Wall clock time and date at job start Tue Mar 31 2020 11:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47302 * 2 1 4 4 C 1.52998 * 109.46884 * 239.99494 * 2 1 3 5 5 C 1.53001 * 109.46886 * 175.00614 * 4 2 1 6 6 H 1.08994 * 109.47450 * 55.00081 * 5 4 2 7 7 C 1.53001 * 109.46774 * 175.00105 * 5 4 2 8 8 N 1.46507 * 109.46834 * 294.99724 * 5 4 2 9 9 C 1.34767 * 120.00072 * 155.00617 * 8 5 4 10 10 O 1.21725 * 119.99861 * 359.97438 * 9 8 5 11 11 C 1.46468 * 120.00419 * 180.02562 * 9 8 5 12 12 C 1.36684 * 125.44963 * 179.97438 * 11 9 8 13 13 C 1.37405 * 113.31645 * 179.97438 * 12 11 9 14 14 C 1.34016 * 115.07084 * 0.02562 * 13 12 11 15 15 Cl 1.73600 * 124.53143 * 179.97438 * 14 13 12 16 16 S 1.70612 * 110.93715 * 359.97438 * 14 13 12 17 17 N 1.46504 * 109.46584 * 119.99764 * 2 1 3 18 18 C 1.36940 * 119.99711 * 274.99464 * 17 2 1 19 19 H 1.08001 * 120.00280 * 0.02562 * 18 17 2 20 20 C 1.38808 * 119.99547 * 180.02562 * 18 17 2 21 21 N 1.31621 * 120.00619 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99699 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47073 * 60.00071 * 22 20 18 24 24 H 1.48499 * 109.47015 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46940 * 299.99620 * 22 20 18 26 26 H 1.09001 * 109.47386 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47065 * 300.00821 * 1 2 3 28 28 H 1.09001 * 109.47141 * 60.00499 * 1 2 3 29 29 H 1.08999 * 109.47478 * 55.00356 * 4 2 1 30 30 H 1.09006 * 109.47151 * 295.00065 * 4 2 1 31 31 H 1.08998 * 109.47314 * 299.99433 * 7 5 4 32 32 H 1.08999 * 109.47575 * 59.99935 * 7 5 4 33 33 H 1.09007 * 109.46616 * 179.97438 * 7 5 4 34 34 H 0.97003 * 119.99504 * 335.00024 * 8 5 4 35 35 H 1.08002 * 123.34668 * 0.02562 * 12 11 9 36 36 H 1.08002 * 122.46806 * 179.72640 * 13 12 11 37 37 H 0.96996 * 119.99913 * 95.00695 * 17 2 1 38 38 H 0.96999 * 120.00354 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3136 6 1 3.9953 -0.9925 -0.3867 7 6 4.0850 -1.4386 -2.4923 8 7 3.9480 0.7892 -1.4924 9 6 5.1612 1.2133 -1.0868 10 8 5.9384 0.4310 -0.5714 11 6 5.5441 2.6157 -1.2651 12 6 6.7406 3.1639 -0.8959 13 6 6.8355 4.5047 -1.1807 14 6 5.7535 5.0395 -1.7634 15 17 5.6080 6.7060 -2.2271 16 16 4.5383 3.8633 -1.9886 17 7 2.0182 -0.6906 1.1963 18 6 2.1490 -0.0073 2.3758 19 1 1.8919 1.0405 2.4243 20 6 2.6121 -0.6616 3.5091 21 7 2.9250 -1.9387 3.4502 22 14 2.7899 0.2703 5.1183 23 1 1.4672 0.8062 5.5287 24 1 3.2988 -0.6480 6.1685 25 1 3.7445 1.3933 4.9372 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -0.2619 -2.1370 30 1 1.7515 -1.7717 -1.2054 31 1 3.7999 -2.4822 -2.3593 32 1 3.6545 -1.0597 -3.4192 33 1 5.1714 -1.3614 -2.5384 34 1 3.3284 1.4126 -1.9029 35 1 7.5331 2.5991 -0.4276 36 1 7.7153 5.0861 -0.9476 37 1 2.2490 -1.6317 1.1527 38 1 3.2483 -2.3959 4.2422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136112215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:17 Heat of formation + Delta-G solvation = -7.668867 kcal Electronic energy + Delta-G solvation = -21903.312759 eV Core-core repulsion = 18512.432986 eV Total energy + Delta-G solvation = -3390.879773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -39.74475 -38.09853 -37.00093 -36.50559 -34.47106 -32.21421 -31.11075 -29.30515 -28.56885 -26.34103 -25.15068 -23.59754 -22.26513 -20.65283 -19.83319 -19.49763 -18.78140 -17.17033 -16.38107 -16.06469 -15.44776 -14.99737 -14.61426 -14.00427 -13.98895 -13.83120 -13.58932 -13.48205 -13.02105 -12.90557 -12.66285 -12.16729 -12.01225 -11.74405 -11.71079 -11.64093 -11.54582 -11.09935 -11.03879 -10.79641 -10.61003 -10.43512 -10.23275 -9.90376 -9.83421 -9.59070 -8.98281 -8.88302 -8.85014 -8.73377 -6.89887 -5.70235 -2.98318 0.19514 0.77381 1.47176 1.87924 2.14006 3.24467 3.38097 3.48044 3.52752 3.53197 4.64782 4.80036 4.92441 5.11418 5.12627 5.38483 5.47586 5.59148 5.63228 5.68052 5.83235 5.87400 5.92882 5.99991 6.01829 6.12490 6.28625 6.34674 6.43647 6.56593 6.66802 6.77143 6.90845 7.08110 7.64743 7.74657 8.36859 8.48139 9.59501 10.16299 10.50650 11.52412 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.004131 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.083078 B = 6776.582068 C = 7672.619989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.144 3.856 6 H 0.109 0.891 7 C -0.161 4.161 8 N -0.710 5.710 9 C 0.589 3.411 10 O -0.515 6.515 11 C -0.242 4.242 12 C -0.057 4.057 13 C -0.130 4.130 14 C -0.173 4.173 15 Cl -0.013 7.013 16 S 0.246 5.754 17 N -0.720 5.720 18 C -0.235 4.235 19 H 0.066 0.934 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.287 1.287 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.391 0.609 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.383 0.617 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 12.229 -16.641 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.171 4.171 5 C 0.040 3.960 6 H 0.127 0.873 7 C -0.220 4.220 8 N -0.361 5.361 9 C 0.373 3.627 10 O -0.392 6.392 11 C -0.363 4.363 12 C -0.089 4.089 13 C -0.164 4.164 14 C -0.319 4.319 15 Cl 0.015 6.985 16 S 0.512 5.488 17 N -0.362 5.362 18 C -0.367 4.367 19 H 0.084 0.916 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.214 1.214 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.224 0.776 35 H 0.180 0.820 36 H 0.171 0.829 37 H 0.217 0.783 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.512 11.940 -16.783 20.749 hybrid contribution 1.281 0.856 1.398 2.081 sum 3.793 12.797 -15.384 20.367 Atomic orbital electron populations 1.22457 0.99454 1.00844 0.99797 1.20227 0.91653 0.95499 0.86565 0.93733 1.22188 0.93503 1.02445 0.98914 1.21113 0.95347 0.79321 1.00175 0.87284 1.22192 1.01607 1.00273 0.97911 1.45866 1.15715 1.12128 1.62360 1.16759 0.82475 0.84956 0.78461 1.90879 1.51140 1.54553 1.42587 1.24934 1.00296 0.98515 1.12594 1.20656 0.96995 0.93359 0.97885 1.20070 0.99299 0.95192 1.01796 1.24944 1.02344 0.92844 1.11799 1.98376 1.97619 1.11819 1.90636 1.83095 1.14599 0.95538 1.55548 1.42385 1.78012 1.10551 1.05239 1.19106 1.36558 0.93651 0.87361 0.91579 1.24679 1.02139 0.95916 0.97897 1.69632 1.50867 1.08597 1.28882 0.86347 0.77665 0.78738 0.83924 1.21411 1.21705 1.21368 0.93486 0.92878 0.94701 0.91984 0.90344 0.91481 0.93052 0.92416 0.77581 0.81992 0.82885 0.78311 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.49 37.16 0.35 -2.50 16 2 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16 3 H 0.04 0.86 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.96 4.29 -26.73 -0.11 -2.08 16 5 C 0.14 2.29 2.52 -67.93 -0.17 2.12 16 6 H 0.11 2.28 7.05 -51.93 -0.37 1.91 16 7 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 8 N -0.71 -10.48 4.44 -55.18 -0.25 -10.73 16 9 C 0.59 9.88 7.74 -12.95 -0.10 9.78 16 10 O -0.51 -10.74 16.50 5.17 0.09 -10.66 16 11 C -0.24 -3.31 6.45 -36.83 -0.24 -3.54 16 12 C -0.06 -0.70 10.01 -40.45 -0.40 -1.11 16 13 C -0.13 -1.37 10.08 -41.37 -0.42 -1.78 16 14 C -0.17 -1.82 6.82 29.25 0.20 -1.62 16 15 Cl -0.01 -0.12 29.27 -51.86 -1.52 -1.64 16 16 S 0.25 2.59 22.15 -107.50 -2.38 0.21 16 17 N -0.72 -17.54 4.49 -53.43 -0.24 -17.78 16 18 C -0.24 -6.53 9.93 -15.06 -0.15 -6.67 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 22 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.39 4.69 7.71 -40.82 -0.31 4.38 16 35 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 38 H 0.25 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -32.36 353.44 -9.42 -41.78 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.17 Total: 9.85 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.98 Total: -6.60 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.24 Total: -56.18 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.38 Total: 0.21 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.36 -9.42 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136112215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.110 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds