Wall clock time and date at job start Tue Mar 31 2020 11:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76197 * 103.00061 * 2 1 4 4 N 1.31042 * 126.37559 * 4.66116 * 3 2 1 5 5 N 1.39736 * 109.46816 * 180.02562 * 4 3 2 6 6 C 1.40047 * 125.21907 * 180.02562 * 5 4 3 7 7 C 1.38746 * 120.10892 * 131.36279 * 6 5 4 8 8 C 1.38166 * 119.99841 * 179.97438 * 7 6 5 9 9 C 1.38363 * 120.20705 * 359.97438 * 8 7 6 10 10 C 1.38137 * 120.20863 * 0.02562 * 9 8 7 11 11 C 1.38758 * 120.00130 * 0.02562 * 10 9 8 12 12 O 1.35760 * 120.10438 * 180.02562 * 11 10 9 13 13 C 1.34811 * 116.99874 * 354.57098 * 12 11 10 14 14 H 1.07998 * 119.99725 * 4.95814 * 13 12 11 15 15 C 1.38624 * 119.99873 * 184.96300 * 13 12 11 16 16 N 1.31577 * 120.00169 * 185.77266 * 15 13 12 17 17 Si 1.86798 * 120.00412 * 5.76911 * 15 13 12 18 18 H 1.48504 * 109.47006 * 85.63735 * 17 15 13 19 19 H 1.48498 * 109.47597 * 205.64382 * 17 15 13 20 20 H 1.48506 * 109.47057 * 325.64415 * 17 15 13 21 21 C 1.35016 * 109.56384 * 0.26179 * 5 4 3 22 22 N 1.38163 * 126.26734 * 179.69594 * 21 5 4 23 23 C 1.39321 * 107.47184 * 359.58364 * 21 5 4 24 24 C 1.43207 * 126.88535 * 180.15506 * 23 21 5 25 25 N 4.10028 * 164.90072 * 343.88277 * 2 1 3 26 26 H 1.09005 * 109.47060 * 305.21464 * 1 2 3 27 27 H 1.09004 * 109.47162 * 65.20597 * 1 2 3 28 28 H 1.08996 * 109.47502 * 185.20558 * 1 2 3 29 29 H 1.08007 * 119.99781 * 359.97438 * 7 6 5 30 30 H 1.08001 * 119.89113 * 179.97438 * 8 7 6 31 31 H 1.08005 * 119.89213 * 180.28299 * 9 8 7 32 32 H 1.08006 * 119.99897 * 179.97438 * 10 9 8 33 33 H 0.96995 * 120.00358 * 179.97438 * 16 15 13 34 34 H 0.97003 * 119.99567 * 4.32739 * 22 21 5 35 35 H 0.96995 * 120.00405 * 184.32517 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 7 1.3605 2.7106 0.0857 5 7 2.0559 3.9222 0.0521 6 6 1.4697 5.1921 0.1223 7 6 1.9678 6.1409 1.0036 8 6 1.3880 7.3933 1.0706 9 6 0.3108 7.7059 0.2605 10 6 -0.1920 6.7678 -0.6200 11 6 0.3829 5.5071 -0.6937 12 8 -0.1093 4.5837 -1.5586 13 6 -1.2265 4.9145 -2.2366 14 1 -1.6431 5.9062 -2.1398 15 6 -1.8407 3.9818 -3.0578 16 7 -2.8631 4.3362 -3.8064 17 14 -1.2168 2.2216 -3.1020 18 1 -1.8507 1.4441 -2.0070 19 1 -1.5610 1.6069 -4.4092 20 1 0.2577 2.2145 -2.9246 21 6 3.3793 3.6809 -0.0636 22 7 4.3802 4.6307 -0.1341 23 6 3.5511 2.2987 -0.0965 24 6 4.7900 1.5890 -0.2081 25 7 5.7727 1.0261 -0.2965 26 1 -0.3633 0.5926 0.8396 27 1 -0.3634 0.4310 -0.9330 28 1 -0.3634 -1.0234 0.0932 29 1 2.8088 5.9005 1.6372 30 1 1.7769 8.1304 1.7575 31 1 -0.1356 8.6880 0.3138 32 1 -1.0333 7.0154 -1.2505 33 1 -3.2926 3.6837 -4.3813 34 1 4.1637 5.5714 -0.0379 35 1 5.2992 4.3570 -0.2797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212598229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:55 Heat of formation + Delta-G solvation = 113.874347 kcal Electronic energy + Delta-G solvation = -23605.041144 eV Core-core repulsion = 20118.324387 eV Total energy + Delta-G solvation = -3486.716757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22760 -39.27499 -36.93581 -36.10387 -34.90666 -33.02281 -32.55010 -29.75576 -29.29678 -28.67759 -28.31601 -25.54141 -23.43658 -22.75885 -21.58383 -20.67408 -18.92605 -18.18389 -17.61395 -17.30405 -16.15838 -16.10103 -15.64998 -15.15734 -14.84954 -14.38023 -14.16603 -14.00296 -13.87731 -13.65755 -13.46142 -12.93561 -12.84588 -12.62502 -12.59528 -12.32029 -12.19136 -11.80068 -11.49027 -11.40412 -11.16417 -10.92805 -10.68163 -10.38334 -10.34378 -9.87416 -9.66492 -9.06246 -8.49633 -7.86788 -7.77107 -7.31376 -6.63853 -4.29341 1.28018 1.48680 1.84362 1.98077 2.12488 2.29407 2.68405 2.92919 3.11407 3.13980 3.32850 3.69114 3.78576 4.03529 4.09741 4.43462 4.51132 4.86096 5.01884 5.19904 5.26033 5.32484 5.35532 5.41004 5.58770 5.74503 5.92240 5.96640 6.07405 6.15821 6.53312 6.60880 6.76171 6.91289 7.13920 7.17716 7.40681 7.60111 7.76758 7.83854 7.91796 8.69975 9.27434 10.41585 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.009845 B = 0.007370 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.362064 B = 3798.514206 C = 5930.575856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.024 6.024 3 C 0.119 3.881 4 N -0.254 5.254 5 N -0.304 5.304 6 C 0.043 3.957 7 C -0.080 4.080 8 C -0.194 4.194 9 C -0.062 4.062 10 C -0.209 4.209 11 C 0.173 3.827 12 O -0.182 6.182 13 C -0.393 4.393 14 H 0.110 0.890 15 C 0.072 3.928 16 N -0.865 5.865 17 Si 0.895 3.105 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.252 1.252 21 C 0.440 3.560 22 N -0.835 5.835 23 C -0.254 4.254 24 C 0.310 3.690 25 N -0.458 5.458 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.143 0.857 33 H 0.283 0.717 34 H 0.410 0.590 35 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 1.159 8.344 11.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.205 5.795 3 C -0.164 4.164 4 N -0.074 5.074 5 N -0.084 5.084 6 C -0.049 4.049 7 C -0.101 4.101 8 C -0.214 4.214 9 C -0.081 4.081 10 C -0.229 4.229 11 C 0.116 3.884 12 O -0.083 6.083 13 C -0.468 4.468 14 H 0.127 0.873 15 C -0.134 4.134 16 N -0.501 5.501 17 Si 0.720 3.280 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.176 1.176 21 C 0.205 3.795 22 N -0.384 5.384 23 C -0.278 4.278 24 C -0.003 4.003 25 N -0.137 5.137 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.161 0.839 33 H 0.093 0.907 34 H 0.242 0.758 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 8.520 -0.580 8.043 11.731 hybrid contribution -0.301 0.890 -0.260 0.975 sum 8.218 0.311 7.784 11.324 Atomic orbital electron populations 1.23762 0.94041 1.06694 1.07542 1.85263 1.06966 0.94696 1.92588 1.24931 0.91924 0.98514 1.01078 1.77800 1.16776 0.86903 1.25944 1.44699 1.01003 1.04609 1.58112 1.16510 1.01816 0.82309 1.04259 1.20571 1.00321 0.93358 0.95824 1.20493 1.00175 0.96449 1.04253 1.20972 0.94746 0.98426 0.93966 1.21255 1.04516 0.92996 1.04123 1.18872 0.92220 0.89293 0.88047 1.83691 1.39804 1.38576 1.46270 1.20816 1.00998 1.01479 1.23465 0.87299 1.24458 0.94732 0.99890 0.94276 1.69642 1.20519 1.36233 1.23659 0.86367 0.81364 0.82632 0.77633 1.18925 1.20768 1.17625 1.17687 0.82095 0.88308 0.91400 1.41558 1.07471 1.07498 1.81840 1.15316 0.87194 0.87540 1.37753 1.24149 0.91288 0.93290 0.91541 1.81209 1.10719 1.07455 1.14349 0.88829 0.89364 0.87348 0.86131 0.86200 0.86290 0.83932 0.90655 0.75839 0.75018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.42 101.05 1.05 -1.14 16 2 S -0.02 -0.38 22.69 -107.50 -2.44 -2.82 16 3 C 0.12 2.17 7.54 -14.57 -0.11 2.07 16 4 N -0.25 -5.10 11.37 32.75 0.37 -4.73 16 5 N -0.30 -5.61 3.49 -9.41 -0.03 -5.64 16 6 C 0.04 0.77 6.05 -83.44 -0.50 0.27 16 7 C -0.08 -1.13 8.34 -39.42 -0.33 -1.46 16 8 C -0.19 -2.55 10.04 -39.56 -0.40 -2.95 16 9 C -0.06 -0.92 10.04 -39.57 -0.40 -1.31 16 10 C -0.21 -3.90 9.16 -39.43 -0.36 -4.26 16 11 C 0.17 3.63 6.65 -38.92 -0.26 3.37 16 12 O -0.18 -4.49 7.79 0.07 0.00 -4.49 16 13 C -0.39 -10.33 9.94 30.87 0.31 -10.02 16 14 H 0.11 2.87 5.44 -52.49 -0.29 2.59 16 15 C 0.07 1.93 5.49 -17.52 -0.10 1.83 16 16 N -0.87 -23.71 13.96 55.48 0.77 -22.94 16 17 Si 0.89 21.05 27.31 -169.99 -4.64 16.41 16 18 H -0.26 -5.88 6.38 56.52 0.36 -5.52 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.25 -6.18 7.11 56.52 0.40 -5.77 16 21 C 0.44 6.93 7.74 -153.48 -1.19 5.74 16 22 N -0.84 -9.27 8.89 31.46 0.28 -8.99 16 23 C -0.25 -4.28 6.20 -104.25 -0.65 -4.92 16 24 C 0.31 5.10 15.53 -22.47 -0.35 4.75 16 25 N -0.46 -7.88 18.54 41.84 0.78 -7.11 16 26 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 27 H 0.09 1.49 5.90 -51.92 -0.31 1.19 16 28 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.12 1.39 7.60 -52.48 -0.40 1.00 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.14 2.79 5.64 -52.48 -0.30 2.50 16 33 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.41 3.92 7.01 -40.82 -0.29 3.63 16 35 H 0.42 3.76 8.70 -40.82 -0.36 3.41 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -30.05 328.76 -6.03 -36.08 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -2.79 Total: 7.29 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -3.28 Total: -8.04 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 2.17 Total: -49.40 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: 0.00 Total: -4.49 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.64 Total: 16.41 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.44 Total: -2.82 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.05 -6.03 -36.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.956 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds