Wall clock time and date at job start Tue Mar 31 2020 10:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38344 * 120.05356 * 2 1 4 4 F 1.35105 * 119.98384 * 0.02562 * 3 2 1 5 5 C 1.38498 * 120.02599 * 180.02562 * 3 2 1 6 6 C 1.38284 * 120.12684 * 359.97438 * 5 3 2 7 7 N 1.48009 * 119.94830 * 179.97438 * 6 5 3 8 8 O 1.31699 * 120.00572 * 355.76673 * 7 6 5 9 9 O 1.31708 * 119.99740 * 175.76828 * 7 6 5 10 10 C 1.38089 * 120.09751 * 0.02562 * 6 5 3 11 11 C 1.38865 * 120.04819 * 179.97438 * 2 1 3 12 12 N 1.39720 * 120.06160 * 0.02562 * 11 2 1 13 13 C 1.38265 * 120.00159 * 172.61793 * 12 11 2 14 14 C 1.39488 * 119.99553 * 299.98388 * 13 12 11 15 15 H 1.08000 * 119.99234 * 156.54319 * 14 13 12 16 16 C 1.41823 * 120.00077 * 336.53444 * 14 13 12 17 17 N 1.29798 * 120.00051 * 358.53130 * 16 14 13 18 18 Si 1.86798 * 119.99857 * 178.52606 * 16 14 13 19 19 H 1.48496 * 109.47172 * 60.00854 * 18 16 14 20 20 H 1.48502 * 109.47135 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47454 * 300.00162 * 18 16 14 22 22 C 1.40720 * 120.00514 * 119.98181 * 13 12 11 23 23 C 1.43199 * 120.00065 * 185.11459 * 22 13 12 24 24 N 7.04943 * 106.91700 * 174.38996 * 2 1 3 25 25 C 1.43202 * 119.99759 * 5.10925 * 22 13 12 26 26 N 5.21496 * 79.97403 * 145.81426 * 2 1 3 27 27 H 1.09005 * 109.46728 * 270.00588 * 1 2 3 28 28 H 1.09002 * 109.46594 * 29.99797 * 1 2 3 29 29 H 1.08995 * 109.47355 * 150.00118 * 1 2 3 30 30 H 1.07994 * 119.93937 * 180.27854 * 5 3 2 31 31 H 1.08001 * 120.01367 * 180.02562 * 10 6 5 32 32 H 0.96999 * 120.00403 * 352.61284 * 12 11 2 33 33 H 0.96998 * 120.00023 * 185.02027 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.1974 0.0000 4 9 1.5251 2.3679 0.0005 5 6 3.5848 1.1968 -0.0005 6 6 4.2783 0.0004 -0.0005 7 7 5.7584 0.0043 -0.0017 8 8 6.4139 1.1434 -0.0869 9 8 6.4199 -1.1315 0.0825 10 6 3.5920 -1.1978 -0.0005 11 6 2.2023 -1.2020 0.0005 12 7 1.5060 -2.4134 0.0005 13 6 2.1911 -3.6046 -0.1528 14 6 2.9405 -3.8345 -1.3065 15 1 3.7539 -4.5448 -1.2893 16 6 2.6344 -3.1356 -2.5020 17 7 1.6389 -2.3032 -2.5304 18 14 3.6639 -3.4130 -4.0358 19 1 3.5921 -4.8433 -4.4282 20 1 3.1427 -2.5693 -5.1411 21 1 5.0757 -3.0462 -3.7574 22 6 2.1323 -4.5849 0.8550 23 6 2.9275 -5.7709 0.7475 24 7 3.5583 -6.7121 0.6593 25 6 1.2773 -4.3964 1.9882 26 7 0.5991 -4.2480 2.8854 27 1 -0.3633 0.0001 1.0277 28 1 -0.3632 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 4.1242 2.1323 0.0040 31 1 4.1349 -2.1314 -0.0001 32 1 0.5420 -2.4187 0.1082 33 1 1.3839 -1.8803 -3.3653 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:24 Heat of formation + Delta-G solvation = 53.660008 kcal Electronic energy + Delta-G solvation = -25662.317997 eV Core-core repulsion = 21606.776974 eV Total energy + Delta-G solvation = -4055.541023 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.12466 -41.56246 -39.96906 -38.50011 -37.00385 -36.58844 -35.59980 -35.38015 -34.17709 -32.38785 -30.24927 -29.62177 -28.81355 -26.26889 -24.54690 -22.74596 -22.72811 -20.90945 -20.00277 -19.45902 -18.90832 -18.40582 -17.73271 -17.34636 -17.24007 -16.79192 -16.73026 -16.42029 -16.35769 -15.35853 -14.69536 -14.59793 -14.38253 -14.35728 -13.95773 -13.85575 -13.48231 -13.44047 -13.39407 -13.35946 -13.10040 -12.96933 -12.80883 -12.73625 -12.70373 -12.49442 -12.30661 -12.18935 -11.90296 -11.73814 -11.58133 -10.11753 -9.96732 -9.33824 -8.54111 -7.19276 -1.87406 -0.14175 -0.02095 0.02944 0.61468 1.33092 1.41297 1.47389 1.99170 2.03616 2.13747 2.21934 2.22178 2.53500 2.58768 2.89598 3.35699 3.49114 3.57410 3.60135 3.74320 3.82188 4.01571 4.39536 4.52068 4.55360 4.62521 4.66331 4.71657 4.73476 5.01486 5.07401 5.29166 5.38038 5.57983 5.59725 5.92080 6.07927 6.50610 6.73672 7.13921 7.31003 7.63207 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.006399 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.563883 B = 4374.546516 C = 4959.059330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C 0.146 3.854 4 F -0.115 7.115 5 C -0.147 4.147 6 C 0.045 3.955 7 N -0.012 5.012 8 O -0.163 6.163 9 O -0.209 6.209 10 C -0.131 4.131 11 C 0.280 3.720 12 N -0.637 5.637 13 C 0.367 3.633 14 C -0.376 4.376 15 H 0.103 0.897 16 C 0.055 3.945 17 N -0.714 5.714 18 Si 0.961 3.039 19 H -0.255 1.255 20 H -0.251 1.251 21 H -0.265 1.265 22 C -0.314 4.314 23 C 0.326 3.674 24 N -0.553 5.553 25 C 0.316 3.684 26 N -0.547 5.547 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.174 0.826 31 H 0.151 0.849 32 H 0.415 0.585 33 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 11.740 -5.967 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 C 0.125 3.875 4 F -0.094 7.094 5 C -0.169 4.169 6 C -0.042 4.042 7 N 0.464 4.536 8 O -0.363 6.363 9 O -0.394 6.394 10 C -0.155 4.155 11 C 0.173 3.827 12 N -0.258 5.258 13 C 0.263 3.737 14 C -0.403 4.403 15 H 0.121 0.879 16 C -0.177 4.177 17 N -0.332 5.332 18 Si 0.781 3.219 19 H -0.179 1.179 20 H -0.174 1.174 21 H -0.189 1.189 22 C -0.333 4.333 23 C 0.019 3.981 24 N -0.236 5.236 25 C 0.009 3.991 26 N -0.230 5.230 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.191 0.809 31 H 0.169 0.831 32 H 0.255 0.745 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.063 10.570 -4.835 12.678 hybrid contribution 0.679 0.050 -0.866 1.102 sum -4.384 10.620 -5.701 12.826 Atomic orbital electron populations 1.20786 0.87058 1.05091 1.03952 1.19868 0.99162 0.89459 1.04098 1.16418 0.87810 0.81182 1.02059 1.91551 1.79514 1.44647 1.93653 1.20618 0.93115 0.98093 1.05064 1.19525 0.75297 0.96135 1.13256 1.50595 1.05355 1.02258 0.95354 1.96203 1.70823 1.15202 1.54051 1.96324 1.70164 1.15494 1.57454 1.20702 0.93827 0.97930 1.03003 1.16588 0.88655 0.85880 0.91603 1.41352 1.09317 1.00797 1.74286 1.16672 0.86183 0.82182 0.88680 1.20787 1.12199 1.15182 0.92144 0.87858 1.26867 0.95799 0.91832 1.03205 1.69150 1.18170 1.13417 1.32439 0.85431 0.79310 0.80800 0.76384 1.17916 1.17395 1.18912 1.12845 1.20485 0.98873 1.01106 1.24918 0.90857 0.91094 0.91219 1.81093 1.16783 1.13978 1.11729 1.25144 0.91065 0.91693 0.91183 1.81025 1.17393 1.11251 1.13324 0.89238 0.89028 0.89771 0.80874 0.83097 0.74467 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.34 71.24 0.67 -1.41 16 2 C -0.12 -2.87 5.90 -19.69 -0.12 -2.98 16 3 C 0.15 3.41 7.24 22.36 0.16 3.57 16 4 F -0.12 -2.44 16.48 44.97 0.74 -1.69 16 5 C -0.15 -3.71 9.56 22.34 0.21 -3.50 16 6 C 0.04 1.39 6.87 36.35 0.25 1.64 16 7 N -0.01 -0.43 4.98 -46.53 -0.23 -0.66 16 8 O -0.16 -5.52 19.15 3.52 0.07 -5.46 16 9 O -0.21 -8.24 19.15 3.50 0.07 -8.17 16 10 C -0.13 -4.23 8.22 22.41 0.18 -4.05 16 11 C 0.28 8.11 5.02 38.21 0.19 8.30 16 12 N -0.64 -19.36 3.19 -179.81 -0.57 -19.94 16 13 C 0.37 13.08 4.97 39.04 0.19 13.27 16 14 C -0.38 -13.53 6.92 23.46 0.16 -13.36 16 15 H 0.10 3.97 7.06 -2.91 -0.02 3.95 16 16 C 0.06 1.77 5.08 85.88 0.44 2.21 16 17 N -0.71 -21.10 10.77 22.15 0.24 -20.86 16 18 Si 0.96 27.24 29.58 68.60 2.03 29.27 16 19 H -0.26 -7.51 7.11 99.48 0.71 -6.80 16 20 H -0.25 -6.46 7.11 99.48 0.71 -5.75 16 21 H -0.26 -8.27 7.11 99.48 0.71 -7.56 16 22 C -0.31 -12.40 5.87 -20.18 -0.12 -12.52 16 23 C 0.33 14.09 13.92 88.33 1.23 15.32 16 24 N -0.55 -25.36 18.54 19.01 0.35 -25.00 16 25 C 0.32 12.80 14.79 88.35 1.31 14.10 16 26 N -0.55 -23.15 18.53 18.99 0.35 -22.79 16 27 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.09 1.43 7.64 -2.39 -0.02 1.42 16 29 H 0.08 1.57 6.66 -2.39 -0.02 1.56 16 30 H 0.17 3.77 7.58 -2.91 -0.02 3.75 16 31 H 0.15 5.50 5.76 -2.91 -0.02 5.48 16 32 H 0.41 11.49 6.91 -92.71 -0.64 10.84 16 33 H 0.32 8.33 8.28 -92.71 -0.77 7.56 16 Total: -1.00 -47.21 323.42 8.40 -38.81 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.60 Total: 15.92 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 4.76 Total: 20.59 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: 0.14 Total: -89.26 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.13 Total: -13.63 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.74 Total: -1.69 kcal Atomic # 14 Polarization: 27.24 SS G_CDS: 2.03 Total: 29.27 kcal Total: -47.21 8.40 -38.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.465 kcal (2) G-P(sol) polarization free energy of solvation -47.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds