Wall clock time and date at job start Tue Mar 31 2020 11:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86804 * 120.00116 * 2 1 4 4 H 1.48500 * 109.46999 * 240.00145 * 3 2 1 5 5 H 1.48501 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47120 * 119.99669 * 3 2 1 7 7 C 1.39864 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99761 * 163.64849 * 7 2 1 9 9 C 1.41188 * 120.00388 * 343.65049 * 7 2 1 10 10 C 1.40786 * 120.56895 * 155.38894 * 9 7 2 11 11 N 1.31475 * 120.39204 * 180.02562 * 10 9 7 12 12 C 1.32746 * 121.73833 * 0.02562 * 11 10 9 13 13 N 1.38407 * 119.43611 * 179.72313 * 12 11 10 14 14 C 1.47636 * 111.00234 * 63.67123 * 13 12 11 15 15 C 1.50814 * 108.05499 * 150.34721 * 14 13 12 16 16 C 1.53817 * 111.62248 * 95.05595 * 15 14 13 17 17 C 1.54170 * 111.97340 * 319.04811 * 16 15 14 18 18 F 1.39899 * 108.85511 * 197.68187 * 17 16 15 19 19 F 1.39900 * 108.77415 * 79.23363 * 17 16 15 20 20 C 1.50756 * 112.60505 * 318.48409 * 17 16 15 21 21 C 1.39773 * 111.00058 * 294.78148 * 13 12 11 22 22 C 1.39793 * 121.12526 * 359.97438 * 12 11 10 23 23 Cl 1.73604 * 120.25986 * 179.97438 * 22 12 11 24 24 C 1.36666 * 119.47585 * 0.02562 * 22 12 11 25 25 H 0.97008 * 119.99742 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.80804 * 359.97438 * 10 9 7 27 27 H 1.08996 * 109.74880 * 269.98941 * 14 13 12 28 28 H 1.08999 * 109.74529 * 30.71279 * 14 13 12 29 29 H 1.09006 * 109.05104 * 334.50913 * 15 14 13 30 30 H 1.08999 * 108.99518 * 215.57511 * 15 14 13 31 31 H 1.08998 * 108.98394 * 198.40013 * 16 15 14 32 32 H 1.09006 * 108.91518 * 79.64221 * 16 15 14 33 33 H 1.09003 * 109.54684 * 333.15645 * 20 17 16 34 34 H 1.08998 * 109.54561 * 212.87837 * 20 17 16 35 35 H 1.09002 * 109.01935 * 309.71674 * 21 13 12 36 36 H 1.09000 * 109.02396 * 68.61189 * 21 13 12 37 37 H 1.07995 * 120.79733 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0556 -1.2303 -0.2628 9 6 1.3452 -2.4092 0.3453 10 6 1.8210 -3.6501 -0.1192 11 7 1.2006 -4.7634 0.2035 12 6 0.1159 -4.7617 0.9688 13 7 -0.5029 -5.9615 1.2743 14 6 0.3891 -6.8299 2.0680 15 6 -0.4698 -7.6965 2.9545 16 6 -0.7443 -9.0672 2.3128 17 6 -1.0318 -8.9501 0.8027 18 9 -1.6561 -10.1244 0.3689 19 9 0.1826 -8.8066 0.1230 20 6 -1.9175 -7.7762 0.4708 21 6 -1.0319 -6.5587 0.1267 22 6 -0.4150 -3.5684 1.4672 23 17 -1.8350 -3.5923 2.4656 24 6 0.1921 -2.3828 1.1614 25 1 -0.4850 0.8401 -0.0004 26 1 2.7004 -3.6878 -0.7450 27 1 0.9808 -7.4573 1.4016 28 1 1.0498 -6.2169 2.6810 29 1 -1.4189 -7.1913 3.1341 30 1 0.0397 -7.8449 3.9066 31 1 -1.6047 -9.5224 2.8033 32 1 0.1262 -9.7067 2.4594 33 1 -2.5457 -7.5390 1.3295 34 1 -2.5456 -8.0237 -0.3850 35 1 -1.6311 -5.8245 -0.4119 36 1 -0.2126 -6.8864 -0.5132 37 1 -0.1996 -1.4484 1.5352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163980094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:29 Heat of formation + Delta-G solvation = -73.422609 kcal Electronic energy + Delta-G solvation = -24787.492604 eV Core-core repulsion = 20839.921148 eV Total energy + Delta-G solvation = -3947.571455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.085 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.96043 -46.85842 -39.53847 -37.49775 -35.41739 -34.50498 -33.32907 -31.79664 -30.59542 -29.50969 -26.71117 -25.06132 -24.42116 -22.35977 -21.41275 -20.17349 -20.05807 -17.64871 -17.45734 -16.88264 -16.67654 -16.07100 -15.60753 -15.13068 -15.04874 -14.29715 -13.73841 -13.68809 -13.62694 -13.31522 -13.05488 -12.85396 -12.70095 -12.42213 -12.34727 -11.96595 -11.79107 -11.75379 -11.46948 -11.36739 -10.94637 -10.88444 -10.70629 -10.66963 -10.50532 -10.44816 -10.42683 -9.86542 -9.52918 -8.55315 -8.24641 -7.70251 -7.61895 -7.04707 -4.69593 2.31396 2.70125 2.92518 2.93919 3.00799 3.29588 3.70779 3.86500 4.26216 4.31994 4.33336 4.47539 4.60524 5.04381 5.12512 5.32273 5.44537 5.50603 5.63786 5.71034 5.83811 5.90816 5.95076 6.02559 6.11282 6.25580 6.43345 6.49740 6.54261 6.62630 6.79379 6.90152 7.01044 7.51123 7.67193 7.82009 8.03769 8.25866 8.43742 8.52082 9.31881 9.84558 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.026719 B = 0.003774 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.693051 B = 7417.038240 C = 7888.924316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.437 4.437 8 H 0.088 0.912 9 C 0.074 3.926 10 C -0.012 4.012 11 N -0.468 5.468 12 C 0.140 3.860 13 N -0.474 5.474 14 C 0.059 3.941 15 C -0.115 4.115 16 C -0.154 4.154 17 C 0.290 3.710 18 F -0.212 7.212 19 F -0.197 7.197 20 C -0.162 4.162 21 C 0.080 3.920 22 C -0.007 4.007 23 Cl -0.099 7.099 24 C -0.136 4.136 25 H 0.289 0.711 26 H 0.132 0.868 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 -8.754 4.057 10.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.148 4.148 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.106 0.894 9 C 0.069 3.931 10 C -0.177 4.177 11 N -0.178 5.178 12 C -0.088 4.088 13 N -0.195 5.195 14 C -0.068 4.068 15 C -0.153 4.153 16 C -0.192 4.192 17 C 0.254 3.746 18 F -0.193 7.193 19 F -0.178 7.178 20 C -0.200 4.200 21 C -0.049 4.049 22 C -0.038 4.038 23 Cl -0.071 7.071 24 C -0.162 4.162 25 H 0.100 0.900 26 H 0.149 0.851 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.273 -9.361 4.074 10.721 hybrid contribution 0.505 1.274 -0.323 1.408 sum -2.767 -8.087 3.751 9.334 Atomic orbital electron populations 1.69796 1.07750 1.30327 1.32248 1.26049 0.94882 1.01936 0.91952 0.86202 0.80096 0.79347 0.80314 1.18646 1.20026 1.18483 1.19560 0.97924 0.90626 1.38481 0.89379 1.18473 0.91371 0.93870 0.89346 1.22378 1.02663 0.87510 1.05134 1.67161 1.07201 1.32474 1.10939 1.18268 0.96000 0.88433 1.06083 1.56468 1.36200 1.03853 1.23021 1.21922 0.93810 0.94916 0.96122 1.21416 1.02404 0.92957 0.98484 1.22899 1.04060 1.00733 0.91485 1.21165 0.79182 0.83047 0.91203 1.92985 1.82946 1.51970 1.91447 1.92960 1.46942 1.95587 1.82320 1.22616 0.98857 0.93802 1.04767 1.20787 0.97481 0.94332 0.92311 1.21164 0.90230 0.94628 0.97768 1.98254 1.40680 1.98978 1.69180 1.21353 0.98583 0.96030 1.00237 0.90028 0.85099 0.92303 0.90932 0.89744 0.90957 0.89339 0.90060 0.87990 0.89213 0.90655 0.93438 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.36 10.91 55.54 0.61 -17.75 16 2 C 0.07 1.64 5.19 -17.34 -0.09 1.55 16 3 Si 0.92 16.92 29.59 -169.99 -5.03 11.89 16 4 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 5 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.44 -10.41 9.07 -37.85 -0.34 -10.75 16 8 H 0.09 1.97 7.90 -52.48 -0.41 1.56 16 9 C 0.07 1.82 5.59 -106.66 -0.60 1.23 16 10 C -0.01 -0.29 10.97 -16.74 -0.18 -0.47 16 11 N -0.47 -10.75 9.85 -11.75 -0.12 -10.86 16 12 C 0.14 3.04 4.90 -155.05 -0.76 2.28 16 13 N -0.47 -8.61 3.27 -178.17 -0.58 -9.20 16 14 C 0.06 0.96 5.14 -4.52 -0.02 0.94 16 15 C -0.11 -1.43 5.41 -27.40 -0.15 -1.58 16 16 C -0.15 -1.75 5.42 -25.69 -0.14 -1.89 16 17 C 0.29 3.97 1.97 -27.24 -0.05 3.91 16 18 F -0.21 -2.98 16.93 2.25 0.04 -2.94 16 19 F -0.20 -3.20 12.85 2.25 0.03 -3.17 16 20 C -0.16 -2.20 5.37 -27.10 -0.15 -2.35 16 21 C 0.08 1.38 4.71 -6.75 -0.03 1.35 16 22 C -0.01 -0.17 6.32 -39.57 -0.25 -0.42 16 23 Cl -0.10 -1.94 28.43 -51.86 -1.47 -3.41 16 24 C -0.14 -3.28 8.51 -38.99 -0.33 -3.61 16 25 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 26 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 27 H 0.06 1.02 5.56 -51.93 -0.29 0.73 16 28 H 0.07 1.27 7.80 -51.93 -0.40 0.87 16 29 H 0.08 1.09 7.26 -51.93 -0.38 0.71 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.28 7.11 -51.93 -0.37 0.91 16 34 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 35 H 0.08 1.37 7.97 -51.93 -0.41 0.96 16 36 H 0.05 0.91 6.40 -51.93 -0.33 0.58 16 37 H 0.14 3.45 6.21 -52.49 -0.33 3.12 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -25.20 316.77 -9.02 -34.22 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -4.17 Total: 6.26 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -3.10 Total: -9.82 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.09 Total: -37.81 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.07 Total: -6.11 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -1.47 Total: -3.41 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.20 -9.02 -34.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163980094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.198 kcal (2) G-P(sol) polarization free energy of solvation -25.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds