Wall clock time and date at job start Tue Mar 31 2020 11:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 F 1.39897 * 109.51901 * 2 1 4 4 C 1.53115 * 109.51899 * 239.81280 * 2 1 3 5 5 C 1.53039 * 109.27666 * 182.44409 * 4 2 1 6 6 N 1.46826 * 109.52036 * 59.17664 * 5 4 2 7 7 C 1.38403 * 110.98613 * 174.15915 * 6 5 4 8 8 N 1.32748 * 119.43586 * 62.49880 * 7 6 5 9 9 C 1.31472 * 121.73561 * 179.70443 * 8 7 6 10 10 C 1.40788 * 120.39037 * 0.57272 * 9 8 7 11 11 C 1.41196 * 120.56689 * 179.74657 * 10 9 8 12 12 H 1.08000 * 120.00708 * 151.80569 * 11 10 9 13 13 C 1.39870 * 119.99517 * 331.79895 * 11 10 9 14 14 N 1.30911 * 119.99605 * 161.36062 * 13 11 10 15 15 Si 1.86798 * 120.00162 * 341.36077 * 13 11 10 16 16 H 1.48507 * 109.46907 * 90.55145 * 15 13 11 17 17 H 1.48500 * 109.46918 * 210.54531 * 15 13 11 18 18 H 1.48491 * 109.47300 * 330.55040 * 15 13 11 19 19 C 1.41284 * 118.87105 * 359.71372 * 10 9 8 20 20 C 1.36665 * 118.39945 * 0.02562 * 19 10 9 21 21 Cl 1.73599 * 120.26278 * 180.02562 * 20 19 10 22 22 C 1.46847 * 111.20727 * 298.25549 * 6 5 4 23 23 C 1.53034 * 109.51844 * 61.74628 * 22 6 5 24 24 H 1.08994 * 109.50093 * 60.76674 * 23 22 6 25 25 F 1.39897 * 109.50469 * 180.88845 * 23 22 6 26 26 H 1.08997 * 109.46852 * 299.87373 * 1 2 3 27 27 H 1.09003 * 109.47066 * 59.86926 * 1 2 3 28 28 H 1.08998 * 109.47159 * 179.87204 * 1 2 3 29 29 H 1.09001 * 109.50759 * 302.38150 * 4 2 1 30 30 H 1.09003 * 109.50788 * 62.50085 * 4 2 1 31 31 H 1.09000 * 109.46087 * 179.19940 * 5 4 2 32 32 H 1.09000 * 109.46071 * 299.17061 * 5 4 2 33 33 H 1.08000 * 119.80353 * 180.26401 * 9 8 7 34 34 H 0.96996 * 119.99422 * 180.02562 * 14 13 11 35 35 H 1.08000 * 120.79961 * 179.97438 * 19 10 9 36 36 H 1.09008 * 109.45916 * 301.73145 * 22 6 5 37 37 H 1.08998 * 109.46308 * 181.75970 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9975 1.3186 0.0000 4 6 2.0417 -0.7257 -1.2474 5 6 3.5708 -0.7759 -1.2113 6 7 4.0101 -1.4789 0.0006 7 6 5.3826 -1.6569 0.0004 8 7 6.1782 -0.5943 0.0077 9 6 7.4877 -0.7109 0.0137 10 6 8.0895 -1.9836 0.0003 11 6 9.4955 -2.1131 0.0013 12 1 9.9570 -2.9884 0.4341 13 6 10.2907 -1.1078 -0.5585 14 7 11.5606 -1.0300 -0.2501 15 14 9.5407 0.1237 -1.7460 16 1 9.0418 1.3002 -0.9895 17 1 10.5717 0.5628 -2.7204 18 1 8.4125 -0.5126 -2.4721 19 6 7.2626 -3.1291 -0.0133 20 6 5.9074 -2.9525 -0.0135 21 17 4.8461 -4.3262 -0.0293 22 6 3.5708 -0.7746 1.2120 23 6 2.0417 -0.7244 1.2482 24 1 1.6447 -1.7393 1.2684 25 9 1.6239 -0.0358 2.3920 26 1 -0.3633 0.5119 0.8911 27 1 -0.3633 0.5159 -0.8888 28 1 -0.3633 -1.0276 -0.0023 29 1 1.6447 -1.7406 -1.2666 30 1 1.7161 -0.1901 -2.1393 31 1 3.9377 -1.3044 -2.0911 32 1 3.9675 0.2394 -1.2059 33 1 8.1055 0.1749 0.0238 34 1 12.1119 -0.3325 -0.6381 35 1 7.6911 -4.1204 -0.0241 36 1 3.9675 0.2407 1.2058 37 1 3.9378 -1.3025 2.0922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164337077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:53 Heat of formation + Delta-G solvation = -90.166497 kcal Electronic energy + Delta-G solvation = -24770.001913 eV Core-core repulsion = 20821.704388 eV Total energy + Delta-G solvation = -3948.297525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.085 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.35711 -48.21556 -41.22026 -38.98494 -37.31030 -36.04453 -34.81223 -33.08014 -31.86172 -31.57175 -29.33286 -26.52894 -24.60330 -24.38406 -23.80512 -22.48767 -20.94974 -19.80843 -18.68775 -17.99839 -17.44660 -17.10183 -16.97148 -16.78268 -16.40166 -16.17933 -15.90990 -15.29317 -15.12385 -14.74460 -14.67409 -14.56695 -14.06368 -13.96814 -13.60391 -13.36291 -13.29790 -13.05278 -13.02946 -12.91732 -12.87270 -12.59249 -12.57889 -12.18571 -12.00211 -11.81050 -11.48912 -11.30341 -11.21093 -10.48714 -10.35015 -9.62083 -9.54115 -9.12933 -6.72181 0.26148 0.50786 1.20493 1.28911 1.35132 1.37518 1.96759 2.34227 2.59690 3.03562 3.19803 3.31874 3.43720 3.59566 3.71755 3.83247 3.94900 4.23867 4.26644 4.31257 4.39185 4.44683 4.56411 4.57868 4.69717 4.70629 4.79844 4.82177 4.86977 5.03374 5.08129 5.17525 5.24913 5.41566 5.59488 5.86568 5.98151 6.14944 6.43549 6.50830 7.25476 7.92228 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.004543 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.082668 B = 6161.967880 C = 6943.748817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.086 3.914 3 F -0.222 7.222 4 C -0.121 4.121 5 C 0.054 3.946 6 N -0.446 5.446 7 C 0.141 3.859 8 N -0.470 5.470 9 C -0.043 4.043 10 C 0.044 3.956 11 C -0.442 4.442 12 H 0.080 0.920 13 C 0.060 3.940 14 N -0.810 5.810 15 Si 0.957 3.043 16 H -0.260 1.260 17 H -0.263 1.263 18 H -0.264 1.264 19 C -0.178 4.178 20 C 0.006 3.994 21 Cl -0.052 7.052 22 C 0.040 3.960 23 C 0.082 3.918 24 H 0.136 0.864 25 F -0.212 7.212 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.134 0.866 34 H 0.304 0.696 35 H 0.136 0.864 36 H 0.031 0.969 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.578 -0.983 -2.867 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.067 3.933 3 F -0.203 7.203 4 C -0.159 4.159 5 C -0.073 4.073 6 N -0.168 5.168 7 C -0.088 4.088 8 N -0.180 5.180 9 C -0.206 4.206 10 C 0.039 3.961 11 C -0.470 4.470 12 H 0.098 0.902 13 C -0.160 4.160 14 N -0.433 5.433 15 Si 0.781 3.219 16 H -0.186 1.186 17 H -0.189 1.189 18 H -0.188 1.188 19 C -0.205 4.205 20 C -0.024 4.024 21 Cl -0.023 7.023 22 C -0.088 4.088 23 C 0.046 3.954 24 H 0.153 0.847 25 F -0.193 7.193 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.151 0.849 34 H 0.115 0.885 35 H 0.154 0.846 36 H 0.049 0.951 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.973 -0.626 -2.834 18.206 hybrid contribution 1.416 0.663 -0.039 1.564 sum -16.557 0.037 -2.873 16.805 Atomic orbital electron populations 1.22338 0.89924 1.05741 1.04271 1.21885 0.97342 0.77700 0.96339 1.92838 1.90707 1.39101 1.97614 1.22190 0.93372 1.03601 0.96715 1.22153 0.96334 0.96509 0.92293 1.59608 1.06816 1.48264 1.02145 1.18777 0.89132 0.87315 1.13608 1.67201 1.06685 1.34323 1.09823 1.22489 0.89801 0.96614 1.11726 1.18636 0.94428 0.92049 0.90985 1.19471 0.89669 1.05412 1.32457 0.90174 1.26705 0.94838 0.97897 0.96594 1.69688 1.07866 1.30948 1.34840 0.85659 0.78713 0.78740 0.78803 1.18566 1.18881 1.18814 1.21217 0.90905 0.99354 1.08976 1.21102 0.90913 0.87974 1.02459 1.98283 1.65933 1.41419 1.96713 1.22469 0.94623 0.97700 0.94015 1.22231 0.94007 0.97731 0.81462 0.84655 1.92795 1.91102 1.82416 1.52973 0.91600 0.89620 0.87750 0.86320 0.87614 0.90274 0.95762 0.84873 0.88498 0.84591 0.95099 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 8.84 71.99 0.64 -1.86 16 2 C 0.09 1.92 1.04 -10.71 -0.01 1.91 16 3 F -0.22 -6.69 15.94 44.97 0.72 -5.98 16 4 C -0.12 -2.43 5.16 30.65 0.16 -2.28 16 5 C 0.05 1.62 5.14 86.33 0.44 2.06 16 6 N -0.45 -14.83 3.99 -701.66 -2.80 -17.63 16 7 C 0.14 5.75 5.28 133.32 0.70 6.45 16 8 N -0.47 -21.53 9.66 -191.09 -1.85 -23.38 16 9 C -0.04 -2.07 8.50 85.37 0.73 -1.34 16 10 C 0.04 2.12 5.15 -21.18 -0.11 2.01 16 11 C -0.44 -22.30 9.59 23.39 0.22 -22.08 16 12 H 0.08 4.23 8.06 -2.91 -0.02 4.21 16 13 C 0.06 2.91 5.41 85.23 0.46 3.37 16 14 N -0.81 -39.75 13.93 21.82 0.30 -39.45 16 15 Si 0.96 40.08 24.55 68.60 1.68 41.76 16 16 H -0.26 -10.75 6.45 99.48 0.64 -10.11 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 18 H -0.26 -11.66 7.04 99.48 0.70 -10.96 16 19 C -0.18 -7.68 9.66 22.65 0.22 -7.46 16 20 C 0.01 0.23 6.32 22.28 0.14 0.37 16 21 Cl -0.05 -1.67 28.43 -2.72 -0.08 -1.74 16 22 C 0.04 1.31 4.87 86.32 0.42 1.73 16 23 C 0.08 2.05 3.22 30.65 0.10 2.15 16 24 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 25 F -0.21 -5.98 16.63 44.97 0.75 -5.24 16 26 H 0.06 1.10 7.87 -2.39 -0.02 1.08 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 32 H 0.02 0.85 7.75 -2.39 -0.02 0.84 16 33 H 0.13 6.37 4.41 -2.91 -0.01 6.35 16 34 H 0.30 13.26 8.30 -92.71 -0.77 12.49 16 35 H 0.14 5.43 8.06 -2.91 -0.02 5.41 16 36 H 0.03 1.18 7.74 -2.38 -0.02 1.17 16 37 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 Total: -1.00 -56.22 321.01 3.87 -52.35 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.03 Total: 14.25 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 4.11 Total: -14.95 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -4.34 Total: -80.45 kcal Atomic # 9 Polarization: -12.68 SS G_CDS: 1.46 Total: -11.21 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.68 Total: 41.76 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.74 kcal Total: -56.22 3.87 -52.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164337077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.820 kcal (2) G-P(sol) polarization free energy of solvation -56.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds