Wall clock time and date at job start Tue Mar 31 2020 11:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47112 * 2 1 4 4 C 1.36938 * 119.99591 * 275.72879 * 3 2 1 5 5 H 1.08003 * 120.00142 * 33.27717 * 4 3 2 6 6 C 1.38810 * 120.00071 * 213.27250 * 4 3 2 7 7 N 1.31616 * 119.99895 * 17.26935 * 6 4 3 8 8 Si 1.86802 * 120.00167 * 197.26289 * 6 4 3 9 9 H 1.48501 * 109.46972 * 60.00514 * 8 6 4 10 10 H 1.48500 * 109.47208 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47326 * 300.00330 * 8 6 4 12 12 C 1.46494 * 120.00387 * 95.73682 * 3 2 1 13 13 H 1.08995 * 109.47545 * 180.08234 * 12 3 2 14 14 C 1.53002 * 109.47537 * 60.07718 * 12 3 2 15 15 C 1.53007 * 109.46779 * 300.08208 * 12 3 2 16 16 N 1.46506 * 109.46980 * 304.99681 * 15 12 3 17 17 C 1.34768 * 119.99951 * 179.97438 * 16 15 12 18 18 O 1.21728 * 120.00115 * 0.02562 * 17 16 15 19 19 C 1.46439 * 120.00137 * 179.97438 * 17 16 15 20 20 S 1.75830 * 125.46098 * 0.03253 * 19 17 16 21 21 C 1.70609 * 91.58502 * 179.97438 * 20 19 17 22 22 C 1.33768 * 110.99896 * 359.97438 * 21 20 19 23 23 C 1.36792 * 125.46339 * 180.02562 * 19 17 16 24 24 Cl 1.73602 * 123.38049 * 359.97438 * 23 19 17 25 25 H 1.09005 * 109.46885 * 300.00190 * 1 2 3 26 26 H 1.09001 * 109.47041 * 59.99861 * 1 2 3 27 27 H 1.08992 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47000 * 239.99302 * 2 1 3 29 29 H 1.09001 * 109.46810 * 119.99390 * 2 1 3 30 30 H 0.97000 * 120.00556 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46732 * 60.00213 * 14 12 3 32 32 H 1.08991 * 109.47467 * 180.02562 * 14 12 3 33 33 H 1.08995 * 109.47124 * 300.00773 * 14 12 3 34 34 H 1.08995 * 109.46920 * 185.00227 * 15 12 3 35 35 H 1.08997 * 109.47248 * 65.00038 * 15 12 3 36 36 H 0.96995 * 119.99682 * 0.02562 * 16 15 12 37 37 H 1.08000 * 124.49573 * 179.73689 * 21 20 19 38 38 H 1.08003 * 122.44840 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0661 -1.1800 5 1 1.4370 1.8810 -1.9832 6 6 3.1502 2.9985 -1.3440 7 7 4.1871 2.9916 -0.5335 8 14 3.0447 4.2628 -2.7151 9 1 1.8245 5.0894 -2.5334 10 1 4.2451 5.1362 -2.6765 11 1 2.9810 3.5676 -4.0257 12 6 2.3821 2.0296 1.2623 13 1 2.7192 3.0471 1.0643 14 6 3.5078 1.2413 1.9349 15 6 1.1631 2.0669 2.1862 16 7 0.0467 2.7176 1.4957 17 6 -1.1388 2.8633 2.1199 18 8 -1.2819 2.4547 3.2576 19 6 -2.2545 3.5141 1.4300 20 16 -2.2072 4.1555 -0.2065 21 6 -3.8341 4.6596 -0.1066 22 6 -4.3579 4.3552 1.0860 23 6 -3.5006 3.7205 1.9552 24 17 -3.9555 3.2288 3.5568 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.8964 3.6434 -0.6478 31 1 4.3762 1.2147 1.2766 32 1 3.7781 1.7234 2.8742 33 1 3.1707 0.2238 2.1329 34 1 1.4081 2.6270 3.0886 35 1 0.8802 1.0494 2.4557 36 1 0.1607 3.0428 0.5890 37 1 -4.3687 5.1615 -0.8995 38 1 -5.3786 4.5918 1.3481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153506999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:39 Heat of formation + Delta-G solvation = 11.926191 kcal Electronic energy + Delta-G solvation = -22790.514089 eV Core-core repulsion = 19400.484021 eV Total energy + Delta-G solvation = -3390.030067 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.44925 -37.90272 -36.78272 -35.98276 -33.68063 -31.90673 -31.24109 -29.79558 -28.17792 -26.00604 -24.36342 -23.94247 -21.79276 -20.99579 -19.57595 -19.17887 -18.28629 -16.91958 -16.31638 -15.49930 -15.23639 -14.96568 -14.52392 -14.27850 -13.68551 -13.55543 -13.36387 -13.09910 -12.82938 -12.68415 -12.33047 -12.07823 -11.85590 -11.51797 -11.44737 -11.22005 -11.07771 -10.98489 -10.81266 -10.72718 -10.66463 -10.34446 -10.09583 -9.65577 -9.53948 -9.46008 -8.98557 -8.55027 -8.53172 -8.40200 -6.69507 -5.90864 -3.39645 0.39035 1.19095 1.68763 2.17717 2.52199 3.29017 3.35902 3.37395 3.46183 3.62364 4.39178 4.80208 5.00693 5.18491 5.24114 5.37597 5.56807 5.80978 5.87180 5.93299 6.04994 6.17231 6.24912 6.37148 6.47122 6.54024 6.60230 6.67271 6.82392 6.90439 6.99196 7.15713 7.45725 7.55457 7.74397 8.03808 8.40460 8.61139 9.13391 9.74852 10.32316 11.15780 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.005183 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.567569 B = 5400.522739 C = 6480.882367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.265 4.265 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.695 5.695 17 C 0.575 3.425 18 O -0.528 6.528 19 C -0.254 4.254 20 S 0.265 5.735 21 C -0.238 4.238 22 C -0.144 4.144 23 C 0.007 3.993 24 Cl -0.022 7.022 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.255 0.745 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.408 0.592 37 H 0.175 0.825 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.019 2.684 1.701 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.395 4.395 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.068 3.932 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.022 4.022 16 N -0.346 5.346 17 C 0.359 3.641 18 O -0.407 6.407 19 C -0.376 4.376 20 S 0.532 5.468 21 C -0.376 4.376 22 C -0.176 4.176 23 C -0.035 4.035 24 Cl 0.007 6.993 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.245 0.755 37 H 0.192 0.808 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.834 2.528 1.494 12.193 hybrid contribution -1.248 0.780 -0.036 1.472 sum -13.082 3.308 1.458 13.572 Atomic orbital electron populations 1.22461 1.00059 0.99089 1.01498 1.20760 0.91624 0.87408 0.98791 1.43881 1.75995 1.08303 1.02240 1.19046 1.08665 1.18352 0.93397 0.91847 1.25149 0.94509 1.01324 0.97770 1.69989 1.07803 1.35917 1.39515 0.86523 0.77147 0.81714 0.82328 1.20760 1.21641 1.20792 1.20511 0.88855 0.99607 0.84218 0.88213 1.22011 1.01056 0.97966 0.99249 1.22237 0.87747 0.96385 0.95857 1.45867 1.10710 1.59156 1.18843 1.16803 0.81738 0.79698 0.85835 1.90840 1.82666 1.50056 1.17186 1.24798 0.99052 1.13160 1.00622 1.83727 1.05951 1.49442 1.07681 1.25252 1.01629 1.08281 1.02427 1.19695 1.01715 1.03248 0.92933 1.20282 0.92649 1.00918 0.89696 1.98384 1.91793 1.89537 1.19598 0.93041 0.93451 0.94783 0.94047 0.94462 0.93454 0.90243 0.94800 0.95099 0.92605 0.92479 0.75504 0.80760 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.87 37.16 0.37 -2.72 16 2 C 0.14 2.79 5.67 -4.04 -0.02 2.77 16 3 N -0.58 -12.81 1.85 -165.66 -0.31 -13.12 16 4 C -0.27 -6.40 9.26 -15.06 -0.14 -6.54 16 5 H 0.06 1.53 7.89 -52.48 -0.41 1.12 16 6 C 0.01 0.32 4.85 -17.43 -0.08 0.23 16 7 N -0.89 -23.14 10.60 55.49 0.59 -22.55 16 8 Si 0.89 19.72 29.59 -169.99 -5.03 14.69 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.18 3.70 1.92 -67.93 -0.13 3.57 16 13 H 0.10 2.39 6.04 -51.93 -0.31 2.07 16 14 C -0.14 -2.89 9.05 37.16 0.34 -2.55 16 15 C 0.10 1.97 4.34 -4.03 -0.02 1.95 16 16 N -0.70 -12.86 3.98 -61.69 -0.25 -13.10 16 17 C 0.57 10.60 7.54 -12.96 -0.10 10.50 16 18 O -0.53 -10.93 15.09 5.16 0.08 -10.85 16 19 C -0.25 -4.00 6.45 -36.80 -0.24 -4.24 16 20 S 0.27 3.39 22.15 -107.50 -2.38 1.01 16 21 C -0.24 -2.43 10.92 29.16 0.32 -2.12 16 22 C -0.14 -1.63 10.06 -41.38 -0.42 -2.05 16 23 C 0.01 0.10 6.40 -40.34 -0.26 -0.16 16 24 Cl -0.02 -0.33 27.24 -51.86 -1.41 -1.74 16 25 H 0.05 0.96 4.99 -51.93 -0.26 0.70 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 29 H 0.04 0.72 6.45 -51.93 -0.33 0.38 16 30 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.08 1.82 7.40 -51.93 -0.38 1.43 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.11 7.05 -51.93 -0.37 0.75 16 36 H 0.41 7.66 7.00 -40.82 -0.29 7.38 16 37 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 336.71 15.07 5.07 5.07 Total: -1.00 -26.99 336.71 -8.81 -35.81 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.80 Total: 6.12 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.38 Total: -1.34 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.04 Total: -48.77 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.38 Total: 1.01 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.41 Total: -1.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.99 -8.81 -35.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153506999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.734 kcal (2) G-P(sol) polarization free energy of solvation -26.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds