Wall clock time and date at job start Tue Mar 31 2020 11:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48495 * 109.47150 * 270.00085 * 3 2 1 5 5 H 1.48499 * 109.47205 * 30.00183 * 3 2 1 6 6 H 1.48499 * 109.47171 * 149.99748 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 C 1.51276 * 120.84883 * 0.02562 * 7 2 1 9 9 C 1.53228 * 108.53512 * 231.32177 * 8 7 2 10 10 C 1.52951 * 109.40999 * 305.37424 * 9 8 7 11 11 H 1.09002 * 109.35571 * 303.53022 * 10 9 8 12 12 N 1.46890 * 109.41671 * 183.70402 * 10 9 8 13 13 C 1.46901 * 110.99961 * 84.64645 * 12 10 9 14 14 F 1.39900 * 109.47000 * 300.00165 * 13 12 10 15 15 F 1.39897 * 109.47248 * 60.00388 * 13 12 10 16 16 C 1.50707 * 109.47109 * 179.97438 * 13 12 10 17 17 C 1.38709 * 120.40063 * 124.99869 * 16 13 12 18 18 C 1.38564 * 118.43935 * 179.97438 * 17 16 13 19 19 C 1.38398 * 119.14420 * 0.02562 * 18 17 16 20 20 Cl 1.73601 * 119.63212 * 180.02562 * 19 18 17 21 21 N 1.31944 * 120.73541 * 0.02562 * 19 18 17 22 22 C 1.31916 * 121.70214 * 359.72809 * 21 19 18 23 23 C 1.52963 * 109.81716 * 63.59625 * 10 9 8 24 24 C 1.51269 * 120.85240 * 179.97438 * 7 2 1 25 25 H 0.97003 * 119.99821 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.62630 * 351.04217 * 8 7 2 27 27 H 1.09003 * 109.62166 * 111.61116 * 8 7 2 28 28 H 1.08999 * 109.47771 * 65.35953 * 9 8 7 29 29 H 1.09003 * 109.47886 * 185.39008 * 9 8 7 30 30 H 1.00901 * 111.00331 * 320.69277 * 12 10 9 31 31 H 1.08003 * 120.78172 * 359.95645 * 17 16 13 32 32 H 1.08000 * 120.42980 * 180.02562 * 18 17 16 33 33 H 1.07994 * 119.60430 * 180.28305 * 22 21 19 34 34 H 1.08997 * 109.48191 * 176.42349 * 23 10 9 35 35 H 1.08997 * 109.49004 * 56.39212 * 23 10 9 36 36 H 1.08995 * 109.62532 * 248.39207 * 24 7 2 37 37 H 1.09001 * 109.62320 * 8.96247 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8230 -3.3825 1.1351 10 6 3.3399 -3.5070 0.9841 11 1 3.5729 -3.9117 -0.0008 12 7 3.8612 -4.4099 2.0188 13 6 3.7587 -5.8124 1.5940 14 9 2.4174 -6.1304 1.3553 15 9 4.4982 -5.9997 0.4213 16 6 4.3024 -6.7067 2.6783 17 6 3.5249 -7.7304 3.1994 18 6 4.0656 -8.5286 4.1947 19 6 5.3544 -8.2790 4.6331 20 17 6.0445 -9.2715 5.8790 21 7 6.0643 -7.2951 4.1145 22 6 5.5824 -6.5194 3.1626 23 6 3.9907 -2.1309 1.1352 24 6 3.5171 -1.2164 0.0000 25 1 -0.4850 0.8401 -0.0004 26 1 0.2037 -2.3409 0.1599 27 1 1.4201 -3.0192 -0.9538 28 1 1.5898 -2.9196 2.0940 29 1 1.3706 -4.3732 1.0900 30 1 3.3889 -4.2630 2.8983 31 1 2.5216 -7.9013 2.8380 32 1 3.4887 -9.3350 4.6229 33 1 6.1949 -5.7267 2.7592 34 1 5.0748 -2.2346 1.0901 35 1 3.7065 -1.6976 2.0941 36 1 3.8772 -1.6005 -0.9544 37 1 3.8983 -0.2077 0.1591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:20 Heat of formation + Delta-G solvation = -89.190176 kcal Electronic energy + Delta-G solvation = -24288.726070 eV Core-core repulsion = 20340.470881 eV Total energy + Delta-G solvation = -3948.255188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.085 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.14880 -48.21251 -41.41125 -39.16351 -37.81064 -35.81767 -34.23334 -33.44991 -32.28531 -31.35664 -28.88809 -26.20169 -24.99707 -23.58506 -23.34701 -22.92812 -21.23905 -19.29297 -18.93677 -18.42960 -18.15340 -17.81146 -17.31725 -16.37850 -15.97457 -15.66937 -15.61182 -15.26543 -14.91244 -14.70365 -14.59819 -14.44723 -14.35715 -14.29820 -14.05809 -13.86014 -13.39080 -12.88303 -12.86443 -12.83317 -12.68814 -12.44582 -12.30521 -11.87714 -11.76576 -11.34806 -11.25173 -10.93452 -10.88993 -10.69049 -10.51126 -10.24095 -9.99351 -8.15837 -6.10579 -0.49877 -0.04696 0.61730 1.40763 1.43127 1.51381 2.09074 2.29658 2.42086 2.79898 3.11855 3.16857 3.32117 3.57176 3.68450 3.73962 3.92389 4.07175 4.25149 4.48906 4.49497 4.63072 4.71319 4.79763 4.86123 4.94752 5.00208 5.10856 5.20821 5.28391 5.31512 5.58871 5.60028 5.67749 5.76930 5.77358 6.03337 6.36247 6.44065 6.96162 7.47721 8.95071 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.029667 B = 0.002978 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.579054 B = 9399.372391 C = 9687.627135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.019 3.981 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.244 1.244 7 C -0.498 4.498 8 C 0.010 3.990 9 C -0.129 4.129 10 C 0.102 3.898 11 H 0.066 0.934 12 N -0.681 5.681 13 C 0.496 3.504 14 F -0.214 7.214 15 F -0.187 7.187 16 C -0.200 4.200 17 C -0.024 4.024 18 C -0.146 4.146 19 C 0.179 3.821 20 Cl -0.018 7.018 21 N -0.500 5.500 22 C 0.174 3.826 23 C -0.084 4.084 24 C -0.025 4.025 25 H 0.262 0.738 26 H 0.023 0.977 27 H -0.007 1.007 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.375 0.625 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.182 0.818 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.019 0.981 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.634 -17.696 10.191 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.179 4.179 3 Si 0.768 3.232 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.168 1.168 7 C -0.517 4.517 8 C -0.028 4.028 9 C -0.168 4.168 10 C -0.006 4.006 11 H 0.084 0.916 12 N -0.320 5.320 13 C 0.370 3.630 14 F -0.195 7.195 15 F -0.169 7.169 16 C -0.204 4.204 17 C -0.051 4.051 18 C -0.167 4.167 19 C 0.015 3.985 20 Cl 0.011 6.989 21 N -0.211 5.211 22 C 0.017 3.983 23 C -0.122 4.122 24 C -0.063 4.063 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.011 0.989 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.199 0.801 31 H 0.190 0.810 32 H 0.202 0.798 33 H 0.199 0.801 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.037 0.963 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.040 -17.497 10.401 23.156 hybrid contribution -1.857 0.735 -0.569 2.076 sum 9.183 -16.762 9.832 21.493 Atomic orbital electron populations 1.69991 1.07801 1.27412 1.52289 1.25658 0.95356 1.01974 0.94908 0.85794 0.79525 0.79344 0.78563 1.20300 1.22124 1.16793 1.20678 0.91441 0.91621 1.47958 1.19265 0.96973 0.93752 0.92849 1.22272 0.95711 0.98879 0.99939 1.21382 0.92929 0.93026 0.93265 0.91590 1.61383 1.62082 1.00075 1.08448 1.19476 0.73414 0.89766 0.80348 1.93044 1.37287 1.93936 1.95270 1.93033 1.77155 1.95517 1.51146 1.20933 0.98440 1.00004 1.01015 1.21814 1.00847 0.90181 0.92213 1.22123 0.94054 1.02484 0.98017 1.22187 0.91188 0.92481 0.92639 1.98426 1.85664 1.65407 1.49447 1.67228 1.37568 1.05326 1.10944 1.22615 0.91845 0.94993 0.88845 1.21383 0.98525 0.93011 0.99269 1.19868 0.94427 0.96755 0.95233 0.92921 0.95823 0.98860 0.93418 0.92757 0.80123 0.81040 0.79845 0.80057 0.91609 0.92966 0.96262 0.94178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 12.73 21.45 0.27 -54.64 16 2 C 0.02 1.02 5.46 84.65 0.46 1.49 16 3 Si 0.94 42.53 27.53 68.60 1.89 44.42 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.24 -10.14 6.10 99.48 0.61 -9.53 16 7 C -0.50 -25.80 5.51 -16.17 -0.09 -25.89 16 8 C 0.01 0.49 5.97 30.11 0.18 0.67 16 9 C -0.13 -5.18 5.10 30.65 0.16 -5.02 16 10 C 0.10 3.59 2.23 44.89 0.10 3.69 16 11 H 0.07 2.51 7.15 -2.39 -0.02 2.49 16 12 N -0.68 -18.56 5.95 -490.81 -2.92 -21.48 16 13 C 0.50 12.82 2.08 85.56 0.18 13.00 16 14 F -0.21 -5.95 13.40 44.97 0.60 -5.35 16 15 F -0.19 -5.51 16.24 44.97 0.73 -4.78 16 16 C -0.20 -4.13 5.23 -19.77 -0.10 -4.23 16 17 C -0.02 -0.39 9.54 22.46 0.21 -0.18 16 18 C -0.15 -2.04 9.88 22.39 0.22 -1.82 16 19 C 0.18 3.27 7.27 84.71 0.62 3.89 16 20 Cl -0.02 -0.29 29.11 -2.72 -0.08 -0.37 16 21 N -0.50 -10.92 10.34 -186.70 -1.93 -12.85 16 22 C 0.17 3.64 10.64 84.66 0.90 4.54 16 23 C -0.08 -3.07 5.54 30.67 0.17 -2.90 16 24 C -0.02 -1.09 5.60 30.12 0.17 -0.92 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.02 1.31 7.07 -2.39 -0.02 1.30 16 27 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 2.04 5.91 -2.39 -0.01 2.03 16 30 H 0.37 9.27 8.48 -89.69 -0.76 8.51 16 31 H 0.17 2.23 7.27 -2.91 -0.02 2.21 16 32 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 33 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.04 1.72 4.59 -2.39 -0.01 1.71 16 Total: -1.00 -61.26 321.28 2.01 -59.26 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.27 Total: 9.48 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 3.17 Total: -13.69 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -4.58 Total: -88.97 kcal Atomic # 9 Polarization: -11.46 SS G_CDS: 1.33 Total: -10.12 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.89 Total: 44.42 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -61.26 2.01 -59.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.935 kcal (2) G-P(sol) polarization free energy of solvation -61.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds