Wall clock time and date at job start Tue Mar 31 2020 10:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38344 * 120.05356 * 2 1 4 4 F 1.35105 * 119.98384 * 0.02562 * 3 2 1 5 5 C 1.38498 * 120.02599 * 180.02562 * 3 2 1 6 6 C 1.38284 * 120.12684 * 359.97438 * 5 3 2 7 7 N 1.48009 * 119.94830 * 179.97438 * 6 5 3 8 8 O 1.31699 * 120.00572 * 355.76673 * 7 6 5 9 9 O 1.31708 * 119.99740 * 175.76828 * 7 6 5 10 10 C 1.38089 * 120.09751 * 0.02562 * 6 5 3 11 11 C 1.38865 * 120.04819 * 179.97438 * 2 1 3 12 12 N 1.39720 * 120.06160 * 0.02562 * 11 2 1 13 13 C 1.38265 * 120.00159 * 172.61793 * 12 11 2 14 14 C 1.39488 * 119.99553 * 299.98388 * 13 12 11 15 15 H 1.08000 * 119.99234 * 156.54319 * 14 13 12 16 16 C 1.41823 * 120.00077 * 336.53444 * 14 13 12 17 17 N 1.29798 * 120.00051 * 358.53130 * 16 14 13 18 18 Si 1.86798 * 119.99857 * 178.52606 * 16 14 13 19 19 H 1.48496 * 109.47172 * 60.00854 * 18 16 14 20 20 H 1.48502 * 109.47135 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47454 * 300.00162 * 18 16 14 22 22 C 1.40720 * 120.00514 * 119.98181 * 13 12 11 23 23 C 1.43199 * 120.00065 * 185.11459 * 22 13 12 24 24 N 7.04943 * 106.91700 * 174.38996 * 2 1 3 25 25 C 1.43202 * 119.99759 * 5.10925 * 22 13 12 26 26 N 5.21496 * 79.97403 * 145.81426 * 2 1 3 27 27 H 1.09005 * 109.46728 * 270.00588 * 1 2 3 28 28 H 1.09002 * 109.46594 * 29.99797 * 1 2 3 29 29 H 1.08995 * 109.47355 * 150.00118 * 1 2 3 30 30 H 1.07994 * 119.93937 * 180.27854 * 5 3 2 31 31 H 1.08001 * 120.01367 * 180.02562 * 10 6 5 32 32 H 0.96999 * 120.00403 * 352.61284 * 12 11 2 33 33 H 0.96998 * 120.00023 * 185.02027 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.1974 0.0000 4 9 1.5251 2.3679 0.0005 5 6 3.5848 1.1968 -0.0005 6 6 4.2783 0.0004 -0.0005 7 7 5.7584 0.0043 -0.0017 8 8 6.4139 1.1434 -0.0869 9 8 6.4199 -1.1315 0.0825 10 6 3.5920 -1.1978 -0.0005 11 6 2.2023 -1.2020 0.0005 12 7 1.5060 -2.4134 0.0005 13 6 2.1911 -3.6046 -0.1528 14 6 2.9405 -3.8345 -1.3065 15 1 3.7539 -4.5448 -1.2893 16 6 2.6344 -3.1356 -2.5020 17 7 1.6389 -2.3032 -2.5304 18 14 3.6639 -3.4130 -4.0358 19 1 3.5921 -4.8433 -4.4282 20 1 3.1427 -2.5693 -5.1411 21 1 5.0757 -3.0462 -3.7574 22 6 2.1323 -4.5849 0.8550 23 6 2.9275 -5.7709 0.7475 24 7 3.5583 -6.7121 0.6593 25 6 1.2773 -4.3964 1.9882 26 7 0.5991 -4.2480 2.8854 27 1 -0.3633 0.0001 1.0277 28 1 -0.3632 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 4.1242 2.1323 0.0040 31 1 4.1349 -2.1314 -0.0001 32 1 0.5420 -2.4187 0.1082 33 1 1.3839 -1.8803 -3.3653 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169082825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:24 Heat of formation + Delta-G solvation = 61.682985 kcal Electronic energy + Delta-G solvation = -25661.970094 eV Core-core repulsion = 21606.776974 eV Total energy + Delta-G solvation = -4055.193121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -49.06593 -40.32096 -38.61332 -37.12107 -35.46512 -34.93640 -34.21592 -34.06276 -32.96174 -31.05138 -29.02124 -28.38529 -27.34803 -25.07327 -23.27549 -21.53590 -21.40362 -19.48054 -18.69555 -18.06921 -17.49242 -17.09295 -16.42497 -16.13970 -16.00586 -15.64205 -15.53335 -15.19259 -15.10850 -14.08782 -13.53685 -13.24748 -13.06034 -12.81313 -12.72917 -12.50751 -12.31180 -12.02035 -11.96007 -11.82154 -11.75346 -11.73931 -11.65454 -11.26141 -11.13183 -11.10262 -10.98073 -10.93730 -10.47030 -10.40121 -10.26693 -8.98225 -8.57106 -8.01775 -7.25304 -5.68801 -0.50916 1.05135 1.27821 1.29548 1.96245 2.58337 2.61914 2.71942 3.25458 3.39075 3.45749 3.66351 3.87147 3.96462 4.04898 4.15279 4.60016 4.72004 4.80952 4.92767 4.97430 5.17708 5.38859 5.46599 5.58041 5.73521 5.82894 5.86363 5.96164 6.02031 6.10326 6.17480 6.49095 6.78813 6.93433 6.99054 7.34845 7.47121 7.80843 8.05392 8.72938 8.93097 8.95704 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.006399 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.563883 B = 4374.546516 C = 4959.059330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.139 4.139 3 C 0.141 3.859 4 F -0.126 7.126 5 C -0.164 4.164 6 C 0.058 3.942 7 N -0.016 5.016 8 O -0.182 6.182 9 O -0.155 6.155 10 C -0.119 4.119 11 C 0.292 3.708 12 N -0.639 5.639 13 C 0.364 3.636 14 C -0.378 4.378 15 H 0.116 0.884 16 C 0.072 3.928 17 N -0.726 5.726 18 Si 0.921 3.079 19 H -0.249 1.249 20 H -0.267 1.267 21 H -0.247 1.247 22 C -0.299 4.299 23 C 0.321 3.679 24 N -0.520 5.520 25 C 0.306 3.694 26 N -0.525 5.525 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.171 0.829 32 H 0.409 0.591 33 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 9.339 -4.806 10.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.146 4.146 3 C 0.120 3.880 4 F -0.105 7.105 5 C -0.186 4.186 6 C -0.029 4.029 7 N 0.465 4.535 8 O -0.374 6.374 9 O -0.353 6.353 10 C -0.142 4.142 11 C 0.183 3.817 12 N -0.258 5.258 13 C 0.261 3.739 14 C -0.405 4.405 15 H 0.134 0.866 16 C -0.160 4.160 17 N -0.345 5.345 18 Si 0.742 3.258 19 H -0.172 1.172 20 H -0.191 1.191 21 H -0.170 1.170 22 C -0.317 4.317 23 C 0.012 3.988 24 N -0.202 5.202 25 C -0.002 4.002 26 N -0.207 5.207 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.173 0.827 31 H 0.188 0.812 32 H 0.248 0.752 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.561 8.251 -3.685 9.712 hybrid contribution 0.282 0.529 -1.129 1.278 sum -3.278 8.780 -4.814 10.536 Atomic orbital electron populations 1.20658 0.89152 1.04136 1.02818 1.19581 0.97742 0.90249 1.07009 1.16522 0.88155 0.80905 1.02371 1.91511 1.79841 1.45303 1.93807 1.20392 0.92702 0.98247 1.07290 1.19439 0.76316 0.95451 1.11698 1.50388 1.04599 1.02573 0.95952 1.96238 1.70284 1.15230 1.55639 1.96307 1.69634 1.15281 1.54103 1.20811 0.93251 0.98357 1.01803 1.16553 0.89090 0.85467 0.90587 1.41508 1.09187 1.01359 1.73746 1.16811 0.86022 0.81776 0.89317 1.20696 1.12849 1.15593 0.91395 0.86576 1.26622 0.95070 0.91602 1.02685 1.69206 1.19097 1.14747 1.31405 0.86001 0.81086 0.81117 0.77606 1.17228 1.19139 1.17039 1.12803 1.19814 0.98625 1.00414 1.24634 0.91170 0.91073 0.91900 1.81113 1.15449 1.12940 1.10683 1.25120 0.91405 0.92228 0.91422 1.81033 1.16397 1.10479 1.12775 0.90609 0.90724 0.90001 0.82684 0.81188 0.75201 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.34 36.00 0.34 -0.90 16 2 C -0.14 -1.88 5.90 -104.35 -0.62 -2.50 16 3 C 0.14 1.89 7.24 -39.45 -0.29 1.61 16 4 F -0.13 -1.60 16.48 2.25 0.04 -1.56 16 5 C -0.16 -2.31 9.56 -39.47 -0.38 -2.68 16 6 C 0.06 0.93 6.87 -79.99 -0.55 0.38 16 7 N -0.02 -0.28 4.98 33.94 0.17 -0.11 16 8 O -0.18 -3.22 19.15 -31.57 -0.60 -3.82 16 9 O -0.16 -2.95 19.15 -31.57 -0.60 -3.55 16 10 C -0.12 -1.95 8.22 -39.37 -0.32 -2.27 16 11 C 0.29 4.46 5.02 -83.76 -0.42 4.04 16 12 N -0.64 -10.11 3.19 -8.19 -0.03 -10.13 16 13 C 0.36 6.51 4.97 -83.56 -0.41 6.10 16 14 C -0.38 -6.80 6.92 -37.75 -0.26 -7.06 16 15 H 0.12 2.17 7.06 -52.49 -0.37 1.80 16 16 C 0.07 1.19 5.08 -17.04 -0.09 1.11 16 17 N -0.73 -11.60 10.77 55.65 0.60 -11.00 16 18 Si 0.92 13.82 29.58 -169.99 -5.03 8.80 16 19 H -0.25 -3.84 7.11 56.52 0.40 -3.43 16 20 H -0.27 -3.90 7.11 56.52 0.40 -3.50 16 21 H -0.25 -3.93 7.11 56.52 0.40 -3.53 16 22 C -0.30 -5.82 5.87 -105.11 -0.62 -6.44 16 23 C 0.32 6.77 13.92 -22.46 -0.31 6.46 16 24 N -0.52 -11.62 18.54 41.85 0.78 -10.84 16 25 C 0.31 6.19 14.79 -22.52 -0.33 5.86 16 26 N -0.53 -11.17 18.53 41.78 0.77 -10.39 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.75 7.64 -51.93 -0.40 0.36 16 29 H 0.08 0.91 6.66 -51.93 -0.35 0.56 16 30 H 0.16 1.97 7.58 -52.49 -0.40 1.57 16 31 H 0.17 3.00 5.76 -52.49 -0.30 2.69 16 32 H 0.41 6.02 6.91 -40.82 -0.28 5.74 16 33 H 0.31 4.51 8.28 -40.82 -0.34 4.17 16 LS Contribution 323.42 15.07 4.87 4.87 Total: -1.00 -22.32 323.42 -4.95 -27.26 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -1.65 Total: 6.79 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -4.26 Total: 3.69 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 2.29 Total: -42.47 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -1.21 Total: -7.38 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 13.82 SS G_CDS: -5.03 Total: 8.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -22.32 -4.95 -27.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.946 kcal (2) G-P(sol) polarization free energy of solvation -22.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds