Wall clock time and date at job start Tue Mar 31 2020 11:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00300 * 2 1 4 4 H 1.48501 * 109.47400 * 270.00192 * 3 2 1 5 5 H 1.48503 * 109.47050 * 30.00282 * 3 2 1 6 6 H 1.48496 * 109.46995 * 150.00087 * 3 2 1 7 7 C 1.37877 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00466 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00144 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47501 * 179.97438 * 9 7 2 11 11 C 1.35880 * 117.00488 * 179.97438 * 10 9 7 12 12 C 1.38824 * 119.93819 * 180.02562 * 11 10 9 13 13 C 1.37916 * 120.06607 * 180.26008 * 12 11 10 14 14 C 1.39377 * 119.93130 * 359.49072 * 13 12 11 15 15 C 1.48364 * 120.06403 * 180.25316 * 14 13 12 16 16 C 1.39343 * 120.05871 * 129.95409 * 15 14 13 17 17 C 1.38203 * 120.22418 * 179.78989 * 16 15 14 18 18 C 1.37963 * 120.35427 * 0.46719 * 17 16 15 19 19 C 1.39748 * 120.12061 * 359.78999 * 18 17 16 20 20 C 1.47576 * 120.11278 * 179.97438 * 19 18 17 21 21 O 1.21492 * 120.00009 * 180.02562 * 20 19 18 22 22 O 1.34733 * 120.00357 * 0.02580 * 20 19 18 23 23 C 1.39397 * 120.06118 * 310.23302 * 15 14 13 24 24 F 1.35103 * 120.17869 * 359.95617 * 23 15 14 25 25 C 1.39380 * 119.86995 * 0.48650 * 14 13 12 26 26 C 1.37911 * 119.93283 * 359.76693 * 25 14 13 27 27 H 0.97001 * 119.99201 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47272 * 59.99690 * 9 7 2 29 29 H 1.09006 * 109.46620 * 300.00157 * 9 7 2 30 30 H 1.08002 * 119.96285 * 359.97438 * 12 11 10 31 31 H 1.07995 * 120.02773 * 179.72369 * 13 12 11 32 32 H 1.08001 * 119.89577 * 0.02562 * 16 15 14 33 33 H 1.07997 * 119.82885 * 180.21512 * 17 16 15 34 34 H 1.08006 * 119.94193 * 179.77067 * 18 17 16 35 35 H 0.96693 * 116.99759 * 179.97438 * 22 20 19 36 36 H 1.07997 * 120.03348 * 179.79460 * 25 14 13 37 37 H 1.08005 * 119.96526 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0017 11 6 1.6601 -4.8410 -0.0014 12 6 2.5069 -5.9411 -0.0019 13 6 1.9827 -7.2167 -0.0070 14 6 0.6011 -7.4007 -0.0007 15 6 0.0339 -8.7717 -0.0005 16 6 -0.9441 -9.1222 0.9281 17 6 -1.4779 -10.3970 0.9286 18 6 -1.0411 -11.3361 0.0173 19 6 -0.0570 -11.0020 -0.9170 20 6 0.4106 -12.0069 -1.8914 21 8 1.2665 -11.7143 -2.7024 22 8 -0.1118 -13.2488 -1.8817 23 6 0.4827 -9.7132 -0.9253 24 9 1.4342 -9.3813 -1.8252 25 6 -0.2466 -6.2944 0.0003 26 6 0.2835 -5.0212 0.0000 27 1 -0.4849 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5570 0.8897 30 1 3.5774 -5.7977 -0.0031 31 1 2.6420 -8.0719 -0.0119 32 1 -1.2891 -8.3942 1.6474 33 1 -2.2382 -10.6607 1.6489 34 1 -1.4602 -12.3315 0.0261 35 1 0.2258 -13.8721 -2.5392 36 1 -1.3175 -6.4340 0.0018 37 1 -0.3729 -4.1635 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242379839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:39 Heat of formation + Delta-G solvation = -128.928235 kcal Electronic energy + Delta-G solvation = -24421.002189 eV Core-core repulsion = 20428.791138 eV Total energy + Delta-G solvation = -3992.211051 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.03343 -40.58321 -39.68910 -38.73737 -36.72620 -36.38812 -33.07599 -32.41543 -31.22668 -30.73696 -28.68985 -27.33043 -25.16677 -23.75332 -23.15005 -22.12524 -21.32786 -20.80991 -18.37528 -18.07004 -17.44552 -17.15163 -16.64866 -16.37090 -16.21167 -15.59797 -15.41766 -15.12322 -14.97703 -14.67726 -14.46551 -14.01837 -13.82711 -13.37698 -13.16258 -12.94003 -12.74824 -12.46206 -12.26075 -12.04808 -11.88452 -11.80071 -11.34297 -11.07432 -11.01166 -10.83020 -10.63585 -10.30307 -10.20146 -9.47409 -9.33475 -9.08140 -8.73711 -8.60398 -7.48175 -6.29246 -4.33082 0.21459 0.68842 1.67705 1.74267 2.21748 2.57302 3.21922 3.26295 3.27203 3.31907 3.81811 4.08516 4.09464 4.29025 4.46346 4.55155 4.56741 4.71380 4.95124 5.08237 5.14466 5.25514 5.36800 5.55893 5.62814 5.64986 5.76440 5.85368 5.97980 6.03790 6.09279 6.29794 6.34984 6.60181 6.67693 6.73690 6.90952 7.07842 7.13872 7.52409 7.63510 7.89829 8.38535 8.78894 9.32381 10.81981 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.032723 B = 0.002371 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.460170 B =11808.469736 C =12294.876624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.914 3.086 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.525 4.525 8 H 0.071 0.929 9 C 0.191 3.809 10 O -0.313 6.313 11 C 0.168 3.832 12 C -0.168 4.168 13 C -0.056 4.056 14 C -0.131 4.131 15 C -0.064 4.064 16 C -0.047 4.047 17 C -0.142 4.142 18 C -0.043 4.043 19 C -0.168 4.168 20 C 0.526 3.474 21 O -0.500 6.500 22 O -0.512 6.512 23 C 0.169 3.831 24 F -0.107 7.107 25 C -0.054 4.054 26 C -0.214 4.214 27 H 0.268 0.732 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.416 0.584 36 H 0.122 0.878 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.928 -24.883 1.634 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.563 4.563 8 H 0.089 0.911 9 C 0.119 3.881 10 O -0.225 6.225 11 C 0.119 3.881 12 C -0.187 4.187 13 C -0.074 4.074 14 C -0.131 4.131 15 C -0.065 4.065 16 C -0.066 4.066 17 C -0.160 4.160 18 C -0.061 4.061 19 C -0.170 4.170 20 C 0.370 3.630 21 O -0.388 6.388 22 O -0.325 6.325 23 C 0.149 3.851 24 F -0.085 7.085 25 C -0.072 4.072 26 C -0.232 4.232 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.275 0.725 36 H 0.140 0.860 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.749 -24.285 1.659 24.801 hybrid contribution 0.434 0.572 -0.663 0.977 sum -4.315 -23.714 0.996 24.124 Atomic orbital electron populations 1.69947 1.06138 1.27681 1.49477 1.24940 0.95069 0.99586 0.94604 0.86231 0.79621 0.81650 0.78430 1.20245 1.20881 1.19465 1.20972 0.94312 0.88687 1.52357 0.91083 1.20703 0.88669 0.81744 0.97006 1.86138 1.39280 1.11839 1.85285 1.19422 0.91650 0.86588 0.90452 1.20353 0.99887 0.90148 1.08321 1.20834 0.93555 0.96343 0.96640 1.18173 0.93379 0.90164 1.11384 1.18793 0.98539 0.93278 0.95884 1.21513 0.92836 0.96505 0.95697 1.21156 1.01575 0.93159 1.00107 1.21347 0.92780 1.00288 0.91686 1.18981 1.04573 0.91947 1.01532 1.20584 0.78879 0.81233 0.82343 1.90981 1.30133 1.79811 1.37869 1.84520 1.65415 1.22843 1.59685 1.17758 0.87862 0.91346 0.88150 1.91617 1.60119 1.92443 1.64324 1.20861 0.98827 0.91029 0.96478 1.21412 0.94878 0.98318 1.08636 0.92282 0.95911 0.95887 0.85201 0.86040 0.83934 0.84247 0.83657 0.72548 0.86012 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.53 -14.85 9.43 -34.44 -0.32 -15.18 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.19 5.00 4.49 36.01 0.16 5.16 16 10 O -0.31 -7.49 10.12 -19.36 -0.20 -7.69 16 11 C 0.17 3.37 6.69 -39.15 -0.26 3.10 16 12 C -0.17 -2.91 9.97 -39.48 -0.39 -3.30 16 13 C -0.06 -0.85 8.85 -39.28 -0.35 -1.19 16 14 C -0.13 -1.89 5.32 -104.88 -0.56 -2.45 16 15 C -0.06 -0.77 5.47 -104.89 -0.57 -1.35 16 16 C -0.05 -0.43 9.50 -39.18 -0.37 -0.80 16 17 C -0.14 -0.99 10.01 -39.69 -0.40 -1.39 16 18 C -0.04 -0.33 9.61 -39.12 -0.38 -0.71 16 19 C -0.17 -1.82 5.87 -104.97 -0.62 -2.43 16 20 C 0.53 5.76 8.27 34.54 0.29 6.05 16 21 O -0.50 -7.26 16.12 -19.26 -0.31 -7.57 16 22 O -0.51 -3.54 12.67 -40.58 -0.51 -4.05 16 23 C 0.17 2.19 7.14 -38.60 -0.28 1.91 16 24 F -0.11 -1.66 14.15 2.25 0.03 -1.63 16 25 C -0.05 -0.81 9.50 -39.28 -0.37 -1.18 16 26 C -0.21 -3.91 9.02 -39.48 -0.36 -4.26 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.02 0.62 7.66 -51.93 -0.40 0.22 16 29 H 0.02 0.62 7.65 -51.93 -0.40 0.22 16 30 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.12 1.63 7.76 -52.49 -0.41 1.23 16 32 H 0.14 1.06 8.04 -52.49 -0.42 0.64 16 33 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.15 0.79 7.60 -52.48 -0.40 0.39 16 35 H 0.42 1.07 9.11 45.56 0.42 1.48 16 36 H 0.12 1.49 8.04 -52.49 -0.42 1.07 16 37 H 0.14 2.63 6.28 -52.48 -0.33 2.30 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -33.12 336.19 -7.83 -40.95 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -2.75 Total: 0.12 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -4.88 Total: -16.44 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.74 Total: -24.84 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.02 Total: -19.31 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.03 Total: -1.63 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.12 -7.83 -40.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242379839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.978 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds