Wall clock time and date at job start Tue Mar 31 2020 10:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 O 1.42898 * 109.47162 * 240.00020 * 2 1 3 5 5 C 1.42906 * 113.99821 * 90.00300 * 4 2 1 6 6 C 1.53006 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47000 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47240 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00244 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47197 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47074 * 119.99839 * 13 11 9 16 16 H 1.48497 * 109.47111 * 239.99631 * 13 11 9 17 17 C 1.50699 * 109.47073 * 119.99868 * 2 1 3 18 18 C 1.38264 * 119.98054 * 265.00401 * 17 2 1 19 19 C 1.38205 * 120.03575 * 179.97438 * 18 17 2 20 20 C 1.38338 * 120.00385 * 359.97438 * 19 18 17 21 21 Cl 1.73595 * 120.02373 * 180.02562 * 20 19 18 22 22 C 1.38449 * 119.96042 * 359.97438 * 20 19 18 23 23 Cl 1.73601 * 120.02067 * 180.02562 * 22 20 19 24 24 C 1.38202 * 119.98132 * 84.72578 * 17 2 1 25 25 H 1.08996 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47093 * 300.00074 * 1 2 3 27 27 H 1.09006 * 109.46773 * 59.99762 * 1 2 3 28 28 H 1.09000 * 109.47490 * 59.99859 * 5 4 2 29 29 H 1.09001 * 109.47232 * 299.99213 * 5 4 2 30 30 H 1.08993 * 109.46955 * 299.99993 * 6 5 4 31 31 H 1.09000 * 109.47050 * 59.99822 * 6 5 4 32 32 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 33 33 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 34 34 H 1.09004 * 109.47107 * 300.00294 * 8 7 6 35 35 H 1.09000 * 109.46866 * 60.00185 * 8 7 6 36 36 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 37 37 H 1.08003 * 119.98203 * 359.97319 * 18 17 2 38 38 H 1.08005 * 119.99648 * 179.97438 * 19 18 17 39 39 H 1.08006 * 119.99512 * 0.02562 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2002 0.1830 -2.2941 6 6 2.7092 -0.6406 -3.4788 7 6 2.9161 0.2765 -4.6859 8 6 3.4245 -0.5471 -5.8709 9 6 3.6289 0.3562 -7.0597 10 1 3.4177 1.4123 -6.9781 11 6 4.0855 -0.1654 -8.2515 12 7 4.3431 -1.4513 -8.3507 13 14 4.3395 0.9544 -9.7249 14 1 3.9808 2.3473 -9.3556 15 1 5.7629 0.9042 -10.1452 16 1 3.4763 0.5019 -10.8452 17 6 2.0323 -0.7104 1.2305 18 6 2.3610 0.0146 2.3610 19 6 2.8213 -0.6358 3.4903 20 6 2.9529 -2.0129 3.4902 21 17 3.5304 -2.8304 4.9085 22 6 2.6228 -2.7389 2.3584 23 17 2.7868 -4.4672 2.3568 24 6 2.1588 -2.0866 1.2302 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.9320 0.9514 -2.0450 29 1 1.2539 0.6547 -2.5589 30 1 3.6555 -1.1119 -3.2137 31 1 1.9776 -1.4092 -3.7280 32 1 1.9696 0.7476 -4.9509 33 1 3.6475 1.0454 -4.4369 34 1 4.3710 -1.0186 -5.6063 35 1 2.6928 -1.3157 -6.1197 36 1 4.6640 -1.8184 -9.1892 37 1 2.2579 1.0897 2.3616 38 1 3.0782 -0.0688 4.3729 39 1 1.8980 -2.6526 0.3480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:28 Heat of formation + Delta-G solvation = -80.734293 kcal Electronic energy + Delta-G solvation = -20562.901341 eV Core-core repulsion = 17134.516756 eV Total energy + Delta-G solvation = -3428.384585 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.074 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.85856 -39.13395 -37.57456 -37.56605 -36.45026 -34.55327 -33.32112 -31.97371 -30.47367 -29.96130 -26.67281 -24.91032 -24.07270 -23.21578 -22.16767 -21.60884 -18.55772 -18.35975 -17.83529 -17.00985 -16.83481 -16.54440 -16.26013 -15.76000 -15.51012 -15.04062 -14.83738 -14.54778 -14.18851 -14.09092 -13.63269 -13.48644 -13.24124 -12.94489 -12.94126 -12.87710 -12.65565 -12.47967 -12.31439 -12.29098 -12.10556 -11.99502 -11.95459 -11.65991 -11.43748 -11.30897 -11.06461 -10.56660 -10.53896 -9.99462 -9.67625 -8.19524 -6.31081 -0.15489 0.06839 0.78888 1.17158 1.40673 1.41037 1.54512 2.32630 2.41368 2.67374 3.13577 3.56559 3.63561 4.01095 4.07165 4.09546 4.18698 4.28907 4.30414 4.34327 4.48698 4.59262 4.65420 4.73728 4.76506 4.86517 4.87490 4.97720 5.05864 5.18657 5.24873 5.28064 5.32060 5.36074 5.54856 5.55878 5.76931 5.87065 6.24989 6.32363 6.87166 7.38517 8.92744 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.002081 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.868940 B =13454.846215 C =14112.683006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 H 0.096 0.904 4 O -0.400 6.400 5 C 0.074 3.926 6 C -0.111 4.111 7 C -0.094 4.094 8 C 0.020 3.980 9 C -0.541 4.541 10 H 0.064 0.936 11 C -0.006 4.006 12 N -0.936 5.936 13 Si 0.967 3.033 14 H -0.259 1.259 15 H -0.279 1.279 16 H -0.279 1.279 17 C -0.073 4.073 18 C -0.086 4.086 19 C -0.095 4.095 20 C -0.044 4.044 21 Cl -0.054 7.054 22 C -0.047 4.047 23 Cl -0.060 7.060 24 C -0.086 4.086 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.057 0.943 34 H -0.012 1.012 35 H -0.011 1.011 36 H 0.263 0.737 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 4.032 29.169 30.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.063 3.937 3 H 0.114 0.886 4 O -0.320 6.320 5 C -0.002 4.002 6 C -0.148 4.148 7 C -0.131 4.131 8 C -0.017 4.017 9 C -0.579 4.579 10 H 0.082 0.918 11 C -0.203 4.203 12 N -0.577 5.577 13 Si 0.792 3.208 14 H -0.183 1.183 15 H -0.205 1.205 16 H -0.204 1.204 17 C -0.074 4.074 18 C -0.104 4.104 19 C -0.113 4.113 20 C -0.071 4.071 21 Cl -0.025 7.025 22 C -0.074 4.074 23 Cl -0.031 7.031 24 C -0.105 4.105 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.191 0.809 38 H 0.188 0.812 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.683 3.476 29.184 30.141 hybrid contribution 0.360 -0.394 -1.013 1.145 sum -6.323 3.082 28.171 29.036 Atomic orbital electron populations 1.22267 0.93632 1.02913 1.03658 1.21053 0.94604 0.95793 0.82230 0.88580 1.87916 1.86850 1.36613 1.20595 1.22537 1.00208 0.92490 0.85006 1.21458 1.00871 0.98725 0.93780 1.21345 1.00493 0.97724 0.93559 1.19040 0.94382 0.94932 0.93306 1.21769 1.43742 0.95396 0.97031 0.91807 1.26054 0.95189 0.96612 1.02425 1.70121 1.46662 1.13764 1.27115 0.85362 0.77793 0.79206 0.78459 1.18257 1.20464 1.20446 1.20020 0.98653 0.92771 0.95935 1.21395 0.96240 1.02114 0.90610 1.21334 0.98725 0.90598 1.00640 1.21011 1.03885 0.93834 0.88379 1.98387 1.87020 1.79278 1.37802 1.20914 1.05449 0.85653 0.95428 1.98388 1.96281 1.09798 1.98672 1.20919 0.98204 0.95057 0.96306 0.92750 0.89334 0.91423 0.92016 0.91862 0.92907 0.92694 0.92336 0.92434 0.99358 0.99276 0.92824 0.80882 0.81200 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 9.51 71.98 0.68 -1.75 16 2 C 0.12 2.05 2.93 29.85 0.09 2.14 16 3 H 0.10 1.23 7.70 -2.39 -0.02 1.21 16 4 O -0.40 -9.96 9.14 -148.98 -1.36 -11.33 16 5 C 0.07 1.86 5.75 71.98 0.41 2.28 16 6 C -0.11 -3.76 5.58 30.60 0.17 -3.59 16 7 C -0.09 -3.74 5.15 30.60 0.16 -3.59 16 8 C 0.02 1.10 4.97 29.85 0.15 1.25 16 9 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 10 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 11 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 12 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 13 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 C -0.07 -1.25 5.00 -19.87 -0.10 -1.35 16 18 C -0.09 -1.00 9.68 22.27 0.22 -0.79 16 19 C -0.09 -1.18 9.83 22.29 0.22 -0.96 16 20 C -0.04 -0.77 6.32 22.34 0.14 -0.63 16 21 Cl -0.05 -0.93 27.96 -2.72 -0.08 -1.00 16 22 C -0.05 -0.98 6.32 22.35 0.14 -0.84 16 23 Cl -0.06 -1.32 27.96 -2.72 -0.08 -1.40 16 24 C -0.09 -1.82 9.13 22.29 0.20 -1.61 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.98 7.87 -2.38 -0.02 0.96 16 28 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 29 H 0.06 1.41 7.87 -2.39 -0.02 1.40 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 35 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.13 3.17 7.64 -2.91 -0.02 3.15 16 Total: -1.00 -67.64 360.43 5.00 -62.63 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.03 Total: 2.47 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 3.18 Total: -40.08 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.28 Total: -57.71 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -1.36 Total: -11.33 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.15 Total: -2.40 kcal Total: -67.64 5.00 -62.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.103 kcal (2) G-P(sol) polarization free energy of solvation -67.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds