Wall clock time and date at job start Tue Mar 31 2020 11:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48495 * 109.47150 * 270.00085 * 3 2 1 5 5 H 1.48499 * 109.47205 * 30.00183 * 3 2 1 6 6 H 1.48499 * 109.47171 * 149.99748 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 C 1.51276 * 120.84883 * 0.02562 * 7 2 1 9 9 C 1.53228 * 108.53512 * 231.32177 * 8 7 2 10 10 C 1.52951 * 109.40999 * 305.37424 * 9 8 7 11 11 H 1.09002 * 109.35571 * 303.53022 * 10 9 8 12 12 N 1.46890 * 109.41671 * 183.70402 * 10 9 8 13 13 C 1.46901 * 110.99961 * 84.64645 * 12 10 9 14 14 F 1.39900 * 109.47000 * 300.00165 * 13 12 10 15 15 F 1.39897 * 109.47248 * 60.00388 * 13 12 10 16 16 C 1.50707 * 109.47109 * 179.97438 * 13 12 10 17 17 C 1.38709 * 120.40063 * 124.99869 * 16 13 12 18 18 C 1.38564 * 118.43935 * 179.97438 * 17 16 13 19 19 C 1.38398 * 119.14420 * 0.02562 * 18 17 16 20 20 Cl 1.73601 * 119.63212 * 180.02562 * 19 18 17 21 21 N 1.31944 * 120.73541 * 0.02562 * 19 18 17 22 22 C 1.31916 * 121.70214 * 359.72809 * 21 19 18 23 23 C 1.52963 * 109.81716 * 63.59625 * 10 9 8 24 24 C 1.51269 * 120.85240 * 179.97438 * 7 2 1 25 25 H 0.97003 * 119.99821 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.62630 * 351.04217 * 8 7 2 27 27 H 1.09003 * 109.62166 * 111.61116 * 8 7 2 28 28 H 1.08999 * 109.47771 * 65.35953 * 9 8 7 29 29 H 1.09003 * 109.47886 * 185.39008 * 9 8 7 30 30 H 1.00901 * 111.00331 * 320.69277 * 12 10 9 31 31 H 1.08003 * 120.78172 * 359.95645 * 17 16 13 32 32 H 1.08000 * 120.42980 * 180.02562 * 18 17 16 33 33 H 1.07994 * 119.60430 * 180.28305 * 22 21 19 34 34 H 1.08997 * 109.48191 * 176.42349 * 23 10 9 35 35 H 1.08997 * 109.49004 * 56.39212 * 23 10 9 36 36 H 1.08995 * 109.62532 * 248.39207 * 24 7 2 37 37 H 1.09001 * 109.62320 * 8.96247 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8230 -3.3825 1.1351 10 6 3.3399 -3.5070 0.9841 11 1 3.5729 -3.9117 -0.0008 12 7 3.8612 -4.4099 2.0188 13 6 3.7587 -5.8124 1.5940 14 9 2.4174 -6.1304 1.3553 15 9 4.4982 -5.9997 0.4213 16 6 4.3024 -6.7067 2.6783 17 6 3.5249 -7.7304 3.1994 18 6 4.0656 -8.5286 4.1947 19 6 5.3544 -8.2790 4.6331 20 17 6.0445 -9.2715 5.8790 21 7 6.0643 -7.2951 4.1145 22 6 5.5824 -6.5194 3.1626 23 6 3.9907 -2.1309 1.1352 24 6 3.5171 -1.2164 0.0000 25 1 -0.4850 0.8401 -0.0004 26 1 0.2037 -2.3409 0.1599 27 1 1.4201 -3.0192 -0.9538 28 1 1.5898 -2.9196 2.0940 29 1 1.3706 -4.3732 1.0900 30 1 3.3889 -4.2630 2.8983 31 1 2.5216 -7.9013 2.8380 32 1 3.4887 -9.3350 4.6229 33 1 6.1949 -5.7267 2.7592 34 1 5.0748 -2.2346 1.0901 35 1 3.7065 -1.6976 2.0941 36 1 3.8772 -1.6005 -0.9544 37 1 3.8983 -0.2077 0.1591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:21 Heat of formation + Delta-G solvation = -72.243069 kcal Electronic energy + Delta-G solvation = -24287.991188 eV Core-core repulsion = 20340.470881 eV Total energy + Delta-G solvation = -3947.520307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.085 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.99765 -47.05152 -40.62015 -37.57231 -37.07048 -34.34431 -33.17396 -32.18813 -30.97301 -29.59153 -27.30828 -25.06637 -24.20673 -22.24149 -21.64581 -21.46390 -19.63131 -18.22086 -17.96050 -17.28889 -17.08366 -16.51447 -15.96052 -14.94452 -14.85640 -14.45902 -14.41479 -14.08705 -13.66167 -13.55136 -13.32029 -13.25925 -12.99107 -12.91590 -12.36325 -12.17356 -12.11271 -11.98854 -11.71249 -11.33479 -11.09084 -10.90218 -10.68737 -10.45552 -10.17196 -10.07477 -10.00611 -9.55774 -9.49997 -9.25205 -8.86229 -8.49714 -8.39226 -6.11904 -4.03170 0.30312 0.69481 1.35773 3.09608 3.15446 3.26012 3.34550 3.34593 3.90572 4.05116 4.23047 4.36339 4.43082 4.45910 4.58999 4.93960 5.15107 5.19558 5.34894 5.51439 5.62273 5.82590 5.95619 6.11830 6.26177 6.46056 6.53274 6.70661 6.86442 6.96156 7.06547 7.14063 7.22314 7.26914 7.40894 7.63817 7.70306 7.80684 8.36452 8.94746 9.52432 10.97582 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.029667 B = 0.002978 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.579054 B = 9399.372391 C = 9687.627135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.488 4.488 8 C 0.014 3.986 9 C -0.142 4.142 10 C 0.090 3.910 11 H 0.077 0.923 12 N -0.693 5.693 13 C 0.496 3.504 14 F -0.208 7.208 15 F -0.177 7.177 16 C -0.193 4.193 17 C -0.028 4.028 18 C -0.160 4.160 19 C 0.189 3.811 20 Cl -0.026 7.026 21 N -0.479 5.479 22 C 0.178 3.822 23 C -0.089 4.089 24 C -0.021 4.021 25 H 0.264 0.736 26 H 0.057 0.943 27 H 0.003 0.997 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.366 0.634 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.180 0.820 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.017 0.983 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.114 -16.533 8.925 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.507 4.507 8 C -0.024 4.024 9 C -0.181 4.181 10 C -0.017 4.017 11 H 0.096 0.904 12 N -0.332 5.332 13 C 0.370 3.630 14 F -0.190 7.190 15 F -0.158 7.158 16 C -0.197 4.197 17 C -0.054 4.054 18 C -0.180 4.180 19 C 0.025 3.975 20 Cl 0.002 6.998 21 N -0.190 5.190 22 C 0.021 3.979 23 C -0.128 4.128 24 C -0.059 4.059 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.021 0.979 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.188 0.812 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.197 0.803 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.493 -16.313 9.119 20.962 hybrid contribution -1.360 0.501 -0.170 1.459 sum 8.133 -15.812 8.949 19.906 Atomic orbital electron populations 1.69844 1.06179 1.26912 1.49945 1.24860 0.94719 0.98606 0.94562 0.86676 0.80002 0.83255 0.78521 1.20422 1.21699 1.18860 1.20062 0.89429 0.91452 1.49774 1.19300 0.98655 0.92803 0.91617 1.22446 0.94002 0.99424 1.02215 1.21727 0.94765 0.92601 0.92655 0.90438 1.61523 1.62617 0.99889 1.09156 1.19328 0.73727 0.89970 0.80005 1.93062 1.36758 1.93967 1.95168 1.93052 1.76958 1.95509 1.50280 1.21151 0.98031 0.99388 1.01170 1.21591 1.00416 0.90943 0.92469 1.21829 0.94731 1.02420 0.99061 1.21884 0.90490 0.92640 0.92465 1.98422 1.85658 1.65824 1.49884 1.67239 1.36798 1.04525 1.10410 1.22602 0.91800 0.94766 0.88747 1.21503 0.97108 0.93306 1.00833 1.19840 0.96681 0.95628 0.93791 0.92613 0.92433 0.97850 0.93003 0.93865 0.81194 0.82580 0.82972 0.80278 0.93990 0.92924 0.96418 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 12.73 55.43 0.71 -24.70 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 3 Si 0.89 20.75 27.53 -169.99 -4.68 16.07 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -5.91 6.10 56.52 0.35 -5.57 16 7 C -0.49 -12.60 5.51 -98.92 -0.55 -13.14 16 8 C 0.01 0.35 5.97 -27.48 -0.16 0.19 16 9 C -0.14 -2.88 5.10 -26.64 -0.14 -3.02 16 10 C 0.09 1.64 2.23 -67.76 -0.15 1.49 16 11 H 0.08 1.53 7.15 -51.93 -0.37 1.16 16 12 N -0.69 -10.16 5.95 -106.48 -0.63 -10.80 16 13 C 0.50 6.87 2.08 -4.97 -0.01 6.86 16 14 F -0.21 -3.08 13.40 2.25 0.03 -3.05 16 15 F -0.18 -2.73 16.24 2.25 0.04 -2.69 16 16 C -0.19 -2.20 5.23 -104.48 -0.55 -2.75 16 17 C -0.03 -0.26 9.54 -39.29 -0.37 -0.64 16 18 C -0.16 -1.36 9.88 -39.40 -0.39 -1.75 16 19 C 0.19 1.95 7.27 -17.44 -0.13 1.83 16 20 Cl -0.03 -0.24 29.11 -51.86 -1.51 -1.75 16 21 N -0.48 -5.67 10.34 -10.36 -0.11 -5.78 16 22 C 0.18 2.02 10.64 -17.55 -0.19 1.83 16 23 C -0.09 -1.73 5.54 -26.61 -0.15 -1.88 16 24 C -0.02 -0.48 5.60 -27.46 -0.15 -0.64 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.06 1.56 7.07 -51.93 -0.37 1.19 16 27 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.83 5.91 -51.93 -0.31 0.52 16 30 H 0.37 4.95 8.48 -39.29 -0.33 4.61 16 31 H 0.16 1.26 7.27 -52.48 -0.38 0.88 16 32 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.04 0.85 4.59 -51.93 -0.24 0.61 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -28.25 321.28 -8.50 -36.74 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.15 Total: 0.82 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -3.03 Total: -9.71 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.04 Total: -41.27 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.07 Total: -5.74 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.68 Total: 16.07 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.51 Total: -1.75 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.25 -8.50 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.503 kcal (2) G-P(sol) polarization free energy of solvation -28.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds