Wall clock time and date at job start Tue Mar 31 2020 11:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47112 * 2 1 4 4 C 1.36938 * 119.99591 * 275.72879 * 3 2 1 5 5 H 1.08003 * 120.00142 * 33.27717 * 4 3 2 6 6 C 1.38810 * 120.00071 * 213.27250 * 4 3 2 7 7 N 1.31616 * 119.99895 * 17.26935 * 6 4 3 8 8 Si 1.86802 * 120.00167 * 197.26289 * 6 4 3 9 9 H 1.48501 * 109.46972 * 60.00514 * 8 6 4 10 10 H 1.48500 * 109.47208 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47326 * 300.00330 * 8 6 4 12 12 C 1.46494 * 120.00387 * 95.73682 * 3 2 1 13 13 H 1.08995 * 109.47545 * 180.08234 * 12 3 2 14 14 C 1.53002 * 109.47537 * 60.07718 * 12 3 2 15 15 C 1.53007 * 109.46779 * 300.08208 * 12 3 2 16 16 N 1.46506 * 109.46980 * 304.99681 * 15 12 3 17 17 C 1.34768 * 119.99951 * 179.97438 * 16 15 12 18 18 O 1.21728 * 120.00115 * 0.02562 * 17 16 15 19 19 C 1.46439 * 120.00137 * 179.97438 * 17 16 15 20 20 S 1.75830 * 125.46098 * 0.03253 * 19 17 16 21 21 C 1.70609 * 91.58502 * 179.97438 * 20 19 17 22 22 C 1.33768 * 110.99896 * 359.97438 * 21 20 19 23 23 C 1.36792 * 125.46339 * 180.02562 * 19 17 16 24 24 Cl 1.73602 * 123.38049 * 359.97438 * 23 19 17 25 25 H 1.09005 * 109.46885 * 300.00190 * 1 2 3 26 26 H 1.09001 * 109.47041 * 59.99861 * 1 2 3 27 27 H 1.08992 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47000 * 239.99302 * 2 1 3 29 29 H 1.09001 * 109.46810 * 119.99390 * 2 1 3 30 30 H 0.97000 * 120.00556 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46732 * 60.00213 * 14 12 3 32 32 H 1.08991 * 109.47467 * 180.02562 * 14 12 3 33 33 H 1.08995 * 109.47124 * 300.00773 * 14 12 3 34 34 H 1.08995 * 109.46920 * 185.00227 * 15 12 3 35 35 H 1.08997 * 109.47248 * 65.00038 * 15 12 3 36 36 H 0.96995 * 119.99682 * 0.02562 * 16 15 12 37 37 H 1.08000 * 124.49573 * 179.73689 * 21 20 19 38 38 H 1.08003 * 122.44840 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0661 -1.1800 5 1 1.4370 1.8810 -1.9832 6 6 3.1502 2.9985 -1.3440 7 7 4.1871 2.9916 -0.5335 8 14 3.0447 4.2628 -2.7151 9 1 1.8245 5.0894 -2.5334 10 1 4.2451 5.1362 -2.6765 11 1 2.9810 3.5676 -4.0257 12 6 2.3821 2.0296 1.2623 13 1 2.7192 3.0471 1.0643 14 6 3.5078 1.2413 1.9349 15 6 1.1631 2.0669 2.1862 16 7 0.0467 2.7176 1.4957 17 6 -1.1388 2.8633 2.1199 18 8 -1.2819 2.4547 3.2576 19 6 -2.2545 3.5141 1.4300 20 16 -2.2072 4.1555 -0.2065 21 6 -3.8341 4.6596 -0.1066 22 6 -4.3579 4.3552 1.0860 23 6 -3.5006 3.7205 1.9552 24 17 -3.9555 3.2288 3.5568 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.8964 3.6434 -0.6478 31 1 4.3762 1.2147 1.2766 32 1 3.7781 1.7234 2.8742 33 1 3.1707 0.2238 2.1329 34 1 1.4081 2.6270 3.0886 35 1 0.8802 1.0494 2.4557 36 1 0.1607 3.0428 0.5890 37 1 -4.3687 5.1615 -0.8995 38 1 -5.3786 4.5918 1.3481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153506999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:38 Heat of formation + Delta-G solvation = -1.919461 kcal Electronic energy + Delta-G solvation = -22791.114481 eV Core-core repulsion = 19400.484021 eV Total energy + Delta-G solvation = -3390.630460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83044 -39.09452 -38.33452 -37.05934 -35.24924 -33.70342 -32.81430 -30.93900 -29.88740 -27.37918 -25.78137 -25.48659 -23.38216 -22.28207 -21.08967 -20.40739 -19.59509 -18.62246 -17.51594 -16.83601 -16.78056 -16.49616 -15.98778 -15.81160 -15.21985 -14.63060 -14.54344 -14.45545 -14.31391 -13.99091 -13.77675 -13.67255 -13.48756 -13.15315 -12.75696 -12.70898 -12.51013 -12.48598 -12.37564 -12.20394 -12.07754 -11.83912 -11.78756 -11.34391 -11.15915 -10.96645 -10.39645 -10.14396 -9.78431 -9.53928 -8.50640 -7.79008 -5.29292 -0.65913 0.14681 0.76437 1.21604 1.44354 1.53855 1.56349 1.61083 2.11160 2.25729 2.57867 3.35439 3.65941 3.79836 4.02148 4.14948 4.27540 4.47081 4.56982 4.66993 4.70341 4.81850 4.88061 4.93115 4.94803 4.98731 5.02909 5.07823 5.23630 5.33512 5.46315 5.59761 5.71234 5.78263 5.88848 6.52105 6.59558 7.18018 7.27424 7.94972 8.48126 9.24996 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.005183 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.567569 B = 5400.522739 C = 6480.882367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.263 4.263 5 H 0.063 0.937 6 C -0.030 4.030 7 N -0.915 5.915 8 Si 0.946 3.054 9 H -0.268 1.268 10 H -0.302 1.302 11 H -0.282 1.282 12 C 0.182 3.818 13 H 0.071 0.929 14 C -0.134 4.134 15 C 0.116 3.884 16 N -0.696 5.696 17 C 0.575 3.425 18 O -0.560 6.560 19 C -0.297 4.297 20 S 0.264 5.736 21 C -0.203 4.203 22 C -0.153 4.153 23 C 0.010 3.990 24 Cl -0.033 7.033 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.248 0.752 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.407 0.593 37 H 0.217 0.783 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 3.309 0.671 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 N -0.313 5.313 4 C -0.393 4.393 5 H 0.081 0.919 6 C -0.228 4.228 7 N -0.559 5.559 8 Si 0.774 3.226 9 H -0.194 1.194 10 H -0.229 1.229 11 H -0.208 1.208 12 C 0.074 3.926 13 H 0.089 0.911 14 C -0.193 4.193 15 C -0.010 4.010 16 N -0.346 5.346 17 C 0.362 3.638 18 O -0.441 6.441 19 C -0.419 4.419 20 S 0.531 5.469 21 C -0.341 4.341 22 C -0.183 4.183 23 C -0.034 4.034 24 Cl -0.004 7.004 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.243 0.757 37 H 0.233 0.767 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.139 3.144 0.455 14.492 hybrid contribution -0.607 0.575 0.248 0.872 sum -14.746 3.720 0.703 15.224 Atomic orbital electron populations 1.22277 0.98273 1.00256 1.00829 1.20827 0.92855 0.86264 0.98670 1.43995 1.76127 1.09142 1.02011 1.19221 1.08030 1.18130 0.93904 0.91924 1.25713 0.94440 1.02969 0.99688 1.70130 1.08330 1.36354 1.41057 0.85689 0.76933 0.79814 0.80123 1.19354 1.22893 1.20784 1.20354 0.89766 0.98072 0.84359 0.91093 1.21872 0.99551 0.98763 0.99162 1.21967 0.87284 0.96386 0.95316 1.45813 1.10791 1.59290 1.18688 1.17128 0.82064 0.79089 0.85534 1.90807 1.83261 1.51534 1.18500 1.24569 0.98752 1.15973 1.02575 1.83745 1.08147 1.49308 1.05737 1.25726 0.99868 1.05774 1.02750 1.19945 1.02669 1.03039 0.92610 1.20683 0.92825 1.00405 0.89507 1.98379 1.91751 1.89652 1.20622 0.93849 0.93870 0.92673 0.94874 0.93832 0.94273 0.93188 0.93212 0.93895 0.92545 0.92700 0.75667 0.76663 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 9.87 71.98 0.71 -4.73 16 2 C 0.14 5.46 5.67 86.38 0.49 5.95 16 3 N -0.59 -25.99 1.85 -678.02 -1.25 -27.24 16 4 C -0.26 -12.66 9.26 84.03 0.78 -11.88 16 5 H 0.06 2.99 7.89 -2.91 -0.02 2.97 16 6 C -0.03 -1.52 4.85 84.86 0.41 -1.11 16 7 N -0.91 -48.50 10.60 21.65 0.23 -48.27 16 8 Si 0.95 40.44 29.59 68.60 2.03 42.47 16 9 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 10 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 12 C 0.18 7.73 1.92 45.00 0.09 7.82 16 13 H 0.07 3.47 6.04 -2.39 -0.01 3.46 16 14 C -0.13 -5.43 9.05 71.98 0.65 -4.77 16 15 C 0.12 4.45 4.34 86.38 0.37 4.83 16 16 N -0.70 -25.77 3.98 -467.29 -1.86 -27.63 16 17 C 0.58 21.18 7.54 86.38 0.65 21.83 16 18 O -0.56 -23.32 15.09 -4.44 -0.07 -23.39 16 19 C -0.30 -9.05 6.45 24.07 0.16 -8.89 16 20 S 0.26 6.17 22.15 -56.49 -1.25 4.92 16 21 C -0.20 -3.31 10.92 66.80 0.73 -2.58 16 22 C -0.15 -2.92 10.06 21.10 0.21 -2.71 16 23 C 0.01 0.26 6.40 21.78 0.14 0.40 16 24 Cl -0.03 -0.95 27.24 -2.72 -0.07 -1.02 16 25 H 0.04 1.58 4.99 -2.38 -0.01 1.56 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.03 1.34 8.09 -2.39 -0.02 1.32 16 29 H 0.04 1.64 6.45 -2.39 -0.02 1.62 16 30 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 31 H 0.05 2.32 7.40 -2.39 -0.02 2.30 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.59 6.67 -2.39 -0.02 1.57 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 2.13 7.05 -2.39 -0.02 2.11 16 36 H 0.41 15.28 7.00 -92.71 -0.65 14.63 16 37 H 0.22 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -58.67 336.71 3.58 -55.09 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.44 Total: 20.93 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.39 Total: 4.14 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -2.88 Total: -103.14 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.07 Total: -23.39 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.25 Total: 4.92 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.07 Total: -1.02 kcal Total: -58.67 3.58 -55.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153506999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.169 kcal (2) G-P(sol) polarization free energy of solvation -58.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds