Wall clock time and date at job start Tue Mar 31 2020 10:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47069 * 2 1 4 4 O 1.42901 * 109.47207 * 119.99683 * 2 1 3 5 5 C 1.42895 * 113.99948 * 270.00124 * 4 2 1 6 6 C 1.53006 * 109.47036 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47131 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47188 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00218 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99966 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99729 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 120.00167 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47149 * 90.00120 * 13 11 9 15 15 H 1.48501 * 109.47501 * 210.00465 * 13 11 9 16 16 H 1.48501 * 109.46930 * 330.00484 * 13 11 9 17 17 C 1.50696 * 109.46718 * 239.99543 * 2 1 3 18 18 C 1.38239 * 119.99760 * 264.99903 * 17 2 1 19 19 C 1.38192 * 120.03005 * 179.97438 * 18 17 2 20 20 C 1.38384 * 120.01480 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.01081 * 179.97438 * 20 19 18 22 22 C 1.38310 * 119.98332 * 0.02562 * 20 19 18 23 23 C 1.38343 * 119.98878 * 84.72763 * 17 2 1 24 24 Cl 1.73598 * 120.00988 * 0.02562 * 23 17 2 25 25 H 1.09000 * 109.47032 * 60.00021 * 1 2 3 26 26 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46875 * 300.00243 * 1 2 3 28 28 H 1.09001 * 109.47626 * 60.00343 * 5 4 2 29 29 H 1.09001 * 109.47255 * 300.00084 * 5 4 2 30 30 H 1.09001 * 109.47002 * 299.99477 * 6 5 4 31 31 H 1.08993 * 109.46955 * 59.99914 * 6 5 4 32 32 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 33 33 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 34 34 H 1.09001 * 109.46997 * 299.99574 * 8 7 6 35 35 H 1.08992 * 109.47534 * 59.99520 * 8 7 6 36 36 H 0.96996 * 119.99717 * 179.97438 * 12 11 9 37 37 H 1.08001 * 119.98300 * 359.95937 * 18 17 2 38 38 H 1.08006 * 119.99698 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.01118 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2940 6 6 2.7092 -0.6405 3.4789 7 6 2.9172 0.2768 4.6856 8 6 3.4268 -0.5465 5.8702 9 6 3.6311 0.3568 7.0589 10 1 3.4191 1.4127 6.9776 11 6 4.0898 -0.1645 8.2502 12 7 4.2685 0.6240 9.2875 13 14 4.4572 -1.9905 8.3908 14 1 5.8740 -2.2402 8.0226 15 1 4.2227 -2.4366 9.7876 16 1 3.5669 -2.7465 7.4737 17 6 2.0323 -0.7105 -1.2304 18 6 2.3610 -2.0518 -1.1682 19 6 2.8211 -2.7041 -2.2962 20 6 2.9526 -2.0151 -3.4891 21 17 3.5312 -2.8345 -4.9059 22 6 2.6238 -0.6731 -3.5520 23 6 2.1589 -0.0216 -2.4234 24 17 1.7400 1.6612 -2.5030 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.2538 0.6548 2.5589 29 1 2.9320 0.9515 2.0449 30 1 1.9776 -1.4091 3.7281 31 1 3.6555 -1.1118 3.2138 32 1 3.6489 1.0452 4.4361 33 1 1.9710 0.7486 4.9508 34 1 2.6954 -1.3151 6.1199 35 1 4.3730 -1.0180 5.6047 36 1 4.5908 0.2573 10.1256 37 1 2.2584 -2.5900 -0.2375 38 1 3.0782 -3.7520 -2.2469 39 1 2.7259 -0.1350 -4.4828 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:31 Heat of formation + Delta-G solvation = -76.568147 kcal Electronic energy + Delta-G solvation = -20736.967761 eV Core-core repulsion = 17308.763834 eV Total energy + Delta-G solvation = -3428.203927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.074 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92793 -39.13166 -37.82972 -37.32792 -36.50619 -34.58242 -33.46981 -32.01180 -30.81825 -30.06500 -26.69784 -24.88210 -24.05638 -23.00353 -22.19722 -21.62637 -18.88373 -18.52004 -17.93240 -17.03125 -16.86546 -16.38288 -16.14761 -15.75549 -15.59797 -15.00613 -14.95833 -14.80265 -14.21805 -14.14887 -13.80224 -13.61158 -13.48638 -13.20163 -12.95749 -12.92711 -12.76074 -12.43431 -12.26463 -12.09904 -12.03196 -11.98343 -11.76350 -11.60044 -11.43616 -11.36234 -11.26518 -10.75261 -10.62139 -10.03291 -9.68954 -8.28603 -6.32625 -0.16392 0.02300 0.74917 1.19928 1.37272 1.38995 1.51444 2.31500 2.37560 2.52109 3.06869 3.54378 3.68263 3.90766 3.97587 4.06678 4.15103 4.18424 4.26917 4.35442 4.43600 4.52839 4.59516 4.67505 4.71244 4.81047 4.85080 4.93886 5.08371 5.11754 5.14337 5.19294 5.22977 5.24350 5.50041 5.56607 5.64529 5.68908 6.22227 6.30265 6.75779 7.32142 8.88218 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.002300 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.102777 B =12171.446371 C =13169.776626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.120 3.880 3 H 0.078 0.922 4 O -0.388 6.388 5 C 0.068 3.932 6 C -0.108 4.108 7 C -0.094 4.094 8 C -0.013 4.013 9 C -0.534 4.534 10 H 0.031 0.969 11 C 0.000 4.000 12 N -0.953 5.953 13 Si 0.953 3.047 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.245 1.245 17 C -0.080 4.080 18 C -0.075 4.075 19 C -0.103 4.103 20 C -0.031 4.031 21 Cl -0.055 7.055 22 C -0.104 4.104 23 C -0.027 4.027 24 Cl -0.053 7.053 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.020 0.980 35 H 0.018 0.982 36 H 0.266 0.734 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 -5.898 -32.095 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.063 3.937 3 H 0.096 0.904 4 O -0.307 6.307 5 C -0.008 4.008 6 C -0.146 4.146 7 C -0.131 4.131 8 C -0.050 4.050 9 C -0.572 4.572 10 H 0.050 0.950 11 C -0.196 4.196 12 N -0.594 5.594 13 Si 0.776 3.224 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.168 1.168 17 C -0.081 4.081 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.058 4.058 21 Cl -0.026 7.026 22 C -0.123 4.123 23 C -0.054 4.054 24 Cl -0.024 7.024 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.169 0.831 38 H 0.176 0.824 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.309 -6.003 -32.060 33.221 hybrid contribution 0.297 0.124 0.553 0.640 sum -6.012 -5.879 -31.507 32.609 Atomic orbital electron populations 1.22216 0.93356 1.03395 1.03273 1.20919 0.94800 0.95222 0.82775 0.90425 1.87837 1.86761 1.36012 1.20126 1.22569 1.00006 0.92775 0.85415 1.21461 1.01789 0.98552 0.92772 1.21246 1.00352 0.97840 0.93698 1.19539 0.96279 0.95786 0.93441 1.21558 1.43715 0.95414 0.96499 0.95024 1.26079 0.94834 1.03479 0.95251 1.70079 1.48252 1.37942 1.03116 0.85617 0.79655 0.79452 0.77684 1.19177 1.21028 1.16820 1.19826 0.99926 0.94936 0.93374 1.21096 0.96210 0.92956 0.99099 1.21427 0.98552 1.01843 0.90378 1.20878 1.02558 0.92841 0.89549 1.98393 1.87035 1.78460 1.38739 1.20990 0.99501 0.93079 0.98766 1.20577 1.03789 0.86509 0.94541 1.98388 1.91745 1.13909 1.98378 0.90552 0.91508 0.91293 0.92317 0.92891 0.91310 0.91549 0.93105 0.92903 0.96127 0.96354 0.92542 0.83112 0.82405 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.51 71.98 0.68 -2.07 16 2 C 0.12 2.34 2.44 29.85 0.07 2.41 16 3 H 0.08 1.50 6.78 -2.39 -0.02 1.48 16 4 O -0.39 -9.10 8.82 -148.98 -1.31 -10.41 16 5 C 0.07 1.69 5.75 71.98 0.41 2.11 16 6 C -0.11 -3.21 5.58 30.60 0.17 -3.03 16 7 C -0.09 -3.53 5.15 30.59 0.16 -3.37 16 8 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 9 C -0.53 -31.12 9.66 25.60 0.25 -30.87 16 10 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 11 C 0.00 0.00 5.47 84.66 0.46 0.46 16 12 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 13 Si 0.95 44.55 27.47 68.60 1.88 46.43 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.24 -10.57 6.54 99.48 0.65 -9.91 16 17 C -0.08 -1.46 5.07 -19.84 -0.10 -1.56 16 18 C -0.08 -1.29 9.35 22.26 0.21 -1.08 16 19 C -0.10 -1.51 9.83 22.29 0.22 -1.29 16 20 C -0.03 -0.47 6.32 22.32 0.14 -0.33 16 21 Cl -0.06 -0.76 28.96 -2.72 -0.08 -0.84 16 22 C -0.10 -1.56 9.62 22.32 0.21 -1.35 16 23 C -0.03 -0.46 6.31 22.32 0.14 -0.32 16 24 Cl -0.05 -0.85 27.13 -2.72 -0.07 -0.93 16 25 H 0.08 1.12 7.87 -2.39 -0.02 1.10 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.13 7.87 -2.38 -0.02 1.11 16 28 H 0.06 1.35 7.87 -2.39 -0.02 1.33 16 29 H 0.05 1.27 8.08 -2.39 -0.02 1.25 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 35 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16 36 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.15 2.57 7.35 -2.91 -0.02 2.55 16 38 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 39 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -65.17 354.91 4.85 -60.32 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.98 Total: 6.35 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 3.15 Total: -40.79 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.30 Total: -60.14 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -1.31 Total: -10.41 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.15 Total: -1.76 kcal Total: -65.17 4.85 -60.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.245 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds