Wall clock time and date at job start Tue Mar 31 2020 11:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36272 * 119.93686 * 2 1 4 4 C 1.40911 * 119.87325 * 179.76430 * 3 2 1 5 5 C 1.41027 * 120.12326 * 180.25476 * 4 3 2 6 6 H 1.07998 * 120.00901 * 214.77574 * 5 4 3 7 7 C 1.40018 * 119.99212 * 34.77160 * 5 4 3 8 8 N 1.30787 * 120.00375 * 356.13330 * 7 5 4 9 9 Si 1.86804 * 119.99796 * 176.13674 * 7 5 4 10 10 H 1.48501 * 109.47341 * 89.99727 * 9 7 5 11 11 H 1.48494 * 109.47232 * 210.00154 * 9 7 5 12 12 H 1.48508 * 109.47076 * 329.99885 * 9 7 5 13 13 C 1.40955 * 119.76604 * 0.48792 * 4 3 2 14 14 C 1.36234 * 119.87415 * 359.47128 * 13 4 3 15 15 C 1.39915 * 119.93676 * 179.97438 * 2 1 3 16 16 C 1.47989 * 119.88270 * 0.02562 * 15 2 1 17 17 C 1.39625 * 120.13930 * 284.04936 * 16 15 2 18 18 C 1.37923 * 119.84884 * 180.02562 * 17 16 15 19 19 C 1.38403 * 120.14469 * 359.97438 * 18 17 16 20 20 C 1.38364 * 120.29600 * 0.02562 * 19 18 17 21 21 C 1.37966 * 120.14405 * 359.67541 * 20 19 18 22 22 S 1.76197 * 120.07715 * 180.30072 * 21 20 19 23 23 C 1.81397 * 104.44855 * 114.53845 * 22 21 20 24 24 O 1.42095 * 104.27812 * 230.60618 * 22 21 20 25 25 O 1.42095 * 104.27605 * 358.46922 * 22 21 20 26 26 H 1.08999 * 109.47352 * 274.84661 * 1 2 3 27 27 H 1.09006 * 109.46741 * 34.84663 * 1 2 3 28 28 H 1.08998 * 109.47394 * 154.84473 * 1 2 3 29 29 H 1.07992 * 120.06403 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00192 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.06168 * 179.74206 * 13 4 3 32 32 H 1.07996 * 119.94163 * 180.27978 * 14 13 4 33 33 H 1.07998 * 120.07731 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.92449 * 179.97438 * 18 17 16 35 35 H 1.07999 * 119.85145 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.93258 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.47465 * 65.72463 * 23 22 21 38 38 H 1.09001 * 109.47436 * 185.72271 * 23 22 21 39 39 H 1.09006 * 109.47567 * 305.71997 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1871 1.1809 0.0000 4 6 3.5962 1.1793 0.0050 5 6 4.3053 2.3984 0.0105 6 1 5.2428 2.4803 -0.5194 7 6 3.7937 3.5026 0.7029 8 7 2.6230 3.4270 1.2810 9 14 4.7834 5.0839 0.8009 10 1 4.4358 5.9575 -0.3486 11 1 4.4682 5.7872 2.0702 12 1 6.2330 4.7641 0.7590 13 6 4.2947 -0.0450 -0.0004 14 6 3.6048 -1.2198 0.0005 15 6 2.2053 -1.2125 0.0005 16 6 1.4613 -2.4917 0.0005 17 6 0.8550 -2.9502 1.1718 18 6 0.1636 -4.1435 1.1651 19 6 0.0696 -4.8859 0.0008 20 6 0.6681 -4.4372 -1.1633 21 6 1.3575 -3.2422 -1.1718 22 16 2.1122 -2.6687 -2.6571 23 6 1.2018 -1.1558 -3.0725 24 8 3.4456 -2.3594 -2.2758 25 8 1.8399 -3.6909 -3.6058 26 1 -0.3634 0.0868 1.0240 27 1 -0.3633 0.8434 -0.5872 28 1 -0.3634 -0.9302 -0.4368 29 1 1.6472 2.1162 -0.0004 30 1 2.2684 4.1921 1.7604 31 1 5.3746 -0.0517 -0.0008 32 1 4.1389 -2.1584 0.0009 33 1 0.9280 -2.3720 2.0811 34 1 -0.3055 -4.4995 2.0705 35 1 -0.4734 -5.8194 0.0008 36 1 0.5914 -5.0214 -2.0684 37 1 1.3859 -0.3997 -2.3092 38 1 1.5374 -0.7839 -4.0406 39 1 0.1348 -1.3745 -3.1174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239775732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:28 Heat of formation + Delta-G solvation = -26.863401 kcal Electronic energy + Delta-G solvation = -24467.845456 eV Core-core repulsion = 21046.273444 eV Total energy + Delta-G solvation = -3421.572012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.28161 -37.59551 -36.56956 -35.47921 -34.06849 -31.96027 -31.30399 -30.88997 -29.03942 -28.74917 -25.97367 -25.30913 -22.84949 -22.28611 -20.62414 -19.66674 -18.60129 -17.34761 -17.13927 -15.85720 -15.81859 -15.61876 -15.26717 -14.50854 -14.40466 -14.04134 -13.87184 -13.55868 -13.20927 -12.94478 -12.74314 -12.43191 -12.36898 -12.15316 -11.93052 -11.66405 -11.61494 -11.56246 -11.46135 -11.44128 -11.17800 -10.89995 -10.79140 -10.55019 -10.32145 -10.08353 -9.70959 -9.58804 -9.24942 -9.09154 -8.45548 -7.41688 -7.26922 -6.75920 -4.52753 0.51076 1.15610 1.56913 2.54522 3.00904 3.02351 3.06497 3.11828 3.28700 3.74070 3.87149 4.22580 4.52899 4.65968 5.03228 5.13705 5.16278 5.18118 5.37894 5.49386 5.56995 5.75347 5.90002 5.96115 6.02693 6.10877 6.23610 6.27422 6.37252 6.41151 6.55232 6.57281 6.68581 6.87552 7.00317 7.11433 7.21485 7.28699 7.58895 7.78562 7.97944 7.99965 8.23107 8.53890 8.79895 8.86469 10.12946 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.004583 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.058509 B = 6108.666089 C = 6724.745722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.051 4.051 3 C -0.165 4.165 4 C 0.122 3.878 5 C -0.455 4.455 6 H 0.079 0.921 7 C 0.071 3.929 8 N -0.801 5.801 9 Si 0.916 3.084 10 H -0.269 1.269 11 H -0.277 1.277 12 H -0.262 1.262 13 C -0.222 4.222 14 C -0.013 4.013 15 C -0.261 4.261 16 C 0.120 3.880 17 C -0.139 4.139 18 C -0.071 4.071 19 C -0.163 4.163 20 C -0.027 4.027 21 C -0.662 4.662 22 S 2.499 3.501 23 C -0.652 4.652 24 O -0.918 6.918 25 O -0.964 6.964 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.131 0.869 30 H 0.280 0.720 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.703 -7.592 -2.491 10.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.051 4.051 3 C -0.184 4.184 4 C 0.120 3.880 5 C -0.485 4.485 6 H 0.097 0.903 7 C -0.146 4.146 8 N -0.427 5.427 9 Si 0.740 3.260 10 H -0.194 1.194 11 H -0.202 1.202 12 H -0.185 1.185 13 C -0.241 4.241 14 C -0.032 4.032 15 C -0.263 4.263 16 C 0.119 3.881 17 C -0.158 4.158 18 C -0.089 4.089 19 C -0.182 4.182 20 C -0.046 4.046 21 C -0.750 4.750 22 S 2.680 3.320 23 C -0.802 4.802 24 O -0.915 6.915 25 O -0.961 6.961 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.144 0.856 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.186 -7.822 -2.790 10.355 hybrid contribution -0.343 0.974 0.895 1.367 sum -6.529 -6.848 -1.895 9.650 Atomic orbital electron populations 1.20797 0.93827 1.00704 1.01427 1.19192 0.93501 0.92556 0.99880 1.21114 0.94548 0.96265 1.06475 1.17789 0.91993 0.92186 0.86061 1.19632 1.06408 0.94599 1.27868 0.90269 1.25945 0.94773 1.00119 0.93732 1.69738 1.15885 1.31381 1.25716 0.86184 0.80866 0.80539 0.78396 1.19377 1.20207 1.18547 1.20786 0.98169 0.92370 1.12801 1.20205 0.91671 0.97167 0.94141 1.18110 0.93079 0.89483 1.25636 1.18572 0.88008 0.91226 0.90314 1.21574 0.99156 0.96505 0.98550 1.21341 0.95726 0.94090 0.97721 1.21146 1.02934 1.00819 0.93316 1.20834 0.91897 0.93177 0.98734 1.30662 1.18721 1.06635 1.18933 1.04959 0.76278 0.76510 0.74256 1.30274 1.14666 1.22458 1.12796 1.93652 1.31644 1.84654 1.81553 1.93499 1.86382 1.54949 1.61259 0.92214 0.92398 0.93267 0.85135 0.90916 0.88537 0.88368 0.85411 0.86054 0.85973 0.84556 0.83250 0.85607 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 9.25 36.01 0.33 -1.57 16 2 C -0.05 -1.06 3.99 -104.70 -0.42 -1.47 16 3 C -0.16 -3.91 8.25 -39.28 -0.32 -4.24 16 4 C 0.12 3.08 5.55 -106.80 -0.59 2.49 16 5 C -0.46 -11.52 9.02 -37.86 -0.34 -11.86 16 6 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 7 C 0.07 1.70 5.42 -17.33 -0.09 1.60 16 8 N -0.80 -19.61 10.60 55.55 0.59 -19.02 16 9 Si 0.92 18.07 29.56 -169.99 -5.03 13.04 16 10 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 11 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 12 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 13 C -0.22 -5.32 9.73 -39.27 -0.38 -5.70 16 14 C -0.01 -0.29 7.11 -39.66 -0.28 -0.58 16 15 C -0.26 -5.33 3.54 -104.63 -0.37 -5.70 16 16 C 0.12 2.12 3.70 -104.88 -0.39 1.74 16 17 C -0.14 -2.20 9.59 -39.18 -0.38 -2.57 16 18 C -0.07 -0.93 10.03 -39.64 -0.40 -1.32 16 19 C -0.16 -2.09 10.04 -39.47 -0.40 -2.49 16 20 C -0.03 -0.40 9.49 -39.63 -0.38 -0.78 16 21 C -0.66 -10.92 5.61 -39.18 -0.22 -11.14 16 22 S 2.50 41.12 5.26 -107.50 -0.57 40.55 16 23 C -0.65 -9.06 10.56 101.05 1.07 -7.99 16 24 O -0.92 -18.26 14.24 -57.54 -0.82 -19.08 16 25 O -0.96 -16.79 16.74 -57.54 -0.96 -17.75 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 28 H 0.05 0.76 6.88 -51.93 -0.36 0.40 16 29 H 0.13 3.23 6.15 -52.49 -0.32 2.91 16 30 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 31 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 32 H 0.10 2.13 7.63 -52.49 -0.40 1.73 16 33 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.14 1.78 7.21 -52.49 -0.38 1.40 16 37 H 0.15 2.42 5.05 -51.93 -0.26 2.16 16 38 H 0.13 1.45 8.14 -51.92 -0.42 1.03 16 39 H 0.12 1.37 8.14 -51.92 -0.42 0.95 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -29.33 332.45 -9.98 -39.31 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.65 Total: 9.50 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: -3.56 Total: -51.57 kcal Atomic # 7 Polarization: -19.61 SS G_CDS: 0.59 Total: -19.02 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.78 Total: -36.83 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 41.12 SS G_CDS: -0.57 Total: 40.55 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.33 -9.98 -39.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239775732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.451 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds