Wall clock time and date at job start Tue Mar 31 2020 11:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86804 * 120.00116 * 2 1 4 4 H 1.48500 * 109.46999 * 240.00145 * 3 2 1 5 5 H 1.48501 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47120 * 119.99669 * 3 2 1 7 7 C 1.39864 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99761 * 163.64849 * 7 2 1 9 9 C 1.41188 * 120.00388 * 343.65049 * 7 2 1 10 10 C 1.40786 * 120.56895 * 155.38894 * 9 7 2 11 11 N 1.31475 * 120.39204 * 180.02562 * 10 9 7 12 12 C 1.32746 * 121.73833 * 0.02562 * 11 10 9 13 13 N 1.38407 * 119.43611 * 179.72313 * 12 11 10 14 14 C 1.47636 * 111.00234 * 63.67123 * 13 12 11 15 15 C 1.50814 * 108.05499 * 150.34721 * 14 13 12 16 16 C 1.53817 * 111.62248 * 95.05595 * 15 14 13 17 17 C 1.54170 * 111.97340 * 319.04811 * 16 15 14 18 18 F 1.39899 * 108.85511 * 197.68187 * 17 16 15 19 19 F 1.39900 * 108.77415 * 79.23363 * 17 16 15 20 20 C 1.50756 * 112.60505 * 318.48409 * 17 16 15 21 21 C 1.39773 * 111.00058 * 294.78148 * 13 12 11 22 22 C 1.39793 * 121.12526 * 359.97438 * 12 11 10 23 23 Cl 1.73604 * 120.25986 * 179.97438 * 22 12 11 24 24 C 1.36666 * 119.47585 * 0.02562 * 22 12 11 25 25 H 0.97008 * 119.99742 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.80804 * 359.97438 * 10 9 7 27 27 H 1.08996 * 109.74880 * 269.98941 * 14 13 12 28 28 H 1.08999 * 109.74529 * 30.71279 * 14 13 12 29 29 H 1.09006 * 109.05104 * 334.50913 * 15 14 13 30 30 H 1.08999 * 108.99518 * 215.57511 * 15 14 13 31 31 H 1.08998 * 108.98394 * 198.40013 * 16 15 14 32 32 H 1.09006 * 108.91518 * 79.64221 * 16 15 14 33 33 H 1.09003 * 109.54684 * 333.15645 * 20 17 16 34 34 H 1.08998 * 109.54561 * 212.87837 * 20 17 16 35 35 H 1.09002 * 109.01935 * 309.71674 * 21 13 12 36 36 H 1.09000 * 109.02396 * 68.61189 * 21 13 12 37 37 H 1.07995 * 120.79733 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0556 -1.2303 -0.2628 9 6 1.3452 -2.4092 0.3453 10 6 1.8210 -3.6501 -0.1192 11 7 1.2006 -4.7634 0.2035 12 6 0.1159 -4.7617 0.9688 13 7 -0.5029 -5.9615 1.2743 14 6 0.3891 -6.8299 2.0680 15 6 -0.4698 -7.6965 2.9545 16 6 -0.7443 -9.0672 2.3128 17 6 -1.0318 -8.9501 0.8027 18 9 -1.6561 -10.1244 0.3689 19 9 0.1826 -8.8066 0.1230 20 6 -1.9175 -7.7762 0.4708 21 6 -1.0319 -6.5587 0.1267 22 6 -0.4150 -3.5684 1.4672 23 17 -1.8350 -3.5923 2.4656 24 6 0.1921 -2.3828 1.1614 25 1 -0.4850 0.8401 -0.0004 26 1 2.7004 -3.6878 -0.7450 27 1 0.9808 -7.4573 1.4016 28 1 1.0498 -6.2169 2.6810 29 1 -1.4189 -7.1913 3.1341 30 1 0.0397 -7.8449 3.9066 31 1 -1.6047 -9.5224 2.8033 32 1 0.1262 -9.7067 2.4594 33 1 -2.5457 -7.5390 1.3295 34 1 -2.5456 -8.0237 -0.3850 35 1 -1.6311 -5.8245 -0.4119 36 1 -0.2126 -6.8864 -0.5132 37 1 -0.1996 -1.4484 1.5352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163980094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:28 Heat of formation + Delta-G solvation = -84.730751 kcal Electronic energy + Delta-G solvation = -24787.982962 eV Core-core repulsion = 20839.921148 eV Total energy + Delta-G solvation = -3948.061813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.085 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.08569 -47.99153 -41.14232 -39.02355 -37.10803 -36.10378 -34.67628 -33.03806 -32.38703 -31.19573 -28.10933 -26.48645 -25.78330 -24.05498 -23.10280 -21.56933 -21.17784 -19.42248 -18.69563 -18.18615 -17.92529 -17.48851 -17.12368 -16.76153 -16.40814 -15.95084 -15.07544 -14.95608 -14.80096 -14.61409 -14.43633 -14.25384 -13.95998 -13.94155 -13.67530 -13.65726 -13.26829 -13.09274 -12.89837 -12.77662 -12.57521 -12.43559 -12.07813 -12.00303 -11.75887 -11.72398 -11.56369 -11.51608 -11.21177 -10.30266 -10.04745 -9.39030 -9.25243 -8.76334 -6.51514 0.55338 0.88018 1.40621 1.49880 1.53718 1.55611 2.16299 2.59049 2.82391 2.93832 3.23722 3.38082 3.46624 3.51583 3.97126 4.06757 4.13324 4.28133 4.45923 4.49087 4.54560 4.64933 4.70580 4.75054 4.85523 4.90366 4.97517 5.01552 5.04797 5.14188 5.19943 5.27261 5.42876 5.71645 5.83569 6.24219 6.40071 6.51784 6.65691 6.78950 7.51179 8.15797 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.026719 B = 0.003774 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.693051 B = 7417.038240 C = 7888.924316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.464 4.464 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.027 4.027 11 N -0.478 5.478 12 C 0.143 3.857 13 N -0.468 5.468 14 C 0.060 3.940 15 C -0.106 4.106 16 C -0.146 4.146 17 C 0.283 3.717 18 F -0.213 7.213 19 F -0.216 7.216 20 C -0.152 4.152 21 C 0.083 3.917 22 C -0.017 4.017 23 Cl -0.072 7.072 24 C -0.151 4.151 25 H 0.296 0.704 26 H 0.141 0.859 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 -9.382 5.154 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.181 4.181 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.112 0.888 9 C 0.047 3.953 10 C -0.191 4.191 11 N -0.189 5.189 12 C -0.085 4.085 13 N -0.190 5.190 14 C -0.066 4.066 15 C -0.144 4.144 16 C -0.184 4.184 17 C 0.248 3.752 18 F -0.194 7.194 19 F -0.197 7.197 20 C -0.190 4.190 21 C -0.047 4.047 22 C -0.047 4.047 23 Cl -0.044 7.044 24 C -0.177 4.177 25 H 0.107 0.893 26 H 0.158 0.842 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.936 -10.013 5.170 11.936 hybrid contribution 0.637 1.386 -0.662 1.663 sum -3.299 -8.626 4.509 10.277 Atomic orbital electron populations 1.69841 1.09175 1.31621 1.32574 1.26879 0.95513 1.04896 0.90834 0.85128 0.78724 0.74934 0.80355 1.18059 1.19224 1.18208 1.19856 0.98439 0.91356 1.39595 0.88782 1.18746 0.91976 0.94633 0.89961 1.22570 1.03285 0.87569 1.05659 1.67233 1.07853 1.32367 1.11438 1.18655 0.95300 0.89860 1.04720 1.56642 1.35982 1.03198 1.23207 1.21967 0.94125 0.94616 0.95927 1.21344 1.01780 0.92766 0.98531 1.22895 1.05835 1.00157 0.89495 1.21459 0.78377 0.82862 0.92545 1.92984 1.82874 1.51893 1.91617 1.92933 1.48150 1.95682 1.82940 1.22547 0.98322 0.91958 1.06170 1.20714 0.97096 0.95314 0.91557 1.21277 0.91052 0.94402 0.98007 1.98246 1.38966 1.98941 1.68245 1.21319 0.99221 0.96188 1.01022 0.89303 0.84194 0.93403 0.92630 0.89564 0.88586 0.86404 0.89115 0.86202 0.87878 0.92241 0.95760 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.67 10.91 21.81 0.24 -38.43 16 2 C 0.04 1.67 5.19 85.23 0.44 2.12 16 3 Si 0.99 34.35 29.59 68.60 2.03 36.38 16 4 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 5 H -0.27 -8.90 7.11 99.48 0.71 -8.19 16 6 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 7 C -0.46 -22.59 9.07 23.39 0.21 -22.38 16 8 H 0.09 4.29 7.90 -2.91 -0.02 4.27 16 9 C 0.05 2.62 5.59 -21.18 -0.12 2.50 16 10 C -0.03 -1.32 10.97 85.37 0.94 -0.38 16 11 N -0.48 -22.57 9.85 -191.09 -1.88 -24.45 16 12 C 0.14 6.30 4.90 133.32 0.65 6.96 16 13 N -0.47 -16.83 3.27 -717.60 -2.35 -19.18 16 14 C 0.06 1.90 5.14 85.45 0.44 2.34 16 15 C -0.11 -2.35 5.41 30.16 0.16 -2.19 16 16 C -0.15 -2.82 5.42 31.27 0.17 -2.65 16 17 C 0.28 7.13 1.97 30.26 0.06 7.19 16 18 F -0.21 -5.42 16.93 44.97 0.76 -4.66 16 19 F -0.22 -6.85 12.85 44.97 0.58 -6.27 16 20 C -0.15 -3.82 5.37 30.35 0.16 -3.66 16 21 C 0.08 2.82 4.71 88.07 0.42 3.23 16 22 C -0.02 -0.77 6.32 22.28 0.14 -0.63 16 23 Cl -0.07 -2.78 28.43 -2.72 -0.08 -2.86 16 24 C -0.15 -7.50 8.51 22.65 0.19 -7.31 16 25 H 0.30 12.78 8.30 -92.70 -0.77 12.01 16 26 H 0.14 6.28 8.06 -2.91 -0.02 6.26 16 27 H 0.05 1.64 5.56 -2.39 -0.01 1.62 16 28 H 0.06 1.93 7.80 -2.39 -0.02 1.92 16 29 H 0.09 1.93 7.26 -2.38 -0.02 1.91 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.12 2.62 7.11 -2.39 -0.02 2.61 16 34 H 0.10 2.33 8.05 -2.39 -0.02 2.31 16 35 H 0.06 2.19 7.97 -2.39 -0.02 2.17 16 36 H 0.02 0.95 6.40 -2.39 -0.02 0.93 16 37 H 0.13 6.50 6.21 -2.91 -0.02 6.48 16 Total: -1.00 -55.35 316.77 4.28 -51.08 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 1.11 Total: 23.26 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 3.87 Total: -14.87 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -3.99 Total: -82.06 kcal Atomic # 9 Polarization: -12.28 SS G_CDS: 1.34 Total: -10.94 kcal Atomic # 14 Polarization: 34.35 SS G_CDS: 2.03 Total: 36.38 kcal Atomic # 17 Polarization: -2.78 SS G_CDS: -0.08 Total: -2.86 kcal Total: -55.35 4.28 -51.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163980094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.655 kcal (2) G-P(sol) polarization free energy of solvation -55.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds