Wall clock time and date at job start Tue Mar 31 2020 10:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47069 * 2 1 4 4 O 1.42901 * 109.47207 * 119.99683 * 2 1 3 5 5 C 1.42895 * 113.99948 * 270.00124 * 4 2 1 6 6 C 1.53006 * 109.47036 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47131 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47188 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00218 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99966 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99729 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 120.00167 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47149 * 90.00120 * 13 11 9 15 15 H 1.48501 * 109.47501 * 210.00465 * 13 11 9 16 16 H 1.48501 * 109.46930 * 330.00484 * 13 11 9 17 17 C 1.50696 * 109.46718 * 239.99543 * 2 1 3 18 18 C 1.38239 * 119.99760 * 264.99903 * 17 2 1 19 19 C 1.38192 * 120.03005 * 179.97438 * 18 17 2 20 20 C 1.38384 * 120.01480 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.01081 * 179.97438 * 20 19 18 22 22 C 1.38310 * 119.98332 * 0.02562 * 20 19 18 23 23 C 1.38343 * 119.98878 * 84.72763 * 17 2 1 24 24 Cl 1.73598 * 120.00988 * 0.02562 * 23 17 2 25 25 H 1.09000 * 109.47032 * 60.00021 * 1 2 3 26 26 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46875 * 300.00243 * 1 2 3 28 28 H 1.09001 * 109.47626 * 60.00343 * 5 4 2 29 29 H 1.09001 * 109.47255 * 300.00084 * 5 4 2 30 30 H 1.09001 * 109.47002 * 299.99477 * 6 5 4 31 31 H 1.08993 * 109.46955 * 59.99914 * 6 5 4 32 32 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 33 33 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 34 34 H 1.09001 * 109.46997 * 299.99574 * 8 7 6 35 35 H 1.08992 * 109.47534 * 59.99520 * 8 7 6 36 36 H 0.96996 * 119.99717 * 179.97438 * 12 11 9 37 37 H 1.08001 * 119.98300 * 359.95937 * 18 17 2 38 38 H 1.08006 * 119.99698 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.01118 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2940 6 6 2.7092 -0.6405 3.4789 7 6 2.9172 0.2768 4.6856 8 6 3.4268 -0.5465 5.8702 9 6 3.6311 0.3568 7.0589 10 1 3.4191 1.4127 6.9776 11 6 4.0898 -0.1645 8.2502 12 7 4.2685 0.6240 9.2875 13 14 4.4572 -1.9905 8.3908 14 1 5.8740 -2.2402 8.0226 15 1 4.2227 -2.4366 9.7876 16 1 3.5669 -2.7465 7.4737 17 6 2.0323 -0.7105 -1.2304 18 6 2.3610 -2.0518 -1.1682 19 6 2.8211 -2.7041 -2.2962 20 6 2.9526 -2.0151 -3.4891 21 17 3.5312 -2.8345 -4.9059 22 6 2.6238 -0.6731 -3.5520 23 6 2.1589 -0.0216 -2.4234 24 17 1.7400 1.6612 -2.5030 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.2538 0.6548 2.5589 29 1 2.9320 0.9515 2.0449 30 1 1.9776 -1.4091 3.7281 31 1 3.6555 -1.1118 3.2138 32 1 3.6489 1.0452 4.4361 33 1 1.9710 0.7486 4.9508 34 1 2.6954 -1.3151 6.1199 35 1 4.3730 -1.0180 5.6047 36 1 4.5908 0.2573 10.1256 37 1 2.2584 -2.5900 -0.2375 38 1 3.0782 -3.7520 -2.2469 39 1 2.7259 -0.1350 -4.4828 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:32 Heat of formation + Delta-G solvation = -61.994746 kcal Electronic energy + Delta-G solvation = -20736.335811 eV Core-core repulsion = 17308.763834 eV Total energy + Delta-G solvation = -3427.571977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.074 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22638 -38.24748 -37.17126 -36.66272 -34.96361 -33.05625 -32.05549 -31.36168 -29.54011 -28.99246 -25.11868 -24.07859 -23.30070 -21.55876 -21.36018 -20.05410 -17.87974 -17.10371 -16.67771 -16.22741 -15.83971 -15.41777 -15.07685 -14.58379 -14.34223 -14.18434 -14.02374 -13.40088 -13.21875 -12.85619 -12.64318 -12.58737 -12.36430 -12.25747 -11.89110 -11.74658 -11.52343 -11.40701 -11.31822 -11.28901 -10.96627 -10.71010 -10.67403 -9.92085 -9.73620 -9.66028 -9.58985 -9.37938 -9.17158 -9.01275 -8.52774 -6.03507 -4.01412 0.50540 0.67740 1.39744 1.84823 2.99230 3.31841 3.39007 3.41603 3.43325 4.27452 4.34022 4.46378 4.54017 4.70430 4.84031 4.92590 5.02122 5.25290 5.30660 5.31241 5.32137 5.36635 5.46597 5.60209 5.63673 5.74201 5.82718 5.90144 5.99492 6.02711 6.15731 6.31681 6.60433 6.69894 6.88110 7.17827 7.31448 7.44492 7.80727 8.54900 9.01420 9.59216 11.10000 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.002300 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.102777 B =12171.446371 C =13169.776626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 H 0.078 0.922 4 O -0.379 6.379 5 C 0.063 3.937 6 C -0.118 4.118 7 C -0.100 4.100 8 C -0.013 4.013 9 C -0.521 4.521 10 H 0.071 0.929 11 C 0.064 3.936 12 N -0.905 5.905 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.265 1.265 17 C -0.068 4.068 18 C -0.067 4.067 19 C -0.106 4.106 20 C -0.027 4.027 21 Cl -0.061 7.061 22 C -0.104 4.104 23 C -0.021 4.021 24 Cl -0.055 7.055 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.016 0.984 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 -4.129 -30.288 31.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.064 3.936 3 H 0.096 0.904 4 O -0.299 6.299 5 C -0.013 4.013 6 C -0.156 4.156 7 C -0.138 4.138 8 C -0.051 4.051 9 C -0.559 4.559 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.544 5.544 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.190 1.190 17 C -0.069 4.069 18 C -0.086 4.086 19 C -0.125 4.125 20 C -0.054 4.054 21 Cl -0.032 7.032 22 C -0.123 4.123 23 C -0.048 4.048 24 Cl -0.026 7.026 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.170 0.830 38 H 0.159 0.841 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.171 -4.239 -30.225 31.138 hybrid contribution 0.264 -0.516 0.036 0.581 sum -5.907 -4.755 -30.189 31.127 Atomic orbital electron populations 1.22243 0.94263 1.03282 1.02808 1.20815 0.94078 0.95310 0.83369 0.90413 1.87875 1.86451 1.35803 1.19781 1.22755 0.99515 0.93232 0.85789 1.21668 1.01434 0.99144 0.93340 1.21400 1.00836 0.97864 0.93687 1.19561 0.95714 0.96089 0.93718 1.21167 1.44133 0.96249 0.94325 0.91088 1.25054 0.95002 0.97848 0.95743 1.69922 1.46823 1.35359 1.02285 0.86758 0.79110 0.86112 0.77195 1.20309 1.21433 1.18954 1.19798 0.99164 0.94551 0.93384 1.21049 0.95747 0.93046 0.98713 1.21246 0.99351 1.01050 0.90829 1.20779 1.02646 0.92712 0.89238 1.98389 1.87135 1.78602 1.39104 1.20814 1.00123 0.92939 0.98467 1.20537 1.03454 0.86362 0.94469 1.98389 1.91736 1.14059 1.98386 0.91447 0.91458 0.91342 0.93187 0.93280 0.91617 0.91670 0.92715 0.92671 0.96584 0.97021 0.92773 0.83000 0.84075 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.51 37.16 0.35 -1.18 16 2 C 0.12 1.27 2.44 -27.88 -0.07 1.20 16 3 H 0.08 0.80 6.78 -51.93 -0.35 0.45 16 4 O -0.38 -4.77 8.82 -35.23 -0.31 -5.08 16 5 C 0.06 0.83 5.75 37.16 0.21 1.05 16 6 C -0.12 -1.86 5.58 -26.73 -0.15 -2.01 16 7 C -0.10 -1.93 5.15 -26.73 -0.14 -2.07 16 8 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 9 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 10 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 11 C 0.06 1.89 5.47 -17.81 -0.10 1.80 16 12 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 13 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 17 C -0.07 -0.67 5.07 -104.58 -0.53 -1.20 16 18 C -0.07 -0.62 9.35 -39.60 -0.37 -0.99 16 19 C -0.11 -0.87 9.83 -39.54 -0.39 -1.26 16 20 C -0.03 -0.22 6.32 -39.50 -0.25 -0.47 16 21 Cl -0.06 -0.47 28.96 -51.86 -1.50 -1.98 16 22 C -0.10 -0.87 9.62 -39.51 -0.38 -1.25 16 23 C -0.02 -0.19 6.31 -39.50 -0.25 -0.44 16 24 Cl -0.05 -0.47 27.13 -51.86 -1.41 -1.88 16 25 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.61 7.87 -51.93 -0.41 0.21 16 28 H 0.05 0.62 7.87 -51.93 -0.41 0.21 16 29 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 35 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.15 1.40 7.35 -52.49 -0.39 1.01 16 38 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -30.42 354.91 -9.96 -40.38 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.70 Total: -4.14 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -2.50 Total: -22.53 kcal Atomic # 7 Polarization: -28.09 SS G_CDS: 0.77 Total: -27.32 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.31 Total: -5.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -2.91 Total: -3.86 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.42 -9.96 -40.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.615 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds