Wall clock time and date at job start Tue Mar 31 2020 11:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34781 * 116.99480 * 2 1 4 4 O 1.21534 * 120.00440 * 0.02562 * 3 2 1 5 5 C 1.47225 * 119.99371 * 179.97438 * 3 2 1 6 6 C 1.40142 * 120.58995 * 5.68922 * 5 3 2 7 7 C 1.38361 * 118.35592 * 180.02562 * 6 5 3 8 8 F 1.35100 * 120.26923 * 179.97438 * 7 6 5 9 9 C 1.38786 * 119.45682 * 0.02562 * 7 6 5 10 10 Cl 1.73599 * 119.41357 * 179.97438 * 9 7 6 11 11 N 1.31965 * 121.17006 * 359.73126 * 9 7 6 12 12 C 1.32391 * 121.78940 * 0.53751 * 11 9 7 13 13 N 1.38335 * 119.79956 * 179.74800 * 12 11 9 14 14 C 1.46509 * 120.00035 * 354.25786 * 13 12 11 15 15 C 1.52995 * 109.47144 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47165 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47582 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99448 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00361 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99938 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00140 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47010 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47239 * 119.99712 * 21 19 17 24 24 H 1.48496 * 109.47335 * 239.99913 * 21 19 17 25 25 H 1.08997 * 109.47447 * 59.99964 * 1 2 3 26 26 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47585 * 299.99864 * 1 2 3 28 28 H 1.08002 * 120.82387 * 359.97438 * 6 5 3 29 29 H 0.96996 * 120.00250 * 174.25973 * 13 12 11 30 30 H 1.09004 * 109.46532 * 59.99761 * 14 13 12 31 31 H 1.08996 * 109.46753 * 300.00106 * 14 13 12 32 32 H 1.09000 * 109.47149 * 300.00112 * 15 14 13 33 33 H 1.08993 * 109.47399 * 60.00038 * 15 14 13 34 34 H 1.09000 * 109.46970 * 299.99966 * 16 15 14 35 35 H 1.09006 * 109.47416 * 59.99732 * 16 15 14 36 36 H 0.97002 * 120.00297 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2010 0.0000 4 8 1.4018 2.2202 0.0005 5 6 3.5340 1.2780 0.0006 6 6 4.3091 0.1165 -0.1185 7 6 5.6869 0.2423 -0.1121 8 9 6.4712 -0.8520 -0.2239 9 6 6.2566 1.5019 0.0113 10 17 7.9855 1.6584 0.0199 11 7 5.5074 2.5830 0.1174 12 6 4.1851 2.5175 0.1219 13 7 3.4398 3.6768 0.2405 14 6 4.1096 4.9564 0.4868 15 6 3.0645 6.0702 0.5760 16 6 3.7640 7.4065 0.8326 17 6 2.7347 8.5036 0.9211 18 1 1.6864 8.2710 0.8055 19 6 3.1313 9.8043 1.1487 20 7 4.4078 10.0875 1.2890 21 14 1.8553 11.1643 1.2577 22 1 0.5001 10.5880 1.0663 23 1 1.9346 11.8116 2.5918 24 1 2.1169 12.1743 0.2011 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.8424 -0.8530 -0.2121 29 1 2.4737 3.6427 0.1607 30 1 4.7988 5.1688 -0.3305 31 1 4.6631 4.9021 1.4242 32 1 2.5105 6.1246 -0.3611 33 1 2.3756 5.8575 1.3934 34 1 4.3183 7.3524 1.7696 35 1 4.4527 7.6191 0.0149 36 1 4.6869 11.0026 1.4495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:35 Heat of formation + Delta-G solvation = -118.417080 kcal Electronic energy + Delta-G solvation = -23214.982684 eV Core-core repulsion = 19253.087332 eV Total energy + Delta-G solvation = -3961.895352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.95547 -42.24543 -40.81432 -38.35141 -37.74902 -37.33914 -35.50910 -34.10628 -33.47571 -30.90447 -28.90917 -28.05830 -26.17713 -25.25107 -23.65121 -22.87461 -21.99532 -19.63769 -19.13570 -18.93606 -18.51359 -17.97491 -17.62804 -17.24780 -17.02701 -16.52403 -16.43631 -16.14288 -15.88789 -15.28402 -15.03327 -14.54299 -14.37538 -14.32520 -13.96135 -13.92186 -13.73305 -13.07741 -12.99755 -12.75978 -12.62367 -12.58472 -12.37994 -11.96406 -11.87797 -11.80428 -11.54432 -11.30010 -11.21320 -11.05028 -10.97935 -10.57222 -9.01674 -8.21184 -6.32363 -0.93352 -0.11178 0.35963 1.14411 1.40118 1.40267 1.48802 1.53652 1.95965 2.27322 2.40866 2.70627 3.11300 3.12412 3.32890 3.61160 3.88070 4.10137 4.16403 4.17466 4.32206 4.35137 4.38076 4.52455 4.76553 4.89616 4.91839 5.05151 5.10472 5.15455 5.47879 5.67689 5.72372 5.81922 5.91859 6.21965 6.45827 6.79119 6.84114 7.36950 8.90922 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.012473 B = 0.003229 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.392539 B = 8669.281699 C =10877.286814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.344 6.344 3 C 0.532 3.468 4 O -0.532 6.532 5 C -0.241 4.241 6 C 0.036 3.964 7 C -0.016 4.016 8 F -0.116 7.116 9 C 0.230 3.770 10 Cl 0.000 7.000 11 N -0.541 5.541 12 C 0.458 3.542 13 N -0.686 5.686 14 C 0.132 3.868 15 C -0.106 4.106 16 C 0.029 3.971 17 C -0.544 4.544 18 H 0.061 0.939 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.966 3.034 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.278 1.278 25 H 0.065 0.935 26 H 0.140 0.860 27 H 0.063 0.937 28 H 0.206 0.794 29 H 0.427 0.573 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.059 0.941 34 H -0.003 1.003 35 H -0.003 1.003 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 -27.454 -3.521 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.259 6.259 3 C 0.379 3.621 4 O -0.423 6.423 5 C -0.251 4.251 6 C 0.011 3.989 7 C -0.042 4.042 8 F -0.095 7.095 9 C 0.060 3.940 10 Cl 0.029 6.971 11 N -0.261 5.261 12 C 0.217 3.783 13 N -0.325 5.325 14 C 0.009 3.991 15 C -0.143 4.143 16 C -0.009 4.009 17 C -0.582 4.582 18 H 0.079 0.921 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.790 3.210 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.204 1.204 25 H 0.084 0.916 26 H 0.158 0.842 27 H 0.082 0.918 28 H 0.223 0.777 29 H 0.278 0.722 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.129 -26.024 -3.385 26.330 hybrid contribution -0.632 0.460 0.029 0.782 sum -2.761 -25.564 -3.356 25.931 Atomic orbital electron populations 1.23680 0.73589 1.06268 1.02915 1.86519 1.25611 1.30089 1.83637 1.20441 0.87711 0.82095 0.71803 1.90567 1.66555 1.36417 1.48792 1.19113 0.91042 0.92802 1.22181 1.21890 0.89720 1.00245 0.87083 1.17520 0.89226 0.82295 1.15189 1.91566 1.73398 1.50200 1.94295 1.21982 0.89062 0.88566 0.94393 1.98453 1.04783 1.98228 1.95655 1.66688 1.04727 1.31138 1.23581 1.18206 0.86440 0.86482 0.87173 1.45890 1.11218 1.04175 1.71186 1.21401 0.95402 0.81308 1.01027 1.21608 0.97439 0.93961 1.01342 1.18899 0.95226 0.91490 0.95288 1.21682 0.94063 0.93369 1.49043 0.92114 1.25972 0.97432 1.01624 0.94768 1.70101 1.16617 1.20284 1.50172 0.85388 0.79228 0.78542 0.77817 1.18615 1.20334 1.20363 0.91617 0.84236 0.91793 0.77691 0.72208 0.91878 0.92027 0.92254 0.92242 0.98469 0.98468 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 113.37 1.20 1.49 16 2 O -0.34 -5.34 9.90 -56.92 -0.56 -5.90 16 3 C 0.53 11.55 7.88 70.18 0.55 12.10 16 4 O -0.53 -14.37 13.46 19.73 0.27 -14.10 16 5 C -0.24 -5.32 5.91 -19.89 -0.12 -5.43 16 6 C 0.04 0.59 9.71 22.76 0.22 0.81 16 7 C -0.02 -0.31 7.29 22.43 0.16 -0.15 16 8 F -0.12 -2.12 16.83 44.97 0.76 -1.36 16 9 C 0.23 5.66 7.28 84.80 0.62 6.28 16 10 Cl 0.00 0.00 28.75 -2.72 -0.08 -0.08 16 11 N -0.54 -15.82 9.53 -183.14 -1.74 -17.57 16 12 C 0.46 12.97 7.48 133.64 1.00 13.97 16 13 N -0.69 -21.63 5.57 -344.41 -1.92 -23.55 16 14 C 0.13 4.79 5.69 86.38 0.49 5.28 16 15 C -0.11 -4.37 5.27 30.59 0.16 -4.21 16 16 C 0.03 1.52 4.97 29.85 0.15 1.67 16 17 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 19 C 0.00 0.00 5.46 84.65 0.46 0.46 16 20 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 21 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.21 1.75 7.71 -2.91 -0.02 1.73 16 29 H 0.43 13.39 4.97 -94.60 -0.47 12.92 16 30 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 36 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -67.35 336.77 4.82 -62.53 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.66 Total: 8.84 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.13 Total: 1.37 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -3.38 Total: -97.81 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.30 Total: -20.00 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.76 Total: -1.36 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -67.35 4.82 -62.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.887 kcal (2) G-P(sol) polarization free energy of solvation -67.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds