Wall clock time and date at job start Tue Mar 31 2020 10:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38326 * 119.97673 * 2 1 4 4 C 1.38240 * 120.16765 * 179.97438 * 3 2 1 5 5 N 1.48020 * 119.94385 * 180.02562 * 4 3 2 6 6 O 1.31696 * 119.99786 * 5.21882 * 5 4 3 7 7 O 1.31704 * 120.00149 * 185.22280 * 5 4 3 8 8 C 1.38182 * 120.11477 * 359.78927 * 4 3 2 9 9 C 1.38816 * 119.94672 * 0.46432 * 8 4 3 10 10 N 1.39869 * 120.07945 * 179.79251 * 9 8 4 11 11 C 1.38230 * 119.99872 * 353.70523 * 10 9 8 12 12 C 1.39489 * 119.99794 * 299.93750 * 11 10 9 13 13 H 1.08002 * 119.99538 * 158.01898 * 12 11 10 14 14 C 1.41825 * 120.00541 * 337.74481 * 12 11 10 15 15 N 1.29800 * 119.99451 * 351.39519 * 14 12 11 16 16 Si 1.86795 * 120.00383 * 171.39361 * 14 12 11 17 17 H 1.48505 * 109.46955 * 60.00077 * 16 14 12 18 18 H 1.48494 * 109.47234 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47269 * 300.00462 * 16 14 12 20 20 C 1.40728 * 119.99791 * 119.94514 * 11 10 9 21 21 C 1.43198 * 120.00536 * 354.51834 * 20 11 10 22 22 N 6.22320 * 128.56309 * 140.77078 * 2 1 3 23 23 C 1.43203 * 119.99669 * 174.51828 * 20 11 10 24 24 N 8.15437 * 156.92106 * 169.67380 * 2 1 3 25 25 C 1.38244 * 119.97539 * 179.97438 * 2 1 3 26 26 F 1.35096 * 120.05983 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.46959 * 270.01841 * 1 2 3 28 28 H 1.08999 * 109.47043 * 30.02215 * 1 2 3 29 29 H 1.09005 * 109.47178 * 150.02135 * 1 2 3 30 30 H 1.08002 * 119.91822 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.02670 * 180.23237 * 8 4 3 32 32 H 0.96997 * 119.99454 * 173.70710 * 10 9 8 33 33 H 0.97008 * 119.99655 * 185.01097 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1982 0.0000 4 6 3.5805 1.2028 0.0005 5 7 4.3151 2.4879 0.0011 6 8 3.6557 3.6232 0.1048 7 8 5.6280 2.4960 -0.1022 8 6 4.2778 0.0098 0.0055 9 6 3.5890 -1.1954 0.0001 10 7 4.2921 -2.4046 0.0007 11 6 5.6687 -2.4037 -0.1247 12 6 6.2651 -1.8569 -1.2609 13 1 7.2935 -1.5286 -1.2259 14 6 5.5230 -1.7372 -2.4636 15 7 4.3501 -2.2848 -2.5595 16 14 6.2336 -0.7918 -3.9094 17 1 7.5082 -1.4236 -4.3357 18 1 5.2688 -0.8146 -5.0380 19 1 6.4892 0.6138 -3.5043 20 6 6.4683 -2.9547 0.8939 21 6 5.8655 -3.4093 2.1106 22 7 5.3864 -3.7694 3.0774 23 6 7.8850 -3.0607 0.7135 24 7 9.0087 -3.1447 0.5730 25 6 2.1977 -1.1975 0.0005 26 9 1.5229 -2.3679 0.0005 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6564 2.1326 -0.0004 31 1 5.3578 0.0151 0.0097 32 1 3.8135 -3.2436 0.0891 33 1 3.8736 -2.2657 -3.4043 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169082578.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:20 Heat of formation + Delta-G solvation = 57.870753 kcal Electronic energy + Delta-G solvation = -25677.911460 eV Core-core repulsion = 21622.553029 eV Total energy + Delta-G solvation = -4055.358431 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -48.94024 -40.18449 -38.47646 -37.36354 -35.51406 -34.88336 -34.23763 -34.02277 -32.68032 -31.59024 -28.94120 -27.55547 -27.14051 -26.24159 -22.95177 -21.84559 -21.09976 -19.17333 -18.48313 -18.04452 -17.57195 -17.42470 -16.94451 -16.38186 -15.93716 -15.53124 -15.40201 -15.23822 -14.02701 -13.78080 -13.57276 -13.43405 -13.21060 -12.98643 -12.78179 -12.55654 -12.40642 -12.30713 -11.98499 -11.87074 -11.79381 -11.68836 -11.49198 -11.21491 -11.11326 -11.03903 -10.96317 -10.90949 -10.46011 -10.40524 -10.24188 -9.02658 -8.56187 -8.01059 -7.20144 -5.67984 -0.49892 1.04395 1.26170 1.33085 1.98892 2.59523 2.63459 2.74913 3.27124 3.34952 3.45614 3.69636 3.88929 3.97973 4.04446 4.17675 4.34536 4.75749 4.83642 4.89748 4.97122 5.20753 5.37323 5.40137 5.40407 5.70563 5.77615 5.89397 5.95897 5.98340 6.07687 6.13572 6.43302 6.80649 6.94850 7.00520 7.37605 7.47989 7.82649 8.07604 8.76740 8.95174 8.97752 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.006538 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.323232 B = 4281.828014 C = 4933.490208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.102 4.102 4 C 0.033 3.967 5 N -0.015 5.015 6 O -0.185 6.185 7 O -0.160 6.160 8 C -0.104 4.104 9 C 0.237 3.763 10 N -0.642 5.642 11 C 0.364 3.636 12 C -0.377 4.377 13 H 0.118 0.882 14 C 0.072 3.928 15 N -0.721 5.721 16 Si 0.916 3.084 17 H -0.248 1.248 18 H -0.267 1.267 19 H -0.243 1.243 20 C -0.298 4.298 21 C 0.305 3.695 22 N -0.526 5.526 23 C 0.322 3.678 24 N -0.521 5.521 25 C 0.077 3.923 26 F -0.124 7.124 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.174 0.826 32 H 0.413 0.587 33 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 4.780 -4.926 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.054 4.054 5 N 0.465 4.535 6 O -0.376 6.376 7 O -0.357 6.357 8 C -0.128 4.128 9 C 0.129 3.871 10 N -0.261 5.261 11 C 0.261 3.739 12 C -0.405 4.405 13 H 0.136 0.864 14 C -0.160 4.160 15 N -0.339 5.339 16 Si 0.737 3.263 17 H -0.172 1.172 18 H -0.191 1.191 19 H -0.166 1.166 20 C -0.316 4.316 21 C -0.003 4.003 22 N -0.208 5.208 23 C 0.014 3.986 24 N -0.203 5.203 25 C 0.052 3.948 26 F -0.102 7.102 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.171 0.829 31 H 0.191 0.809 32 H 0.251 0.749 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.340 3.458 -3.774 11.538 hybrid contribution -0.118 0.206 -1.103 1.128 sum -10.458 3.664 -4.877 12.107 Atomic orbital electron populations 1.20728 0.88773 1.03842 1.03331 1.19462 0.97278 0.89976 1.01433 1.20376 0.90518 0.99208 1.02315 1.19910 0.91249 0.81155 1.13095 1.50414 1.03201 1.04004 0.95852 1.96229 1.68491 1.17212 1.55705 1.96306 0.89028 1.96141 1.54201 1.20633 1.03310 0.87657 1.01190 1.17137 0.88491 0.87176 0.94332 1.41434 1.05277 1.04858 1.74493 1.16759 0.79350 0.88074 0.89702 1.20717 1.00241 1.27428 0.92071 0.86401 1.26647 0.93728 0.93624 1.02028 1.69217 1.10018 1.25431 1.29222 0.86077 0.80796 0.81607 0.77870 1.17161 1.19130 1.16640 1.12799 0.84800 1.38882 0.95109 1.25261 0.92603 0.90764 0.91630 1.81155 1.09547 1.17681 1.12371 1.24594 0.91197 0.90841 0.92003 1.81070 1.12199 1.16986 1.10042 1.17154 0.87863 0.81822 1.07993 1.91481 1.79626 1.45320 1.93781 0.90216 0.90457 0.90583 0.82891 0.80854 0.74916 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.83 36.00 0.35 -0.62 16 2 C -0.08 -0.97 5.88 -104.59 -0.62 -1.59 16 3 C -0.10 -1.33 9.23 -39.55 -0.37 -1.70 16 4 C 0.03 0.52 6.87 -79.97 -0.55 -0.03 16 5 N -0.01 -0.25 4.98 33.95 0.17 -0.08 16 6 O -0.19 -3.19 19.16 -31.56 -0.60 -3.79 16 7 O -0.16 -3.02 19.16 -31.57 -0.60 -3.62 16 8 C -0.10 -1.73 8.15 -39.39 -0.32 -2.05 16 9 C 0.24 3.84 5.25 -83.64 -0.44 3.40 16 10 N -0.64 -11.02 3.32 -8.13 -0.03 -11.05 16 11 C 0.36 6.84 4.97 -83.57 -0.42 6.42 16 12 C -0.38 -7.03 6.83 -37.75 -0.26 -7.29 16 13 H 0.12 2.25 7.17 -52.49 -0.38 1.87 16 14 C 0.07 1.25 4.87 -17.04 -0.08 1.17 16 15 N -0.72 -12.30 11.09 55.65 0.62 -11.68 16 16 Si 0.92 14.14 29.59 -169.99 -5.03 9.11 16 17 H -0.25 -3.92 7.11 56.52 0.40 -3.52 16 18 H -0.27 -4.00 7.11 56.52 0.40 -3.59 16 19 H -0.24 -3.94 7.11 56.52 0.40 -3.54 16 20 C -0.30 -6.04 5.87 -105.11 -0.62 -6.66 16 21 C 0.31 6.46 14.82 -22.43 -0.33 6.13 16 22 N -0.53 -11.71 18.55 41.90 0.78 -10.93 16 23 C 0.32 6.97 13.97 -22.48 -0.31 6.65 16 24 N -0.52 -11.86 18.53 41.82 0.78 -11.08 16 25 C 0.08 1.10 7.25 -39.25 -0.28 0.82 16 26 F -0.12 -1.77 15.86 2.25 0.04 -1.74 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.08 0.66 7.64 -51.93 -0.40 0.27 16 30 H 0.15 1.68 7.58 -52.49 -0.40 1.29 16 31 H 0.17 3.09 5.71 -52.49 -0.30 2.79 16 32 H 0.41 6.90 8.33 -40.82 -0.34 6.56 16 33 H 0.31 4.79 8.28 -40.82 -0.34 4.45 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -23.38 326.29 -5.00 -28.38 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -1.79 Total: 6.91 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -4.24 Total: 4.65 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 2.31 Total: -44.82 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -1.21 Total: -7.41 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 14.14 SS G_CDS: -5.03 Total: 9.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -23.38 -5.00 -28.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082578.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.250 kcal (2) G-P(sol) polarization free energy of solvation -23.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds