Wall clock time and date at job start Tue Mar 31 2020 11:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 C 1.53002 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47088 * 185.21509 * 4 3 2 6 6 C 1.46899 * 110.99986 * 301.84703 * 5 4 3 7 7 C 1.50696 * 109.47601 * 289.11620 * 6 5 4 8 8 H 1.08001 * 119.99544 * 4.94352 * 7 6 5 9 9 C 1.37878 * 120.00395 * 184.94011 * 7 6 5 10 10 N 1.31517 * 119.99956 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99874 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47277 * 89.99539 * 11 9 7 13 13 H 1.48493 * 109.47165 * 209.99811 * 11 9 7 14 14 H 1.48504 * 109.46806 * 329.99744 * 11 9 7 15 15 C 1.46899 * 111.00220 * 65.80273 * 5 4 3 16 16 C 1.50701 * 109.46865 * 76.60204 * 15 5 4 17 17 C 1.38735 * 120.80017 * 81.57257 * 16 15 5 18 18 Cl 1.73604 * 120.42511 * 0.24345 * 17 16 15 19 19 C 1.38330 * 119.15165 * 179.97438 * 17 16 15 20 20 N 1.31855 * 120.77641 * 0.02562 * 19 17 16 21 21 C 1.31861 * 121.74785 * 359.97438 * 20 19 17 22 22 C 1.38330 * 120.77767 * 359.97438 * 21 20 19 23 23 Cl 1.73595 * 120.42819 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46869 * 299.99224 * 1 2 3 26 26 H 1.08997 * 109.47485 * 59.99399 * 1 2 3 27 27 H 1.09000 * 109.46869 * 240.00776 * 2 1 3 28 28 H 1.08997 * 109.47485 * 120.00601 * 2 1 3 29 29 H 1.09000 * 109.46677 * 60.00658 * 3 2 1 30 30 H 1.08997 * 109.47494 * 300.00595 * 3 2 1 31 31 H 1.09001 * 109.46748 * 65.21673 * 4 3 2 32 32 H 1.09004 * 109.47316 * 305.21483 * 4 3 2 33 33 H 1.09006 * 109.46700 * 49.11728 * 6 5 4 34 34 H 1.08999 * 109.47175 * 169.11575 * 6 5 4 35 35 H 0.96995 * 119.99832 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.47030 * 316.60371 * 15 5 4 37 37 H 1.08999 * 109.47298 * 196.60411 * 15 5 4 38 38 H 1.08004 * 119.61666 * 179.97438 * 19 17 16 39 39 H 1.08005 * 119.61132 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8218 0.1265 6 6 3.5533 3.6620 -0.9669 7 6 4.2279 3.2694 -2.2560 8 1 4.8994 2.4238 -2.2782 9 6 3.9878 3.9895 -3.4070 10 7 4.5770 3.6471 -4.5318 11 14 2.8269 5.4524 -3.3683 12 1 3.5936 6.6847 -3.0536 13 1 2.1734 5.6009 -4.6934 14 1 1.7907 5.2346 -2.3270 15 6 3.7046 3.3892 1.4342 16 6 4.6235 2.8310 2.4901 17 6 5.8898 3.3639 2.6837 18 17 6.4416 4.6939 1.7140 19 6 6.7049 2.8255 3.6631 20 7 6.2911 1.8184 4.4068 21 6 5.0945 1.2867 4.2512 22 6 4.2233 1.7725 3.2928 23 17 2.6503 1.0653 3.0953 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 3.9337 1.0116 -0.9322 32 1 3.9330 0.8501 0.8405 33 1 2.4765 3.5229 -1.0633 34 1 3.7664 4.7086 -0.7495 35 1 4.4078 4.1535 -5.3416 36 1 2.6738 3.1293 1.6753 37 1 3.8072 4.4738 1.3996 38 1 7.6922 3.2342 3.8199 39 1 4.7911 0.4621 4.8793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137608579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:44 Heat of formation + Delta-G solvation = 3.374943 kcal Electronic energy + Delta-G solvation = -22631.171987 eV Core-core repulsion = 19238.727404 eV Total energy + Delta-G solvation = -3392.444583 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55549 -39.30418 -37.80930 -37.50687 -35.47968 -34.88599 -33.60861 -31.99388 -30.28031 -29.48688 -26.83764 -24.95366 -24.57954 -23.39003 -22.49241 -20.94842 -18.90466 -18.34074 -18.04382 -17.21823 -17.00351 -16.42131 -16.18664 -15.89509 -15.51631 -15.30448 -14.93419 -14.48148 -14.29007 -13.99575 -13.75364 -13.53077 -13.35813 -13.15408 -12.88608 -12.72564 -12.52899 -12.44740 -12.40733 -12.26237 -11.97112 -11.93846 -11.82545 -11.69460 -11.41111 -11.27492 -10.77994 -10.73844 -10.49504 -9.92306 -8.95519 -8.24535 -6.25514 -0.30589 -0.17978 0.77567 1.16343 1.34341 1.34941 1.44857 2.35173 2.38595 3.07926 3.19344 3.34699 3.41338 3.55244 3.83552 3.95772 4.01112 4.07174 4.28663 4.32274 4.40997 4.47906 4.57919 4.70769 4.76941 4.80955 4.87292 4.96155 5.04307 5.10003 5.16522 5.20938 5.32794 5.42261 5.48812 5.59047 5.98109 6.33933 6.58471 6.62651 6.79922 7.36461 8.92340 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.006221 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.180736 B = 4499.998874 C = 6419.821482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.147 4.147 4 C 0.071 3.929 5 N -0.524 5.524 6 C 0.174 3.826 7 C -0.499 4.499 8 H 0.036 0.964 9 C 0.010 3.990 10 N -0.949 5.949 11 Si 0.936 3.064 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.248 1.248 15 C 0.075 3.925 16 C -0.020 4.020 17 C -0.072 4.072 18 Cl -0.040 7.040 19 C 0.116 3.884 20 N -0.467 5.467 21 C 0.119 3.881 22 C -0.082 4.082 23 Cl -0.030 7.030 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.001 0.999 34 H 0.023 0.977 35 H 0.264 0.736 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.192 0.808 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -3.580 20.011 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.186 4.186 4 C -0.057 4.057 5 N -0.246 5.246 6 C 0.048 3.952 7 C -0.538 4.538 8 H 0.054 0.946 9 C -0.187 4.187 10 N -0.591 5.591 11 Si 0.760 3.240 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.172 1.172 15 C -0.052 4.052 16 C -0.029 4.029 17 C -0.102 4.102 18 Cl -0.011 7.011 19 C -0.041 4.041 20 N -0.176 5.176 21 C -0.039 4.039 22 C -0.112 4.112 23 Cl -0.001 7.001 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.019 0.981 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.209 0.791 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.017 -3.804 20.322 20.894 hybrid contribution -1.607 1.129 -1.589 2.526 sum -4.624 -2.675 18.733 19.480 Atomic orbital electron populations 1.21735 0.95049 1.02088 1.01527 1.21397 0.96472 0.95556 1.01797 1.22165 0.96977 0.98214 1.01268 1.22017 0.93162 0.89631 1.00888 1.62011 1.59720 1.02681 1.00230 1.19974 0.93568 0.92597 0.89095 1.21144 1.26014 1.14032 0.92606 0.94589 1.25727 0.97620 1.00365 0.94941 1.70046 1.45708 1.42485 1.00811 0.85876 0.80031 0.80012 0.78051 1.19357 1.21065 1.17181 1.21199 0.96226 0.99721 0.88101 1.20140 0.94113 0.93636 0.95053 1.22048 0.95032 0.95703 0.97376 1.98421 1.88717 1.43929 1.70030 1.23222 1.00272 0.91421 0.89196 1.68032 1.15292 1.09456 1.24782 1.23286 0.87675 0.98562 0.94377 1.22062 0.91139 0.97616 1.00368 1.98390 1.23194 1.82010 1.96522 0.91520 0.92489 0.93603 0.92976 0.91236 0.91194 0.93632 0.93346 0.90981 0.98110 0.95847 0.92676 0.91362 0.89649 0.79083 0.78494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.91 71.98 0.71 -2.60 16 2 C -0.11 -3.01 5.93 30.60 0.18 -2.83 16 3 C -0.15 -4.68 3.76 30.60 0.12 -4.56 16 4 C 0.07 2.57 4.68 86.30 0.40 2.98 16 5 N -0.52 -20.48 4.58 -905.36 -4.14 -24.63 16 6 C 0.17 8.00 3.59 85.56 0.31 8.31 16 7 C -0.50 -28.26 9.23 25.60 0.24 -28.03 16 8 H 0.04 2.30 7.50 -2.91 -0.02 2.28 16 9 C 0.01 0.60 5.47 84.65 0.46 1.06 16 10 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 11 Si 0.94 43.67 27.37 68.60 1.88 45.55 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 14 H -0.25 -10.68 6.69 99.48 0.67 -10.01 16 15 C 0.08 2.36 4.32 85.56 0.37 2.73 16 16 C -0.02 -0.54 5.01 -19.62 -0.10 -0.64 16 17 C -0.07 -1.92 6.34 22.41 0.14 -1.78 16 18 Cl -0.04 -1.17 27.66 -2.72 -0.08 -1.25 16 19 C 0.12 2.60 10.98 84.71 0.93 3.53 16 20 N -0.47 -10.37 10.36 -195.65 -2.03 -12.40 16 21 C 0.12 2.37 10.99 84.71 0.93 3.30 16 22 C -0.08 -1.90 5.68 22.41 0.13 -1.77 16 23 Cl -0.03 -0.63 23.18 -2.72 -0.06 -0.69 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.63 7.54 -2.39 -0.02 1.62 16 29 H 0.07 2.02 4.84 -2.39 -0.01 2.00 16 30 H 0.04 1.70 6.44 -2.39 -0.02 1.69 16 31 H 0.05 2.10 7.15 -2.39 -0.02 2.08 16 32 H 0.07 2.34 5.81 -2.38 -0.01 2.32 16 33 H 0.00 0.06 5.24 -2.38 -0.01 0.05 16 34 H 0.02 1.07 6.86 -2.39 -0.02 1.06 16 35 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.07 1.98 4.55 -2.39 -0.01 1.97 16 37 H 0.09 2.72 6.89 -2.39 -0.02 2.71 16 38 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 39 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -64.95 333.71 1.72 -63.24 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.03 Total: 9.45 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.82 Total: -20.30 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -5.87 Total: -96.00 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.14 Total: -1.94 kcal Total: -64.95 1.72 -63.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137608579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.610 kcal (2) G-P(sol) polarization free energy of solvation -64.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds