Wall clock time and date at job start Tue Mar 31 2020 10:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38326 * 119.97673 * 2 1 4 4 C 1.38240 * 120.16765 * 179.97438 * 3 2 1 5 5 N 1.48020 * 119.94385 * 180.02562 * 4 3 2 6 6 O 1.31696 * 119.99786 * 5.21882 * 5 4 3 7 7 O 1.31704 * 120.00149 * 185.22280 * 5 4 3 8 8 C 1.38182 * 120.11477 * 359.78927 * 4 3 2 9 9 C 1.38816 * 119.94672 * 0.46432 * 8 4 3 10 10 N 1.39869 * 120.07945 * 179.79251 * 9 8 4 11 11 C 1.38230 * 119.99872 * 353.70523 * 10 9 8 12 12 C 1.39489 * 119.99794 * 299.93750 * 11 10 9 13 13 H 1.08002 * 119.99538 * 158.01898 * 12 11 10 14 14 C 1.41825 * 120.00541 * 337.74481 * 12 11 10 15 15 N 1.29800 * 119.99451 * 351.39519 * 14 12 11 16 16 Si 1.86795 * 120.00383 * 171.39361 * 14 12 11 17 17 H 1.48505 * 109.46955 * 60.00077 * 16 14 12 18 18 H 1.48494 * 109.47234 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47269 * 300.00462 * 16 14 12 20 20 C 1.40728 * 119.99791 * 119.94514 * 11 10 9 21 21 C 1.43198 * 120.00536 * 354.51834 * 20 11 10 22 22 N 6.22320 * 128.56309 * 140.77078 * 2 1 3 23 23 C 1.43203 * 119.99669 * 174.51828 * 20 11 10 24 24 N 8.15437 * 156.92106 * 169.67380 * 2 1 3 25 25 C 1.38244 * 119.97539 * 179.97438 * 2 1 3 26 26 F 1.35096 * 120.05983 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.46959 * 270.01841 * 1 2 3 28 28 H 1.08999 * 109.47043 * 30.02215 * 1 2 3 29 29 H 1.09005 * 109.47178 * 150.02135 * 1 2 3 30 30 H 1.08002 * 119.91822 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.02670 * 180.23237 * 8 4 3 32 32 H 0.96997 * 119.99454 * 173.70710 * 10 9 8 33 33 H 0.97008 * 119.99655 * 185.01097 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1982 0.0000 4 6 3.5805 1.2028 0.0005 5 7 4.3151 2.4879 0.0011 6 8 3.6557 3.6232 0.1048 7 8 5.6280 2.4960 -0.1022 8 6 4.2778 0.0098 0.0055 9 6 3.5890 -1.1954 0.0001 10 7 4.2921 -2.4046 0.0007 11 6 5.6687 -2.4037 -0.1247 12 6 6.2651 -1.8569 -1.2609 13 1 7.2935 -1.5286 -1.2259 14 6 5.5230 -1.7372 -2.4636 15 7 4.3501 -2.2848 -2.5595 16 14 6.2336 -0.7918 -3.9094 17 1 7.5082 -1.4236 -4.3357 18 1 5.2688 -0.8146 -5.0380 19 1 6.4892 0.6138 -3.5043 20 6 6.4683 -2.9547 0.8939 21 6 5.8655 -3.4093 2.1106 22 7 5.3864 -3.7694 3.0774 23 6 7.8850 -3.0607 0.7135 24 7 9.0087 -3.1447 0.5730 25 6 2.1977 -1.1975 0.0005 26 9 1.5229 -2.3679 0.0005 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6564 2.1326 -0.0004 31 1 5.3578 0.0151 0.0097 32 1 3.8135 -3.2436 0.0891 33 1 3.8736 -2.2657 -3.4043 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082578.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:19 Heat of formation + Delta-G solvation = 48.440867 kcal Electronic energy + Delta-G solvation = -25678.320371 eV Core-core repulsion = 21622.553029 eV Total energy + Delta-G solvation = -4055.767342 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.10531 -41.42164 -39.84581 -38.70076 -37.12672 -36.59787 -35.59769 -35.39827 -33.79836 -32.99313 -30.27106 -28.97011 -28.20132 -27.52962 -24.24842 -23.11057 -22.40353 -20.68089 -19.74788 -19.43148 -18.90636 -18.75922 -18.24558 -17.72742 -17.19472 -16.78437 -16.73081 -16.49164 -15.36229 -15.01135 -14.62375 -14.56729 -14.46162 -14.35467 -14.25105 -13.98335 -13.66999 -13.56022 -13.47075 -13.29301 -13.17909 -13.02099 -12.87185 -12.75204 -12.62450 -12.38095 -12.25286 -12.19010 -11.86372 -11.76529 -11.59731 -10.11852 -10.01612 -9.38311 -8.54858 -7.24959 -1.83841 -0.10854 -0.00125 0.05066 0.59533 1.29551 1.39246 1.46245 1.95092 2.00839 2.10283 2.16918 2.18130 2.48447 2.55747 2.87229 3.28304 3.31263 3.57368 3.66486 3.75703 3.85148 4.13071 4.40186 4.49216 4.58441 4.58605 4.69892 4.78452 4.80739 5.01933 5.08214 5.26626 5.36713 5.54901 5.63888 5.88674 6.02569 6.45154 6.66322 7.09940 7.27109 7.59263 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.006538 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.323232 B = 4281.828014 C = 4933.490208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.065 4.065 3 C -0.081 4.081 4 C 0.020 3.980 5 N -0.012 5.012 6 O -0.152 6.152 7 O -0.225 6.225 8 C -0.120 4.120 9 C 0.221 3.779 10 N -0.645 5.645 11 C 0.366 3.634 12 C -0.374 4.374 13 H 0.108 0.892 14 C 0.055 3.945 15 N -0.715 5.715 16 Si 0.958 3.042 17 H -0.254 1.254 18 H -0.249 1.249 19 H -0.259 1.259 20 C -0.315 4.315 21 C 0.315 3.685 22 N -0.551 5.551 23 C 0.328 3.672 24 N -0.550 5.550 25 C 0.082 3.918 26 F -0.121 7.121 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.184 0.816 31 H 0.153 0.847 32 H 0.413 0.587 33 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 5.758 -6.132 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.068 4.068 3 C -0.102 4.102 4 C -0.067 4.067 5 N 0.465 4.535 6 O -0.355 6.355 7 O -0.406 6.406 8 C -0.144 4.144 9 C 0.114 3.886 10 N -0.266 5.266 11 C 0.263 3.737 12 C -0.401 4.401 13 H 0.126 0.874 14 C -0.178 4.178 15 N -0.333 5.333 16 Si 0.778 3.222 17 H -0.177 1.177 18 H -0.173 1.173 19 H -0.183 1.183 20 C -0.333 4.333 21 C 0.008 3.992 22 N -0.234 5.234 23 C 0.021 3.979 24 N -0.233 5.233 25 C 0.057 3.943 26 F -0.099 7.099 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.098 0.902 30 H 0.201 0.799 31 H 0.170 0.830 32 H 0.252 0.748 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.491 4.378 -4.993 15.037 hybrid contribution 0.595 0.010 -0.801 0.998 sum -12.896 4.388 -5.795 14.803 Atomic orbital electron populations 1.20903 0.85542 1.05388 1.04847 1.19885 0.99245 0.88525 0.99131 1.20798 0.89133 1.00770 0.99495 1.20117 0.92160 0.80054 1.14331 1.50625 1.03178 1.04459 0.95284 1.96185 1.68227 1.17909 1.53225 1.96332 0.89659 1.96317 1.58321 1.20451 1.02557 0.88498 1.02889 1.17238 0.89305 0.86466 0.95543 1.41286 1.04508 1.05332 1.75430 1.16655 0.80219 0.87721 0.89151 1.20837 1.00034 1.26536 0.92729 0.87427 1.26961 0.94043 0.94152 1.02619 1.69182 1.09779 1.24166 1.30165 0.85469 0.80502 0.79692 0.76574 1.17735 1.17250 1.18298 1.12854 0.84355 1.40560 0.95559 1.25333 0.92136 0.90245 0.91463 1.81139 1.10271 1.18998 1.12959 1.24823 0.91451 0.90266 0.91402 1.81049 1.12852 1.18499 1.10912 1.17362 0.87211 0.82716 1.06998 1.91495 1.79373 1.45448 1.93630 0.88523 0.87843 0.90207 0.79874 0.82976 0.74837 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.83 71.23 0.70 -0.68 16 2 C -0.07 -1.35 5.88 -19.84 -0.12 -1.47 16 3 C -0.08 -1.79 9.23 22.29 0.21 -1.59 16 4 C 0.02 0.61 6.87 36.36 0.25 0.86 16 5 N -0.01 -0.40 4.98 -46.49 -0.23 -0.63 16 6 O -0.15 -4.87 19.16 3.52 0.07 -4.80 16 7 O -0.23 -8.86 19.16 3.51 0.07 -8.79 16 8 C -0.12 -3.98 8.15 22.39 0.18 -3.80 16 9 C 0.22 6.97 5.25 38.21 0.20 7.18 16 10 N -0.65 -22.10 3.32 -179.62 -0.60 -22.69 16 11 C 0.37 14.02 4.97 39.04 0.19 14.21 16 12 C -0.37 -14.20 6.83 23.46 0.16 -14.04 16 13 H 0.11 4.27 7.17 -2.91 -0.02 4.25 16 14 C 0.06 1.87 4.87 85.88 0.42 2.29 16 15 N -0.71 -23.30 11.09 22.15 0.25 -23.06 16 16 Si 0.96 28.22 29.59 68.60 2.03 30.25 16 17 H -0.25 -7.69 7.11 99.48 0.71 -6.98 16 18 H -0.25 -6.64 7.11 99.48 0.71 -5.93 16 19 H -0.26 -8.28 7.11 99.48 0.71 -7.57 16 20 C -0.31 -13.13 5.87 -20.18 -0.12 -13.25 16 21 C 0.31 13.61 14.82 88.31 1.31 14.92 16 22 N -0.55 -24.87 18.55 19.02 0.35 -24.52 16 23 C 0.33 14.64 13.97 88.34 1.23 15.87 16 24 N -0.55 -25.78 18.53 19.00 0.35 -25.43 16 25 C 0.08 2.16 7.25 22.49 0.16 2.32 16 26 F -0.12 -3.16 15.86 44.97 0.71 -2.45 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.08 1.01 7.64 -2.38 -0.02 0.99 16 30 H 0.18 3.03 7.58 -2.91 -0.02 3.01 16 31 H 0.15 5.71 5.71 -2.91 -0.02 5.69 16 32 H 0.41 13.73 8.33 -92.71 -0.77 12.95 16 33 H 0.32 9.17 8.28 -92.70 -0.77 8.41 16 Total: -1.00 -50.95 326.29 8.25 -42.70 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.46 Total: 16.60 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: 4.78 Total: 22.83 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: 0.12 Total: -96.33 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.13 Total: -13.60 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.71 Total: -2.45 kcal Atomic # 14 Polarization: 28.22 SS G_CDS: 2.03 Total: 30.25 kcal Total: -50.95 8.25 -42.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082578.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.141 kcal (2) G-P(sol) polarization free energy of solvation -50.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds