Wall clock time and date at job start Tue Mar 31 2020 11:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36272 * 119.93686 * 2 1 4 4 C 1.40911 * 119.87325 * 179.76430 * 3 2 1 5 5 C 1.41027 * 120.12326 * 180.25476 * 4 3 2 6 6 H 1.07998 * 120.00901 * 214.77574 * 5 4 3 7 7 C 1.40018 * 119.99212 * 34.77160 * 5 4 3 8 8 N 1.30787 * 120.00375 * 356.13330 * 7 5 4 9 9 Si 1.86804 * 119.99796 * 176.13674 * 7 5 4 10 10 H 1.48501 * 109.47341 * 89.99727 * 9 7 5 11 11 H 1.48494 * 109.47232 * 210.00154 * 9 7 5 12 12 H 1.48508 * 109.47076 * 329.99885 * 9 7 5 13 13 C 1.40955 * 119.76604 * 0.48792 * 4 3 2 14 14 C 1.36234 * 119.87415 * 359.47128 * 13 4 3 15 15 C 1.39915 * 119.93676 * 179.97438 * 2 1 3 16 16 C 1.47989 * 119.88270 * 0.02562 * 15 2 1 17 17 C 1.39625 * 120.13930 * 284.04936 * 16 15 2 18 18 C 1.37923 * 119.84884 * 180.02562 * 17 16 15 19 19 C 1.38403 * 120.14469 * 359.97438 * 18 17 16 20 20 C 1.38364 * 120.29600 * 0.02562 * 19 18 17 21 21 C 1.37966 * 120.14405 * 359.67541 * 20 19 18 22 22 S 1.76197 * 120.07715 * 180.30072 * 21 20 19 23 23 C 1.81397 * 104.44855 * 114.53845 * 22 21 20 24 24 O 1.42095 * 104.27812 * 230.60618 * 22 21 20 25 25 O 1.42095 * 104.27605 * 358.46922 * 22 21 20 26 26 H 1.08999 * 109.47352 * 274.84661 * 1 2 3 27 27 H 1.09006 * 109.46741 * 34.84663 * 1 2 3 28 28 H 1.08998 * 109.47394 * 154.84473 * 1 2 3 29 29 H 1.07992 * 120.06403 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00192 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.06168 * 179.74206 * 13 4 3 32 32 H 1.07996 * 119.94163 * 180.27978 * 14 13 4 33 33 H 1.07998 * 120.07731 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.92449 * 179.97438 * 18 17 16 35 35 H 1.07999 * 119.85145 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.93258 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.47465 * 65.72463 * 23 22 21 38 38 H 1.09001 * 109.47436 * 185.72271 * 23 22 21 39 39 H 1.09006 * 109.47567 * 305.71997 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1871 1.1809 0.0000 4 6 3.5962 1.1793 0.0050 5 6 4.3053 2.3984 0.0105 6 1 5.2428 2.4803 -0.5194 7 6 3.7937 3.5026 0.7029 8 7 2.6230 3.4270 1.2810 9 14 4.7834 5.0839 0.8009 10 1 4.4358 5.9575 -0.3486 11 1 4.4682 5.7872 2.0702 12 1 6.2330 4.7641 0.7590 13 6 4.2947 -0.0450 -0.0004 14 6 3.6048 -1.2198 0.0005 15 6 2.2053 -1.2125 0.0005 16 6 1.4613 -2.4917 0.0005 17 6 0.8550 -2.9502 1.1718 18 6 0.1636 -4.1435 1.1651 19 6 0.0696 -4.8859 0.0008 20 6 0.6681 -4.4372 -1.1633 21 6 1.3575 -3.2422 -1.1718 22 16 2.1122 -2.6687 -2.6571 23 6 1.2018 -1.1558 -3.0725 24 8 3.4456 -2.3594 -2.2758 25 8 1.8399 -3.6909 -3.6058 26 1 -0.3634 0.0868 1.0240 27 1 -0.3633 0.8434 -0.5872 28 1 -0.3634 -0.9302 -0.4368 29 1 1.6472 2.1162 -0.0004 30 1 2.2684 4.1921 1.7604 31 1 5.3746 -0.0517 -0.0008 32 1 4.1389 -2.1584 0.0009 33 1 0.9280 -2.3720 2.0811 34 1 -0.3055 -4.4995 2.0705 35 1 -0.4734 -5.8194 0.0008 36 1 0.5914 -5.0214 -2.0684 37 1 1.3859 -0.3997 -2.3092 38 1 1.5374 -0.7839 -4.0406 39 1 0.1348 -1.3745 -3.1174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239775732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:27 Heat of formation + Delta-G solvation = -43.251383 kcal Electronic energy + Delta-G solvation = -24468.556092 eV Core-core repulsion = 21046.273444 eV Total energy + Delta-G solvation = -3422.282648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65663 -39.09897 -37.96832 -36.87164 -35.77832 -33.60236 -32.73672 -32.08525 -30.38121 -30.18902 -27.59797 -26.93478 -24.08749 -23.65870 -22.25538 -21.32148 -19.89552 -18.96298 -18.62013 -17.25123 -17.10474 -16.94966 -16.87265 -15.78283 -15.68554 -15.63108 -15.38999 -14.98913 -14.58338 -14.35329 -14.02895 -13.72426 -13.64429 -13.57893 -13.35174 -13.33185 -13.03177 -12.98884 -12.92941 -12.86516 -12.77788 -12.39384 -12.23230 -11.97567 -11.83293 -11.54336 -11.35465 -11.28759 -10.98244 -10.23340 -9.69679 -9.17070 -9.03899 -8.53452 -6.40759 -0.74417 -0.02929 0.38519 0.85788 1.25095 1.39487 1.47253 1.53622 2.02658 2.22311 2.58218 2.72833 2.99625 3.39776 3.65487 3.91612 3.98902 4.06857 4.17864 4.23581 4.36966 4.46241 4.48761 4.58655 4.73982 4.84074 4.90962 4.96090 4.99218 5.07317 5.15999 5.19016 5.25681 5.41707 5.46384 5.48052 5.55113 5.79174 5.92292 6.08637 6.15818 6.20861 6.43018 6.70661 6.95675 7.03847 8.37425 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.004583 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.058509 B = 6108.666089 C = 6724.745722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.045 4.045 3 C -0.182 4.182 4 C 0.093 3.907 5 C -0.496 4.496 6 H 0.071 0.929 7 C 0.034 3.966 8 N -0.829 5.829 9 Si 0.984 3.016 10 H -0.260 1.260 11 H -0.268 1.268 12 H -0.264 1.264 13 C -0.244 4.244 14 C -0.022 4.022 15 C -0.237 4.237 16 C 0.088 3.912 17 C -0.149 4.149 18 C -0.060 4.060 19 C -0.148 4.148 20 C -0.036 4.036 21 C -0.666 4.666 22 S 2.497 3.503 23 C -0.643 4.643 24 O -0.964 6.964 25 O -0.976 6.976 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.286 0.714 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 -9.198 -2.253 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.046 4.046 3 C -0.202 4.202 4 C 0.090 3.910 5 C -0.526 4.526 6 H 0.089 0.911 7 C -0.179 4.179 8 N -0.456 5.456 9 Si 0.805 3.195 10 H -0.185 1.185 11 H -0.192 1.192 12 H -0.188 1.188 13 C -0.263 4.263 14 C -0.041 4.041 15 C -0.238 4.238 16 C 0.087 3.913 17 C -0.168 4.168 18 C -0.077 4.077 19 C -0.166 4.166 20 C -0.055 4.055 21 C -0.755 4.755 22 S 2.682 3.318 23 C -0.795 4.795 24 O -0.961 6.961 25 O -0.974 6.974 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.144 0.856 34 H 0.177 0.823 35 H 0.180 0.820 36 H 0.168 0.832 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.886 -9.460 -2.560 13.229 hybrid contribution 0.360 1.204 0.793 1.486 sum -8.526 -8.256 -1.768 11.999 Atomic orbital electron populations 1.20816 0.90849 1.02345 1.02330 1.19518 0.95660 0.91585 0.97802 1.21063 0.94066 0.96954 1.08106 1.18065 0.93068 0.92561 0.87264 1.19799 1.06874 0.95975 1.29930 0.91104 1.26689 0.95708 1.02741 0.92802 1.69793 1.17016 1.32486 1.26301 0.85167 0.78985 0.76519 0.78823 1.18468 1.19221 1.18828 1.20875 0.98096 0.93079 1.14254 1.20324 0.93028 0.96398 0.94312 1.18329 0.92386 0.91170 1.21932 1.18386 0.90134 0.90765 0.92009 1.21642 0.99606 0.97898 0.97612 1.21735 0.94160 0.92454 0.99389 1.21639 1.01251 1.01670 0.92088 1.21149 0.91611 0.92396 1.00302 1.30474 1.19425 1.07561 1.17990 1.04729 0.75779 0.77066 0.74188 1.30186 1.16450 1.19608 1.13300 1.93605 1.34787 1.85438 1.82295 1.93474 1.86448 1.55883 1.61555 0.91447 0.91435 0.91014 0.86499 0.90291 0.89286 0.88404 0.85620 0.82266 0.81974 0.83178 0.85302 0.83289 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.49 9.25 71.24 0.66 -2.83 16 2 C -0.05 -1.89 3.99 -19.91 -0.08 -1.97 16 3 C -0.18 -9.02 8.25 22.47 0.19 -8.84 16 4 C 0.09 4.96 5.55 -21.28 -0.12 4.84 16 5 C -0.50 -26.63 9.02 23.39 0.21 -26.42 16 6 H 0.07 3.73 7.85 -2.91 -0.02 3.71 16 7 C 0.03 1.70 5.42 85.28 0.46 2.16 16 8 N -0.83 -41.89 10.60 21.84 0.23 -41.66 16 9 Si 0.98 37.99 29.56 68.60 2.03 40.02 16 10 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 11 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 12 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 13 C -0.24 -12.48 9.73 22.47 0.22 -12.27 16 14 C -0.02 -1.03 7.11 22.22 0.16 -0.87 16 15 C -0.24 -9.72 3.54 -19.87 -0.07 -9.79 16 16 C 0.09 2.99 3.70 -20.03 -0.07 2.92 16 17 C -0.15 -4.29 9.59 22.53 0.22 -4.08 16 18 C -0.06 -1.28 10.03 22.23 0.22 -1.05 16 19 C -0.15 -3.01 10.04 22.34 0.22 -2.79 16 20 C -0.04 -0.91 9.49 22.24 0.21 -0.70 16 21 C -0.67 -20.67 5.61 22.53 0.13 -20.54 16 22 S 2.50 80.56 5.26 -56.49 -0.30 80.26 16 23 C -0.64 -16.84 10.56 113.37 1.20 -15.64 16 24 O -0.96 -39.56 14.24 -127.65 -1.82 -41.38 16 25 O -0.98 -32.81 16.74 -127.65 -2.14 -34.94 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.07 2.07 8.11 -2.38 -0.02 2.05 16 28 H 0.07 2.01 6.88 -2.39 -0.02 1.99 16 29 H 0.12 6.04 6.15 -2.91 -0.02 6.03 16 30 H 0.29 13.10 8.30 -92.71 -0.77 12.33 16 31 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.10 4.46 7.63 -2.91 -0.02 4.44 16 33 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.15 3.39 7.21 -2.91 -0.02 3.37 16 37 H 0.13 4.09 5.05 -2.39 -0.01 4.08 16 38 H 0.15 3.18 8.14 -2.39 -0.02 3.17 16 39 H 0.16 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -67.34 332.45 2.83 -64.51 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 1.07 Total: 31.06 kcal Atomic # 6 Polarization: -101.62 SS G_CDS: 3.75 Total: -97.87 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.23 Total: -41.66 kcal Atomic # 8 Polarization: -72.36 SS G_CDS: -3.95 Total: -76.32 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 80.56 SS G_CDS: -0.30 Total: 80.26 kcal Total: -67.34 2.83 -64.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239775732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.261 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds