Wall clock time and date at job start Tue Mar 31 2020 11:00:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08993 * 109.47302 * 2 1
4 4 C 1.52998 * 109.46884 * 239.99494 * 2 1 3
5 5 C 1.53001 * 109.46886 * 175.00614 * 4 2 1
6 6 H 1.08994 * 109.47450 * 55.00081 * 5 4 2
7 7 C 1.53001 * 109.46774 * 175.00105 * 5 4 2
8 8 N 1.46507 * 109.46834 * 294.99724 * 5 4 2
9 9 C 1.34767 * 120.00072 * 155.00617 * 8 5 4
10 10 O 1.21725 * 119.99861 * 359.97438 * 9 8 5
11 11 C 1.46468 * 120.00419 * 180.02562 * 9 8 5
12 12 C 1.36684 * 125.44963 * 179.97438 * 11 9 8
13 13 C 1.37405 * 113.31645 * 179.97438 * 12 11 9
14 14 C 1.34016 * 115.07084 * 0.02562 * 13 12 11
15 15 Cl 1.73600 * 124.53143 * 179.97438 * 14 13 12
16 16 S 1.70612 * 110.93715 * 359.97438 * 14 13 12
17 17 N 1.46504 * 109.46584 * 119.99764 * 2 1 3
18 18 C 1.36940 * 119.99711 * 274.99464 * 17 2 1
19 19 H 1.08001 * 120.00280 * 0.02562 * 18 17 2
20 20 C 1.38808 * 119.99547 * 180.02562 * 18 17 2
21 21 N 1.31621 * 120.00619 * 359.97438 * 20 18 17
22 22 Si 1.86809 * 119.99699 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.47073 * 60.00071 * 22 20 18
24 24 H 1.48499 * 109.47015 * 179.97438 * 22 20 18
25 25 H 1.48498 * 109.46940 * 299.99620 * 22 20 18
26 26 H 1.09001 * 109.47386 * 180.02562 * 1 2 3
27 27 H 1.09005 * 109.47065 * 300.00821 * 1 2 3
28 28 H 1.09001 * 109.47141 * 60.00499 * 1 2 3
29 29 H 1.08999 * 109.47478 * 55.00356 * 4 2 1
30 30 H 1.09006 * 109.47151 * 295.00065 * 4 2 1
31 31 H 1.08998 * 109.47314 * 299.99433 * 7 5 4
32 32 H 1.08999 * 109.47575 * 59.99935 * 7 5 4
33 33 H 1.09007 * 109.46616 * 179.97438 * 7 5 4
34 34 H 0.97003 * 119.99504 * 335.00024 * 8 5 4
35 35 H 1.08002 * 123.34668 * 0.02562 * 12 11 9
36 36 H 1.08002 * 122.46806 * 179.72640 * 13 12 11
37 37 H 0.96996 * 119.99913 * 95.00695 * 17 2 1
38 38 H 0.96999 * 120.00354 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7214 -1.2492
5 6 3.5648 -0.6135 -1.3136
6 1 3.9953 -0.9925 -0.3867
7 6 4.0850 -1.4386 -2.4923
8 7 3.9480 0.7892 -1.4924
9 6 5.1612 1.2133 -1.0868
10 8 5.9384 0.4310 -0.5714
11 6 5.5441 2.6157 -1.2651
12 6 6.7406 3.1639 -0.8959
13 6 6.8355 4.5047 -1.1807
14 6 5.7535 5.0395 -1.7634
15 17 5.6080 6.7060 -2.2271
16 16 4.5383 3.8633 -1.9886
17 7 2.0182 -0.6906 1.1963
18 6 2.1490 -0.0073 2.3758
19 1 1.8919 1.0405 2.4243
20 6 2.6121 -0.6616 3.5091
21 7 2.9250 -1.9387 3.4502
22 14 2.7899 0.2703 5.1183
23 1 1.4672 0.8062 5.5287
24 1 3.2988 -0.6480 6.1685
25 1 3.7445 1.3933 4.9372
26 1 -0.3634 -1.0277 0.0005
27 1 -0.3633 0.5140 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 1.6054 -0.2619 -2.1370
30 1 1.7515 -1.7717 -1.2054
31 1 3.7999 -2.4822 -2.3593
32 1 3.6545 -1.0597 -3.4192
33 1 5.1714 -1.3614 -2.5384
34 1 3.3284 1.4126 -1.9029
35 1 7.5331 2.5991 -0.4276
36 1 7.7153 5.0861 -0.9476
37 1 2.2490 -1.6317 1.1527
38 1 3.2483 -2.3959 4.2422
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001136112215.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:00:17
Heat of formation + Delta-G solvation = -7.668867 kcal
Electronic energy + Delta-G solvation = -21903.312759 eV
Core-core repulsion = 18512.432986 eV
Total energy + Delta-G solvation = -3390.879773 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 316.075 amu
Computer time = 1.61 seconds
Orbital eigenvalues (eV)
-39.74475 -38.09853 -37.00093 -36.50559 -34.47106 -32.21421 -31.11075 -29.30515
-28.56885 -26.34103 -25.15068 -23.59754 -22.26513 -20.65283 -19.83319 -19.49763
-18.78140 -17.17033 -16.38107 -16.06469 -15.44776 -14.99737 -14.61426 -14.00427
-13.98895 -13.83120 -13.58932 -13.48205 -13.02105 -12.90557 -12.66285 -12.16729
-12.01225 -11.74405 -11.71079 -11.64093 -11.54582 -11.09935 -11.03879 -10.79641
-10.61003 -10.43512 -10.23275 -9.90376 -9.83421 -9.59070 -8.98281 -8.88302
-8.85014 -8.73377 -6.89887 -5.70235 -2.98318 0.19514 0.77381 1.47176
1.87924 2.14006 3.24467 3.38097 3.48044 3.52752 3.53197 4.64782
4.80036 4.92441 5.11418 5.12627 5.38483 5.47586 5.59148 5.63228
5.68052 5.83235 5.87400 5.92882 5.99991 6.01829 6.12490 6.28625
6.34674 6.43647 6.56593 6.66802 6.77143 6.90845 7.08110 7.64743
7.74657 8.36859 8.48139 9.59501 10.16299 10.50650 11.52412
Molecular weight = 316.08amu
Principal moments of inertia in cm(-1)
A = 0.011876 B = 0.004131 C = 0.003648
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2357.083078 B = 6776.582068 C = 7672.619989
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.171 3.829
3 H 0.045 0.955
4 C -0.132 4.132
5 C 0.144 3.856
6 H 0.109 0.891
7 C -0.161 4.161
8 N -0.710 5.710
9 C 0.589 3.411
10 O -0.515 6.515
11 C -0.242 4.242
12 C -0.057 4.057
13 C -0.130 4.130
14 C -0.173 4.173
15 Cl -0.013 7.013
16 S 0.246 5.754
17 N -0.720 5.720
18 C -0.235 4.235
19 H 0.066 0.934
20 C -0.010 4.010
21 N -0.931 5.931
22 Si 0.902 3.098
23 H -0.287 1.287
24 H -0.291 1.291
25 H -0.287 1.287
26 H 0.046 0.954
27 H 0.052 0.948
28 H 0.034 0.966
29 H 0.062 0.938
30 H 0.078 0.922
31 H 0.066 0.934
32 H 0.050 0.950
33 H 0.057 0.943
34 H 0.391 0.609
35 H 0.163 0.837
36 H 0.154 0.846
37 H 0.383 0.617
38 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.425 12.229 -16.641 20.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.061 3.939
3 H 0.063 0.937
4 C -0.171 4.171
5 C 0.040 3.960
6 H 0.127 0.873
7 C -0.220 4.220
8 N -0.361 5.361
9 C 0.373 3.627
10 O -0.392 6.392
11 C -0.363 4.363
12 C -0.089 4.089
13 C -0.164 4.164
14 C -0.319 4.319
15 Cl 0.015 6.985
16 S 0.512 5.488
17 N -0.362 5.362
18 C -0.367 4.367
19 H 0.084 0.916
20 C -0.206 4.206
21 N -0.580 5.580
22 Si 0.733 3.267
23 H -0.214 1.214
24 H -0.217 1.217
25 H -0.214 1.214
26 H 0.065 0.935
27 H 0.071 0.929
28 H 0.053 0.947
29 H 0.080 0.920
30 H 0.097 0.903
31 H 0.085 0.915
32 H 0.069 0.931
33 H 0.076 0.924
34 H 0.224 0.776
35 H 0.180 0.820
36 H 0.171 0.829
37 H 0.217 0.783
38 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 2.512 11.940 -16.783 20.749
hybrid contribution 1.281 0.856 1.398 2.081
sum 3.793 12.797 -15.384 20.367
Atomic orbital electron populations
1.22457 0.99454 1.00844 0.99797 1.20227 0.91653 0.95499 0.86565
0.93733 1.22188 0.93503 1.02445 0.98914 1.21113 0.95347 0.79321
1.00175 0.87284 1.22192 1.01607 1.00273 0.97911 1.45866 1.15715
1.12128 1.62360 1.16759 0.82475 0.84956 0.78461 1.90879 1.51140
1.54553 1.42587 1.24934 1.00296 0.98515 1.12594 1.20656 0.96995
0.93359 0.97885 1.20070 0.99299 0.95192 1.01796 1.24944 1.02344
0.92844 1.11799 1.98376 1.97619 1.11819 1.90636 1.83095 1.14599
0.95538 1.55548 1.42385 1.78012 1.10551 1.05239 1.19106 1.36558
0.93651 0.87361 0.91579 1.24679 1.02139 0.95916 0.97897 1.69632
1.50867 1.08597 1.28882 0.86347 0.77665 0.78738 0.83924 1.21411
1.21705 1.21368 0.93486 0.92878 0.94701 0.91984 0.90344 0.91481
0.93052 0.92416 0.77581 0.81992 0.82885 0.78311 0.93544
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 34.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.85 9.49 37.16 0.35 -2.50 16
2 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16
3 H 0.04 0.86 7.56 -51.93 -0.39 0.46 16
4 C -0.13 -1.96 4.29 -26.73 -0.11 -2.08 16
5 C 0.14 2.29 2.52 -67.93 -0.17 2.12 16
6 H 0.11 2.28 7.05 -51.93 -0.37 1.91 16
7 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16
8 N -0.71 -10.48 4.44 -55.18 -0.25 -10.73 16
9 C 0.59 9.88 7.74 -12.95 -0.10 9.78 16
10 O -0.51 -10.74 16.50 5.17 0.09 -10.66 16
11 C -0.24 -3.31 6.45 -36.83 -0.24 -3.54 16
12 C -0.06 -0.70 10.01 -40.45 -0.40 -1.11 16
13 C -0.13 -1.37 10.08 -41.37 -0.42 -1.78 16
14 C -0.17 -1.82 6.82 29.25 0.20 -1.62 16
15 Cl -0.01 -0.12 29.27 -51.86 -1.52 -1.64 16
16 S 0.25 2.59 22.15 -107.50 -2.38 0.21 16
17 N -0.72 -17.54 4.49 -53.43 -0.24 -17.78 16
18 C -0.24 -6.53 9.93 -15.06 -0.15 -6.67 16
19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16
20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16
21 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16
22 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16
23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16
28 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16
29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16
34 H 0.39 4.69 7.71 -40.82 -0.31 4.38 16
35 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16
36 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16
37 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16
38 H 0.25 7.59 8.31 -40.82 -0.34 7.26 16
LS Contribution 353.44 15.07 5.33 5.33
Total: -1.00 -32.36 353.44 -9.42 -41.78
By element:
Atomic # 1 Polarization: 15.01 SS G_CDS: -5.17 Total: 9.85 kcal
Atomic # 6 Polarization: -5.62 SS G_CDS: -0.98 Total: -6.60 kcal
Atomic # 7 Polarization: -56.42 SS G_CDS: 0.24 Total: -56.18 kcal
Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.66 kcal
Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal
Atomic # 16 Polarization: 2.59 SS G_CDS: -2.38 Total: 0.21 kcal
Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -32.36 -9.42 -41.78 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001136112215.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.110 kcal
(2) G-P(sol) polarization free energy of solvation -32.363 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.747 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.669 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.61 seconds