.48502 * 109.46866 * 240.00010 * 22 20 18 26 26 H 1.09000 * 109.47402 * 300.00138 * 1 2 3 27 27 H 1.09004 * 109.47355 * 59.99680 * 1 2 3 28 28 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46933 * 55.00087 * 4 2 1 30 30 H 1.09001 * 109.46769 * 295.00333 * 4 2 1 31 31 H 1.09004 * 109.47132 * 179.97438 * 7 5 4 32 32 H 1.08994 * 109.47099 * 299.99973 * 7 5 4 33 33 H 1.09003 * 109.47061 * 59.99966 * 7 5 4 34 34 H 0.97000 * 119.99456 * 24.99985 * 8 5 4 35 35 H 1.08004 * 123.34132 * 359.95411 * 12 11 9 36 36 H 1.07993 * 122.46678 * 179.97438 * 13 12 11 37 37 H 0.96999 * 119.99979 * 94.99970 * 17 2 1 38 38 H 0.97000 * 120.00653 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4359 -1.2677 7 6 4.0645 -1.2249 -2.6241 8 7 4.1537 -1.3342 -0.1825 9 6 5.3747 -0.9911 0.2733 10 8 5.9885 -0.0825 -0.2553 11 6 5.9609 -1.7079 1.4081 12 6 7.1836 -1.4505 1.9624 13 6 7.4861 -2.2749 3.0191 14 6 6.5442 -3.1789 3.3219 15 17 6.6708 -4.3392 4.6070 16 16 5.2015 -3.0328 2.2795 17 7 2.0183 -0.6907 1.1961 18 6 2.1491 -0.0076 2.3757 19 1 1.8918 1.0402 2.4244 20 6 2.6113 -0.6621 3.5092 21 7 2.9234 -1.9394 3.4503 22 14 2.7890 0.2695 5.1185 23 1 2.3753 1.6819 4.9211 24 1 1.9279 -0.3592 6.1521 25 1 4.2058 0.2264 5.5615 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6054 -0.2616 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 5.1508 -1.1476 -2.6702 32 1 3.7723 -2.2739 -2.6701 33 1 3.6264 -0.6885 -3.4658 34 1 3.6647 -2.0585 0.2385 35 1 7.8462 -0.6761 1.6050 36 1 8.4149 -2.2005 3.5650 37 1 2.2490 -1.6318 1.1525 38 1 3.2467 -2.3968 4.2422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136112212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:07 Heat of formation + Delta-G solvation = -15.280885 kcal Electronic energy + Delta-G solvation = -22988.738101 eV Core-core repulsion = 19597.528246 eV Total energy + Delta-G solvation = -3391.209855 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80691 -38.80164 -38.11741 -37.25400 -35.80570 -34.08162 -32.36979 -30.47014 -29.81900 -27.59072 -25.80099 -25.62827 -23.16309 -21.76717 -21.49322 -20.21745 -19.44186 -19.16421 -17.36392 -16.93066 -16.64332 -16.26643 -15.95180 -15.54149 -15.38049 -14.84646 -14.57130 -14.31598 -14.12767 -14.08998 -13.66222 -13.44339 -13.32180 -13.13439 -12.90950 -12.79385 -12.61467 -12.40035 -12.27733 -12.15000 -12.12024 -11.73441 -11.68245 -11.43199 -11.41218 -10.97648 -10.90824 -9.97260 -9.45973 -9.36600 -8.65461 -7.86596 -5.04393 -0.41225 0.35399 1.03795 1.36703 1.43163 1.46624 1.50890 1.52099 2.26473 2.50438 2.58106 3.46570 3.77508 3.96840 4.12284 4.18617 4.36017 4.39385 4.53671 4.58059 4.69484 4.85053 4.88883 4.92429 4.99571 5.08454 5.14616 5.15164 5.27105 5.38939 5.40813 5.43334 5.57815 5.63699 5.73905 6.32004 6.64064 7.32755 7.41276 8.09864 8.37828 9.27521 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.006815 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.510759 B = 4107.781832 C = 5595.530526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.032 0.968 4 C -0.121 4.121 5 C 0.144 3.856 6 H 0.060 0.940 7 C -0.153 4.153 8 N -0.691 5.691 9 C 0.596 3.404 10 O -0.588 6.588 11 C -0.310 4.310 12 C -0.088 4.088 13 C -0.153 4.153 14 C -0.230 4.230 15 Cl -0.021 7.021 16 S 0.423 5.577 17 N -0.718 5.718 18 C -0.203 4.203 19 H 0.059 0.941 20 C -0.052 4.052 21 N -0.911 5.911 22 Si 0.932 3.068 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.304 1.304 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.400 0.600 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.376 0.624 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -5.026 -7.753 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 H 0.050 0.950 4 C -0.159 4.159 5 C 0.040 3.960 6 H 0.078 0.922 7 C -0.211 4.211 8 N -0.341 5.341 9 C 0.384 3.616 10 O -0.472 6.472 11 C -0.434 4.434 12 C -0.122 4.122 13 C -0.187 4.187 14 C -0.379 4.379 15 Cl 0.007 6.993 16 S 0.695 5.305 17 N -0.360 5.360 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.246 4.246 21 N -0.562 5.562 22 Si 0.765 3.235 23 H -0.209 1.209 24 H -0.221 1.221 25 H -0.233 1.233 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.238 0.762 35 H 0.165 0.835 36 H 0.175 0.825 37 H 0.210 0.790 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.458 -5.135 -8.032 9.545 hybrid contribution 1.543 0.909 2.200 2.837 sum 2.001 -4.226 -5.832 7.476 Atomic orbital electron populations 1.22244 0.97276 1.01165 1.00538 1.20560 0.92945 0.95074 0.86389 0.94958 1.22160 0.92522 1.02309 0.98933 1.21033 0.93561 0.96060 0.85340 0.92191 1.22124 1.00719 1.01993 0.96305 1.45926 1.16663 1.37371 1.34189 1.16954 0.81480 0.81846 0.81329 1.90694 1.63246 1.32235 1.61034 1.24804 1.01863 1.10487 1.06274 1.20383 0.95553 1.00507 0.95787 1.19855 1.01548 0.97053 1.00224 1.25503 1.03594 1.03971 1.04826 1.98313 1.97773 1.55961 1.47261 1.83856 1.06537 1.22723 1.17412 1.42622 1.77440 1.10127 1.05804 1.19462 1.32167 0.93565 0.88303 0.92302 1.24798 1.04134 0.96797 0.98867 1.69284 1.50203 1.08332 1.28368 0.85676 0.76356 0.78384 0.83044 1.20928 1.22140 1.23254 0.95124 0.91216 0.93167 0.86929 0.90349 0.94236 0.91184 0.89256 0.76235 0.83518 0.82466 0.78959 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.49 71.98 0.68 -3.84 16 2 C 0.16 5.29 2.89 44.99 0.13 5.42 16 3 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 4 C -0.12 -3.07 4.43 30.59 0.14 -2.93 16 5 C 0.14 4.31 2.57 44.99 0.12 4.43 16 6 H 0.06 2.12 7.58 -2.38 -0.02 2.10 16 7 C -0.15 -3.65 9.48 71.98 0.68 -2.97 16 8 N -0.69 -24.43 3.80 -446.70 -1.70 -26.12 16 9 C 0.60 24.65 7.74 86.39 0.67 25.32 16 10 O -0.59 -27.25 16.50 -4.42 -0.07 -27.32 16 11 C -0.31 -12.31 6.45 24.05 0.16 -12.16 16 12 C -0.09 -3.26 10.01 21.71 0.22 -3.04 16 13 C -0.15 -5.19 10.08 21.11 0.21 -4.98 16 14 C -0.23 -7.99 6.82 66.86 0.46 -7.54 16 15 Cl -0.02 -0.65 29.27 -2.72 -0.08 -0.73 16 16 S 0.42 15.42 19.17 -56.49 -1.08 14.34 16 17 N -0.72 -29.82 3.84 -322.94 -1.24 -31.06 16 18 C -0.20 -9.93 9.93 84.03 0.83 -9.09 16 19 H 0.06 2.99 7.83 -2.91 -0.02 2.97 16 20 C -0.05 -2.61 5.50 84.86 0.47 -2.15 16 21 N -0.91 -44.19 10.12 21.65 0.22 -43.97 16 22 Si 0.93 43.91 29.55 68.60 2.03 45.94 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 26 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.40 13.94 5.62 -92.71 -0.52 13.42 16 35 H 0.15 5.22 8.06 -2.91 -0.02 5.19 16 36 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 37 H 0.38 15.74 5.70 -92.71 -0.53 15.21 16 38 H 0.25 12.42 8.21 -92.71 -0.76 11.66 16 Total: -1.00 -57.09 343.22 2.88 -54.21 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.05 Total: 28.24 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.76 Total: -13.52 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -2.72 Total: -101.16 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.07 Total: -27.32 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 15.42 SS G_CDS: -1.08 Total: 14.34 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -57.09 2.88 -54.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136112212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.926 kcal (2) G-P(sol) polarization free energy of solvation -57.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds