Wall clock time and date at job start Tue Mar 31 2020 11:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 C 1.53002 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47088 * 185.21509 * 4 3 2 6 6 C 1.46899 * 110.99986 * 301.84703 * 5 4 3 7 7 C 1.50696 * 109.47601 * 289.11620 * 6 5 4 8 8 H 1.08001 * 119.99544 * 4.94352 * 7 6 5 9 9 C 1.37878 * 120.00395 * 184.94011 * 7 6 5 10 10 N 1.31517 * 119.99956 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99874 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47277 * 89.99539 * 11 9 7 13 13 H 1.48493 * 109.47165 * 209.99811 * 11 9 7 14 14 H 1.48504 * 109.46806 * 329.99744 * 11 9 7 15 15 C 1.46899 * 111.00220 * 65.80273 * 5 4 3 16 16 C 1.50701 * 109.46865 * 76.60204 * 15 5 4 17 17 C 1.38735 * 120.80017 * 81.57257 * 16 15 5 18 18 Cl 1.73604 * 120.42511 * 0.24345 * 17 16 15 19 19 C 1.38330 * 119.15165 * 179.97438 * 17 16 15 20 20 N 1.31855 * 120.77641 * 0.02562 * 19 17 16 21 21 C 1.31861 * 121.74785 * 359.97438 * 20 19 17 22 22 C 1.38330 * 120.77767 * 359.97438 * 21 20 19 23 23 Cl 1.73595 * 120.42819 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46869 * 299.99224 * 1 2 3 26 26 H 1.08997 * 109.47485 * 59.99399 * 1 2 3 27 27 H 1.09000 * 109.46869 * 240.00776 * 2 1 3 28 28 H 1.08997 * 109.47485 * 120.00601 * 2 1 3 29 29 H 1.09000 * 109.46677 * 60.00658 * 3 2 1 30 30 H 1.08997 * 109.47494 * 300.00595 * 3 2 1 31 31 H 1.09001 * 109.46748 * 65.21673 * 4 3 2 32 32 H 1.09004 * 109.47316 * 305.21483 * 4 3 2 33 33 H 1.09006 * 109.46700 * 49.11728 * 6 5 4 34 34 H 1.08999 * 109.47175 * 169.11575 * 6 5 4 35 35 H 0.96995 * 119.99832 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.47030 * 316.60371 * 15 5 4 37 37 H 1.08999 * 109.47298 * 196.60411 * 15 5 4 38 38 H 1.08004 * 119.61666 * 179.97438 * 19 17 16 39 39 H 1.08005 * 119.61132 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8218 0.1265 6 6 3.5533 3.6620 -0.9669 7 6 4.2279 3.2694 -2.2560 8 1 4.8994 2.4238 -2.2782 9 6 3.9878 3.9895 -3.4070 10 7 4.5770 3.6471 -4.5318 11 14 2.8269 5.4524 -3.3683 12 1 3.5936 6.6847 -3.0536 13 1 2.1734 5.6009 -4.6934 14 1 1.7907 5.2346 -2.3270 15 6 3.7046 3.3892 1.4342 16 6 4.6235 2.8310 2.4901 17 6 5.8898 3.3639 2.6837 18 17 6.4416 4.6939 1.7140 19 6 6.7049 2.8255 3.6631 20 7 6.2911 1.8184 4.4068 21 6 5.0945 1.2867 4.2512 22 6 4.2233 1.7725 3.2928 23 17 2.6503 1.0653 3.0953 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 3.9337 1.0116 -0.9322 32 1 3.9330 0.8501 0.8405 33 1 2.4765 3.5229 -1.0633 34 1 3.7664 4.7086 -0.7495 35 1 4.4078 4.1535 -5.3416 36 1 2.6738 3.1293 1.6753 37 1 3.8072 4.4738 1.3996 38 1 7.6922 3.2342 3.8199 39 1 4.7911 0.4621 4.8793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137608579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:44 Heat of formation + Delta-G solvation = 20.987874 kcal Electronic energy + Delta-G solvation = -22630.408233 eV Core-core repulsion = 19238.727404 eV Total energy + Delta-G solvation = -3391.680829 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51862 -37.87415 -36.78792 -36.42170 -34.26644 -33.12233 -32.04440 -31.01329 -28.65483 -28.05387 -25.43309 -23.73826 -23.27285 -21.99177 -21.26753 -19.40279 -17.28988 -17.10769 -16.71910 -16.17440 -15.58119 -14.97360 -14.72640 -14.53059 -14.33418 -13.95654 -13.56832 -13.16017 -12.75014 -12.60045 -12.48444 -12.32641 -12.20047 -11.79432 -11.50331 -11.39458 -11.32129 -11.14011 -10.86345 -10.75314 -10.72338 -10.56698 -10.34830 -10.03574 -9.86948 -9.73609 -9.40398 -9.27734 -8.93239 -8.56655 -7.40279 -6.05369 -4.01721 0.66931 0.88649 1.78864 2.21937 3.26129 3.34024 3.34826 3.38723 4.22887 4.38863 4.40509 4.47222 4.84607 4.88717 5.02245 5.21818 5.23888 5.28548 5.39361 5.44157 5.59731 5.71089 5.81936 5.91222 6.01961 6.04664 6.11687 6.15560 6.18952 6.35328 6.46390 6.54791 6.79557 6.90565 6.99933 7.55187 7.55646 7.81859 7.94838 8.63352 9.04301 9.56199 11.07911 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.006221 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.180736 B = 4499.998874 C = 6419.821482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.157 4.157 4 C 0.064 3.936 5 N -0.509 5.509 6 C 0.162 3.838 7 C -0.501 4.501 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.900 5.900 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.070 3.930 16 C -0.003 4.003 17 C -0.060 4.060 18 Cl -0.024 7.024 19 C 0.109 3.891 20 N -0.461 5.461 21 C 0.109 3.891 22 C -0.080 4.080 23 Cl -0.039 7.039 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.055 0.945 33 H -0.002 1.002 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.169 0.831 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 -3.520 17.416 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.196 4.196 4 C -0.064 4.064 5 N -0.232 5.232 6 C 0.036 3.964 7 C -0.539 4.539 8 H 0.098 0.902 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.193 1.193 15 C -0.058 4.058 16 C -0.013 4.013 17 C -0.090 4.090 18 Cl 0.005 6.995 19 C -0.048 4.048 20 N -0.170 5.170 21 C -0.049 4.049 22 C -0.109 4.109 23 Cl -0.010 7.010 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.015 0.985 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.186 0.814 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.684 -3.733 17.695 18.163 hybrid contribution -2.100 1.238 -0.859 2.585 sum -3.784 -2.495 16.836 17.435 Atomic orbital electron populations 1.21764 0.96600 1.00855 1.01491 1.21421 0.95133 0.97363 1.01607 1.22285 0.98605 0.96624 1.02104 1.22132 0.91827 0.90327 1.02151 1.62203 1.59051 1.02464 0.99442 1.20270 0.94066 0.92173 0.89885 1.20940 1.27029 1.15657 0.90272 0.90181 1.24854 0.95720 0.97109 0.95474 1.69885 1.43471 1.40629 0.99906 0.86952 0.81883 0.83941 0.77528 1.20217 1.21254 1.19311 1.21266 0.95140 0.99862 0.89551 1.20234 0.93948 0.92421 0.94707 1.21932 0.94734 0.95581 0.96716 1.98428 1.88576 1.43081 1.69452 1.22871 0.99694 0.91970 0.90263 1.67918 1.14870 1.09444 1.24815 1.22787 0.88462 0.98596 0.95034 1.22005 0.90510 0.98074 1.00350 1.98389 1.23789 1.82287 1.96546 0.93303 0.93450 0.92711 0.91888 0.92685 0.92556 0.90845 0.89665 0.92700 0.98455 0.96009 0.92720 0.92387 0.89362 0.81353 0.81553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.62 5.93 -26.73 -0.16 -1.78 16 3 C -0.16 -2.55 3.76 -26.73 -0.10 -2.65 16 4 C 0.06 1.15 4.68 -3.82 -0.02 1.13 16 5 N -0.51 -9.93 4.58 -237.52 -1.09 -11.02 16 6 C 0.16 3.69 3.59 -4.98 -0.02 3.68 16 7 C -0.50 -13.68 9.23 -34.44 -0.32 -14.00 16 8 H 0.08 2.41 7.50 -52.49 -0.39 2.02 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 11 Si 0.87 21.09 27.37 -169.99 -4.65 16.44 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.22 6.69 56.52 0.38 -5.84 16 15 C 0.07 1.14 4.32 -4.98 -0.02 1.12 16 16 C 0.00 -0.05 5.01 -104.25 -0.52 -0.57 16 17 C -0.06 -0.84 6.34 -39.36 -0.25 -1.09 16 18 Cl -0.02 -0.36 27.66 -51.86 -1.43 -1.80 16 19 C 0.11 1.34 10.98 -17.51 -0.19 1.15 16 20 N -0.46 -5.77 10.36 -13.19 -0.14 -5.91 16 21 C 0.11 1.26 10.99 -17.51 -0.19 1.07 16 22 C -0.08 -1.02 5.68 -39.36 -0.22 -1.24 16 23 Cl -0.04 -0.46 23.18 -51.86 -1.20 -1.67 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 29 H 0.06 0.86 4.84 -51.93 -0.25 0.61 16 30 H 0.07 1.38 6.44 -51.93 -0.33 1.04 16 31 H 0.08 1.76 7.15 -51.93 -0.37 1.38 16 32 H 0.05 0.91 5.81 -51.93 -0.30 0.61 16 33 H 0.00 -0.05 5.24 -51.93 -0.27 -0.32 16 34 H 0.02 0.51 6.86 -51.93 -0.36 0.15 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.06 0.90 4.55 -51.93 -0.24 0.66 16 37 H 0.09 1.45 6.89 -51.93 -0.36 1.09 16 38 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -29.35 333.71 -9.42 -38.76 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.96 Total: -0.67 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.74 Total: -12.79 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.45 Total: -43.30 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.65 Total: 16.44 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -2.64 Total: -3.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.35 -9.42 -38.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137608579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.750 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds