Wall clock time and date at job start Tue Mar 31 2020 10:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 O 1.42898 * 109.47162 * 240.00020 * 2 1 3 5 5 C 1.42906 * 113.99821 * 90.00300 * 4 2 1 6 6 C 1.53006 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47000 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47240 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00244 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47197 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47074 * 119.99839 * 13 11 9 16 16 H 1.48497 * 109.47111 * 239.99631 * 13 11 9 17 17 C 1.50699 * 109.47073 * 119.99868 * 2 1 3 18 18 C 1.38264 * 119.98054 * 265.00401 * 17 2 1 19 19 C 1.38205 * 120.03575 * 179.97438 * 18 17 2 20 20 C 1.38338 * 120.00385 * 359.97438 * 19 18 17 21 21 Cl 1.73595 * 120.02373 * 180.02562 * 20 19 18 22 22 C 1.38449 * 119.96042 * 359.97438 * 20 19 18 23 23 Cl 1.73601 * 120.02067 * 180.02562 * 22 20 19 24 24 C 1.38202 * 119.98132 * 84.72578 * 17 2 1 25 25 H 1.08996 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47093 * 300.00074 * 1 2 3 27 27 H 1.09006 * 109.46773 * 59.99762 * 1 2 3 28 28 H 1.09000 * 109.47490 * 59.99859 * 5 4 2 29 29 H 1.09001 * 109.47232 * 299.99213 * 5 4 2 30 30 H 1.08993 * 109.46955 * 299.99993 * 6 5 4 31 31 H 1.09000 * 109.47050 * 59.99822 * 6 5 4 32 32 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 33 33 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 34 34 H 1.09004 * 109.47107 * 300.00294 * 8 7 6 35 35 H 1.09000 * 109.46866 * 60.00185 * 8 7 6 36 36 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 37 37 H 1.08003 * 119.98203 * 359.97319 * 18 17 2 38 38 H 1.08005 * 119.99648 * 179.97438 * 19 18 17 39 39 H 1.08006 * 119.99512 * 0.02562 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2002 0.1830 -2.2941 6 6 2.7092 -0.6406 -3.4788 7 6 2.9161 0.2765 -4.6859 8 6 3.4245 -0.5471 -5.8709 9 6 3.6289 0.3562 -7.0597 10 1 3.4177 1.4123 -6.9781 11 6 4.0855 -0.1654 -8.2515 12 7 4.3431 -1.4513 -8.3507 13 14 4.3395 0.9544 -9.7249 14 1 3.9808 2.3473 -9.3556 15 1 5.7629 0.9042 -10.1452 16 1 3.4763 0.5019 -10.8452 17 6 2.0323 -0.7104 1.2305 18 6 2.3610 0.0146 2.3610 19 6 2.8213 -0.6358 3.4903 20 6 2.9529 -2.0129 3.4902 21 17 3.5304 -2.8304 4.9085 22 6 2.6228 -2.7389 2.3584 23 17 2.7868 -4.4672 2.3568 24 6 2.1588 -2.0866 1.2302 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.9320 0.9514 -2.0450 29 1 1.2539 0.6547 -2.5589 30 1 3.6555 -1.1119 -3.2137 31 1 1.9776 -1.4092 -3.7280 32 1 1.9696 0.7476 -4.9509 33 1 3.6475 1.0454 -4.4369 34 1 4.3710 -1.0186 -5.6063 35 1 2.6928 -1.3157 -6.1197 36 1 4.6640 -1.8184 -9.1892 37 1 2.2579 1.0897 2.3616 38 1 3.0782 -0.0688 4.3729 39 1 1.8980 -2.6526 0.3480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:29 Heat of formation + Delta-G solvation = -66.169882 kcal Electronic energy + Delta-G solvation = -20562.269781 eV Core-core repulsion = 17134.516756 eV Total energy + Delta-G solvation = -3427.753024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.074 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14971 -38.23923 -36.84398 -36.77820 -34.80992 -33.01580 -31.98925 -31.29804 -29.47676 -28.56661 -24.98980 -24.09176 -23.27090 -21.71577 -21.33969 -20.04193 -17.77020 -16.99782 -16.36969 -16.12649 -15.75636 -15.51176 -14.99694 -14.50296 -14.43592 -14.19345 -14.00310 -13.34807 -13.13531 -12.70428 -12.44898 -12.31282 -12.19035 -12.14031 -11.78536 -11.61434 -11.49515 -11.28493 -11.19625 -11.09806 -10.95877 -10.74239 -10.52050 -10.42638 -9.71729 -9.58734 -9.34232 -9.29081 -9.04912 -8.96198 -8.34265 -5.98994 -4.01508 0.53743 0.74467 1.51798 1.88965 3.02508 3.31112 3.38455 3.42224 3.52537 4.26213 4.31781 4.46736 4.66385 4.73911 4.87392 4.94397 4.99126 5.31749 5.32129 5.36518 5.37102 5.40894 5.47514 5.62698 5.70850 5.73063 5.89321 5.96310 6.08617 6.15308 6.21079 6.44933 6.76064 6.89778 7.07090 7.27036 7.69378 7.83883 8.01577 8.43589 9.06083 9.62517 11.12387 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.002081 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.868940 B =13454.846215 C =14112.683006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 H 0.074 0.926 4 O -0.379 6.379 5 C 0.064 3.936 6 C -0.116 4.116 7 C -0.107 4.107 8 C 0.021 3.979 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.065 4.065 18 C -0.097 4.097 19 C -0.100 4.100 20 C -0.033 4.033 21 Cl -0.053 7.053 22 C -0.032 4.032 23 Cl -0.048 7.048 24 C -0.070 4.070 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.424 1.089 28.130 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.067 3.933 3 H 0.092 0.908 4 O -0.298 6.298 5 C -0.012 4.012 6 C -0.154 4.154 7 C -0.145 4.145 8 C -0.016 4.016 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.066 4.066 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.061 4.061 21 Cl -0.024 7.024 22 C -0.060 4.060 23 Cl -0.019 7.019 24 C -0.089 4.089 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.259 0.527 28.125 28.818 hybrid contribution 0.233 0.556 -0.748 0.960 sum -6.026 1.083 27.377 28.053 Atomic orbital electron populations 1.22281 0.94551 1.03387 1.02556 1.20809 0.93867 0.95042 0.83620 0.90800 1.87948 1.86386 1.35755 1.19747 1.22780 0.99250 0.93260 0.85947 1.21645 1.01512 0.99119 0.93128 1.21575 1.00209 0.98042 0.94669 1.19097 0.96331 0.95090 0.91120 1.21302 1.43851 0.94685 0.96018 0.92677 1.25042 0.95631 0.95017 0.98892 1.69979 1.45778 1.11640 1.26060 0.86547 0.77770 0.80935 0.82806 1.19773 1.21017 1.21026 1.19899 0.98254 0.93270 0.95146 1.21040 0.98084 1.00577 0.91835 1.20966 0.99973 0.91370 0.99611 1.20809 1.03612 0.92978 0.88698 1.98389 1.87011 1.79046 1.37978 1.20821 1.04295 0.86084 0.94760 1.98400 1.96146 1.08749 1.98621 1.20969 0.97033 0.94227 0.96640 0.91436 0.91554 0.91465 0.93452 0.93386 0.91650 0.91627 0.93331 0.93344 0.96531 0.96527 0.93059 0.84313 0.83913 0.83155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.51 37.16 0.35 -1.07 16 2 C 0.12 1.21 2.93 -27.88 -0.08 1.13 16 3 H 0.07 0.62 7.70 -51.93 -0.40 0.22 16 4 O -0.38 -4.93 9.14 -35.23 -0.32 -5.26 16 5 C 0.06 0.86 5.75 37.16 0.21 1.08 16 6 C -0.12 -1.97 5.58 -26.73 -0.15 -2.12 16 7 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 8 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 9 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 10 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 13 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C -0.07 -0.62 5.00 -104.63 -0.52 -1.14 16 18 C -0.10 -0.73 9.68 -39.58 -0.38 -1.11 16 19 C -0.10 -0.77 9.83 -39.56 -0.39 -1.16 16 20 C -0.03 -0.32 6.32 -39.47 -0.25 -0.57 16 21 Cl -0.05 -0.48 27.96 -51.86 -1.45 -1.93 16 22 C -0.03 -0.34 6.32 -39.46 -0.25 -0.59 16 23 Cl -0.05 -0.51 27.96 -51.86 -1.45 -1.96 16 24 C -0.07 -0.74 9.13 -39.56 -0.36 -1.10 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.56 7.87 -51.93 -0.41 0.16 16 28 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.05 0.60 7.87 -51.93 -0.41 0.19 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 38 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.15 1.67 7.64 -52.48 -0.40 1.27 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -30.66 360.43 -10.39 -41.05 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -5.81 Total: -5.41 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -2.51 Total: -22.18 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.32 Total: -5.26 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -2.90 Total: -3.89 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.66 -10.39 -41.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.122 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds