Wall clock time and date at job start Tue Mar 31 2020 11:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47302 * 2 1 4 4 C 1.52998 * 109.46884 * 239.99494 * 2 1 3 5 5 C 1.53001 * 109.46886 * 175.00614 * 4 2 1 6 6 H 1.08994 * 109.47450 * 55.00081 * 5 4 2 7 7 C 1.53001 * 109.46774 * 175.00105 * 5 4 2 8 8 N 1.46507 * 109.46834 * 294.99724 * 5 4 2 9 9 C 1.34767 * 120.00072 * 155.00617 * 8 5 4 10 10 O 1.21725 * 119.99861 * 359.97438 * 9 8 5 11 11 C 1.46468 * 120.00419 * 180.02562 * 9 8 5 12 12 C 1.36684 * 125.44963 * 179.97438 * 11 9 8 13 13 C 1.37405 * 113.31645 * 179.97438 * 12 11 9 14 14 C 1.34016 * 115.07084 * 0.02562 * 13 12 11 15 15 Cl 1.73600 * 124.53143 * 179.97438 * 14 13 12 16 16 S 1.70612 * 110.93715 * 359.97438 * 14 13 12 17 17 N 1.46504 * 109.46584 * 119.99764 * 2 1 3 18 18 C 1.36940 * 119.99711 * 274.99464 * 17 2 1 19 19 H 1.08001 * 120.00280 * 0.02562 * 18 17 2 20 20 C 1.38808 * 119.99547 * 180.02562 * 18 17 2 21 21 N 1.31621 * 120.00619 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99699 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47073 * 60.00071 * 22 20 18 24 24 H 1.48499 * 109.47015 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46940 * 299.99620 * 22 20 18 26 26 H 1.09001 * 109.47386 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47065 * 300.00821 * 1 2 3 28 28 H 1.09001 * 109.47141 * 60.00499 * 1 2 3 29 29 H 1.08999 * 109.47478 * 55.00356 * 4 2 1 30 30 H 1.09006 * 109.47151 * 295.00065 * 4 2 1 31 31 H 1.08998 * 109.47314 * 299.99433 * 7 5 4 32 32 H 1.08999 * 109.47575 * 59.99935 * 7 5 4 33 33 H 1.09007 * 109.46616 * 179.97438 * 7 5 4 34 34 H 0.97003 * 119.99504 * 335.00024 * 8 5 4 35 35 H 1.08002 * 123.34668 * 0.02562 * 12 11 9 36 36 H 1.08002 * 122.46806 * 179.72640 * 13 12 11 37 37 H 0.96996 * 119.99913 * 95.00695 * 17 2 1 38 38 H 0.96999 * 120.00354 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3136 6 1 3.9953 -0.9925 -0.3867 7 6 4.0850 -1.4386 -2.4923 8 7 3.9480 0.7892 -1.4924 9 6 5.1612 1.2133 -1.0868 10 8 5.9384 0.4310 -0.5714 11 6 5.5441 2.6157 -1.2651 12 6 6.7406 3.1639 -0.8959 13 6 6.8355 4.5047 -1.1807 14 6 5.7535 5.0395 -1.7634 15 17 5.6080 6.7060 -2.2271 16 16 4.5383 3.8633 -1.9886 17 7 2.0182 -0.6906 1.1963 18 6 2.1490 -0.0073 2.3758 19 1 1.8919 1.0405 2.4243 20 6 2.6121 -0.6616 3.5091 21 7 2.9250 -1.9387 3.4502 22 14 2.7899 0.2703 5.1183 23 1 1.4672 0.8062 5.5287 24 1 3.2988 -0.6480 6.1685 25 1 3.7445 1.3933 4.9372 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -0.2619 -2.1370 30 1 1.7515 -1.7717 -1.2054 31 1 3.7999 -2.4822 -2.3593 32 1 3.6545 -1.0597 -3.4192 33 1 5.1714 -1.3614 -2.5384 34 1 3.3284 1.4126 -1.9029 35 1 7.5331 2.5991 -0.4276 36 1 7.7153 5.0861 -0.9476 37 1 2.2490 -1.6317 1.1527 38 1 3.2483 -2.3959 4.2422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136112215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:17 Heat of formation + Delta-G solvation = -28.524676 kcal Electronic energy + Delta-G solvation = -21904.217135 eV Core-core repulsion = 18512.432986 eV Total energy + Delta-G solvation = -3391.784148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00731 -39.06673 -38.24593 -37.53910 -36.07331 -34.04811 -32.46637 -30.54639 -30.16683 -27.59853 -26.15362 -25.62944 -23.38044 -21.98295 -21.26048 -20.55386 -19.88171 -19.17830 -17.46476 -17.22858 -16.75587 -16.43810 -16.05755 -15.64974 -15.44924 -15.09591 -14.76183 -14.54633 -14.38209 -14.24355 -13.73673 -13.60173 -13.34738 -13.17179 -12.92464 -12.77968 -12.66768 -12.59367 -12.49112 -12.25974 -12.21433 -11.91903 -11.81715 -11.55805 -11.42825 -11.17224 -10.89494 -10.17939 -9.76846 -9.72048 -8.93613 -7.90688 -5.15959 -0.77119 -0.10933 0.56054 1.03147 1.18908 1.43124 1.46214 1.51347 2.04914 2.18464 2.57179 3.43699 3.69395 3.86055 4.01914 4.03193 4.13087 4.25514 4.40090 4.54438 4.68656 4.71604 4.79721 4.83651 4.90817 4.93630 5.04793 5.09795 5.11975 5.23499 5.35093 5.40274 5.50860 5.59581 5.65131 6.32440 6.45774 7.15228 7.38461 8.18546 8.38355 9.32871 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.004131 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.083078 B = 6776.582068 C = 7672.619989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.041 0.959 4 C -0.119 4.119 5 C 0.145 3.855 6 H 0.052 0.948 7 C -0.152 4.152 8 N -0.700 5.700 9 C 0.583 3.417 10 O -0.572 6.572 11 C -0.281 4.281 12 C -0.056 4.056 13 C -0.132 4.132 14 C -0.174 4.174 15 Cl 0.004 6.996 16 S 0.299 5.701 17 N -0.732 5.732 18 C -0.227 4.227 19 H 0.069 0.931 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.959 3.041 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.286 1.286 26 H 0.043 0.957 27 H 0.029 0.971 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.406 0.594 35 H 0.156 0.844 36 H 0.176 0.824 37 H 0.371 0.629 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 14.598 -18.755 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.059 0.941 4 C -0.158 4.158 5 C 0.041 3.959 6 H 0.070 0.930 7 C -0.210 4.210 8 N -0.350 5.350 9 C 0.370 3.630 10 O -0.453 6.453 11 C -0.402 4.402 12 C -0.090 4.090 13 C -0.164 4.164 14 C -0.321 4.321 15 Cl 0.032 6.968 16 S 0.566 5.434 17 N -0.372 5.372 18 C -0.359 4.359 19 H 0.087 0.913 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.790 3.210 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.213 1.213 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.243 0.757 35 H 0.173 0.827 36 H 0.194 0.806 37 H 0.202 0.798 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.147 14.372 -18.957 23.817 hybrid contribution 1.649 0.259 1.936 2.557 sum 2.796 14.631 -17.021 22.619 Atomic orbital electron populations 1.22305 0.97565 1.00949 1.00763 1.20536 0.92786 0.95197 0.86092 0.94097 1.22109 0.92441 1.02605 0.98606 1.20944 0.95952 0.80139 0.98838 0.93013 1.22096 1.00504 1.00387 0.98013 1.45761 1.15474 1.12090 1.61723 1.17221 0.82337 0.85962 0.77486 1.90841 1.52739 1.56451 1.45226 1.24736 1.02061 0.98015 1.15403 1.20796 0.96570 0.94323 0.97308 1.20182 1.00285 0.94322 1.01660 1.25156 1.02336 0.93707 1.10873 1.98390 1.97542 1.10453 1.90380 1.82784 1.13068 0.93590 1.53947 1.42592 1.78253 1.10119 1.06230 1.19459 1.34175 0.93777 0.88520 0.91318 1.25403 1.03485 0.96801 1.01092 1.69786 1.53003 1.10053 1.29113 0.85413 0.77879 0.77369 0.80387 1.20163 1.22314 1.21285 0.93821 0.95206 0.90387 0.87372 0.90089 0.90792 0.89792 0.94237 0.75729 0.82677 0.80637 0.79758 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 9.49 71.98 0.68 -4.31 16 2 C 0.16 5.84 2.84 44.99 0.13 5.97 16 3 H 0.04 1.51 7.56 -2.39 -0.02 1.49 16 4 C -0.12 -3.29 4.29 30.59 0.13 -3.16 16 5 C 0.15 4.60 2.52 44.99 0.11 4.71 16 6 H 0.05 2.28 7.05 -2.39 -0.02 2.26 16 7 C -0.15 -3.89 9.48 71.98 0.68 -3.21 16 8 N -0.70 -20.24 4.44 -446.69 -1.98 -22.23 16 9 C 0.58 20.06 7.74 86.39 0.67 20.73 16 10 O -0.57 -25.38 16.50 -4.43 -0.07 -25.45 16 11 C -0.28 -7.59 6.45 24.05 0.16 -7.44 16 12 C -0.06 -1.40 10.01 21.71 0.22 -1.18 16 13 C -0.13 -2.54 10.08 21.11 0.21 -2.33 16 14 C -0.17 -3.24 6.82 66.86 0.46 -2.79 16 15 Cl 0.00 0.06 29.27 -2.72 -0.08 -0.02 16 16 S 0.30 5.62 22.15 -56.49 -1.25 4.37 16 17 N -0.73 -36.18 4.49 -322.94 -1.45 -37.63 16 18 C -0.23 -12.76 9.93 84.03 0.83 -11.92 16 19 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 20 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 21 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 22 Si 0.96 48.08 29.55 68.60 2.03 50.11 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.41 8.87 7.71 -92.71 -0.71 8.16 16 35 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.37 19.99 7.80 -92.71 -0.72 19.26 16 38 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -73.77 353.44 1.87 -71.90 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.35 Total: 28.69 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.75 Total: -8.93 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -3.15 Total: -120.67 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.07 Total: -25.45 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.25 Total: 4.37 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.02 kcal Total: -73.77 1.87 -71.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136112215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.377 kcal (2) G-P(sol) polarization free energy of solvation -73.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds