Wall clock time and date at job start Tue Mar 31 2020 11:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38054 * 119.85807 * 2 1 4 4 C 1.39674 * 120.10574 * 179.97438 * 3 2 1 5 5 C 1.47745 * 120.08773 * 180.02562 * 4 3 2 6 6 O 1.21469 * 120.00012 * 179.97438 * 5 4 3 7 7 O 1.34709 * 120.00057 * 359.97438 * 5 4 3 8 8 C 1.39439 * 119.82525 * 0.02619 * 4 3 2 9 9 C 1.39117 * 119.71489 * 359.97438 * 8 4 3 10 10 C 1.48292 * 120.05221 * 179.97438 * 9 8 4 11 11 C 1.39297 * 120.13484 * 129.72942 * 10 9 8 12 12 C 1.37960 * 119.97242 * 180.25374 * 11 10 9 13 13 C 1.38682 * 120.24664 * 0.03883 * 12 11 10 14 14 F 1.35101 * 119.86654 * 179.97438 * 13 12 11 15 15 C 1.38334 * 120.26723 * 359.95837 * 13 12 11 16 16 C 1.38705 * 120.02912 * 0.02562 * 15 13 12 17 17 O 1.35665 * 120.12541 * 180.02562 * 16 15 13 18 18 C 1.34809 * 116.99851 * 354.40189 * 17 16 15 19 19 H 1.08003 * 119.99948 * 5.06219 * 18 17 16 20 20 C 1.38648 * 120.00027 * 185.06074 * 18 17 16 21 21 N 1.31554 * 119.99728 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99889 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47319 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46893 * 120.00061 * 22 20 18 25 25 H 1.48499 * 109.46930 * 239.99536 * 22 20 18 26 26 C 1.38110 * 119.85617 * 180.30482 * 2 1 3 27 27 H 1.09004 * 109.47105 * 89.99962 * 1 2 3 28 28 H 1.09005 * 109.47333 * 209.99318 * 1 2 3 29 29 H 1.08996 * 109.47423 * 329.99879 * 1 2 3 30 30 H 1.08006 * 119.94542 * 0.02726 * 3 2 1 31 31 H 0.96702 * 116.99817 * 180.02562 * 7 5 4 32 32 H 1.08002 * 120.14202 * 180.02562 * 8 4 3 33 33 H 1.08005 * 120.01257 * 0.24989 * 11 10 9 34 34 H 1.08000 * 119.87932 * 180.02562 * 12 11 10 35 35 H 1.08008 * 119.98426 * 180.02562 * 15 13 12 36 36 H 0.97007 * 119.99912 * 180.02562 * 21 20 18 37 37 H 1.07999 * 119.91117 * 359.97364 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1973 0.0000 4 6 3.5910 1.2033 0.0005 5 6 4.3262 2.4849 0.0011 6 8 5.5409 2.4883 0.0021 7 8 3.6494 3.6496 0.0006 8 6 4.2898 -0.0034 0.0005 9 6 3.5897 -1.2056 0.0005 10 6 4.3253 -2.4932 -0.0001 11 6 4.0039 -3.4826 0.9263 12 6 4.6938 -4.6773 0.9262 13 6 5.7084 -4.8979 0.0068 14 9 6.3794 -6.0705 0.0138 15 6 6.0359 -3.9224 -0.9177 16 6 5.3493 -2.7172 -0.9279 17 8 5.6684 -1.7593 -1.8340 18 6 6.7377 -1.9933 -2.6210 19 1 7.2476 -2.9440 -2.5705 20 6 7.1828 -1.0134 -3.4951 21 7 6.5614 0.1445 -3.5568 22 14 8.6640 -1.3379 -4.5860 23 1 9.1781 -2.7070 -4.3284 24 1 8.2643 -1.2198 -6.0114 25 1 9.7267 -0.3449 -4.2861 26 6 2.1946 -1.1978 -0.0064 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8901 0.5137 29 1 -0.3634 0.8899 0.5138 30 1 1.6511 2.1308 0.0004 31 1 4.1739 4.4621 0.0006 32 1 5.3698 -0.0047 0.0014 33 1 3.2149 -3.3145 1.6445 34 1 4.4431 -5.4435 1.6448 35 1 6.8265 -4.0992 -1.6320 36 1 6.8725 0.8299 -4.1687 37 1 1.6508 -2.1309 -0.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243182776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:06 Heat of formation + Delta-G solvation = -120.999764 kcal Electronic energy + Delta-G solvation = -25574.858422 eV Core-core repulsion = 21582.991175 eV Total energy + Delta-G solvation = -3991.867247 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.35965 -40.13049 -39.34749 -38.20532 -36.39655 -35.76614 -32.90314 -32.39689 -31.86563 -29.47644 -28.30698 -26.66186 -25.53149 -24.40290 -22.86298 -21.91104 -20.47556 -20.10620 -18.35498 -17.81458 -17.39156 -16.83351 -15.67731 -15.63563 -15.29847 -15.26242 -15.09226 -15.01920 -14.61234 -14.28391 -13.66478 -13.55929 -13.51618 -13.34504 -13.12111 -12.82961 -12.49779 -12.14043 -11.98719 -11.77225 -11.62805 -11.34920 -11.24618 -11.18196 -10.88549 -10.74539 -10.67549 -10.49367 -10.21027 -9.65836 -8.97692 -8.80728 -8.44598 -7.98923 -7.32065 -6.57471 -4.16710 1.04561 1.46553 2.01449 2.08393 2.93036 3.07183 3.09287 3.14869 3.30405 3.85904 4.05958 4.31867 4.78665 4.93961 4.95881 5.01209 5.10890 5.23366 5.42891 5.48577 5.56272 5.67254 5.67993 5.70268 5.79954 5.93046 6.01648 6.17212 6.26474 6.36336 6.55567 6.66405 6.73023 6.77075 6.82238 6.84912 6.88924 7.05336 7.18600 7.28688 7.56167 7.83813 8.21980 8.85873 9.47679 10.57510 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.008771 B = 0.006133 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.727816 B = 4564.491595 C = 6978.734507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C -0.074 4.074 4 C -0.121 4.121 5 C 0.525 3.475 6 O -0.501 6.501 7 O -0.519 6.519 8 C -0.017 4.017 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.030 4.030 12 C -0.251 4.251 13 C 0.147 3.853 14 F -0.151 7.151 15 C -0.270 4.270 16 C 0.185 3.815 17 O -0.151 6.151 18 C -0.400 4.400 19 H 0.095 0.905 20 C 0.046 3.954 21 N -0.842 5.842 22 Si 0.941 3.059 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.274 1.274 26 C -0.080 4.080 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.408 0.592 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.272 0.728 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.284 0.881 7.033 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.110 4.110 3 C -0.092 4.092 4 C -0.123 4.123 5 C 0.369 3.631 6 O -0.388 6.388 7 O -0.331 6.331 8 C -0.035 4.035 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.049 4.049 12 C -0.270 4.270 13 C 0.128 3.872 14 F -0.129 7.129 15 C -0.291 4.291 16 C 0.128 3.872 17 O -0.051 6.051 18 C -0.475 4.475 19 H 0.113 0.887 20 C -0.161 4.161 21 N -0.474 5.474 22 Si 0.765 3.235 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.098 4.098 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.266 0.734 32 H 0.159 0.841 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.159 0.841 36 H 0.082 0.918 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.224 0.949 6.814 11.507 hybrid contribution 1.409 0.100 -0.741 1.595 sum -7.815 1.049 6.073 9.953 Atomic orbital electron populations 1.20724 0.90969 1.02460 1.02269 1.19666 0.96035 0.92685 1.02601 1.21178 0.92522 0.98047 0.97498 1.18847 0.93367 0.90041 1.10003 1.20956 0.85696 0.84106 0.72347 1.90927 1.14933 1.87808 1.45178 1.84544 1.45111 1.16921 1.86496 1.21395 1.01223 0.89524 0.91373 1.18416 0.92234 0.91889 0.99302 1.17766 1.01539 0.95022 1.00523 1.20507 0.97302 0.91141 0.95915 1.20438 1.02070 1.00220 1.04314 1.17537 0.92108 0.81050 0.96506 1.91421 1.79384 1.46098 1.96035 1.20989 1.08014 0.94940 1.05109 1.18958 0.91691 0.88193 0.88355 1.83994 1.43567 1.37632 1.39944 1.21437 1.05872 1.02215 1.17968 0.88718 1.25322 0.98863 0.94423 0.97476 1.70052 1.38467 1.04178 1.34671 0.85643 0.79697 0.78996 0.79137 1.18922 1.19998 1.19919 1.21315 0.93160 0.97578 0.97758 0.91316 0.91643 0.91709 0.85169 0.73381 0.84108 0.85710 0.86090 0.84105 0.91763 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.00 36.01 0.36 -0.73 16 2 C -0.11 -1.55 5.87 -104.74 -0.61 -2.16 16 3 C -0.07 -1.13 9.26 -39.11 -0.36 -1.49 16 4 C -0.12 -2.24 5.87 -105.03 -0.62 -2.85 16 5 C 0.53 9.56 8.27 34.62 0.29 9.85 16 6 O -0.50 -10.97 17.13 -19.24 -0.33 -11.30 16 7 O -0.52 -6.98 12.67 -40.52 -0.51 -7.50 16 8 C -0.02 -0.35 8.32 -38.81 -0.32 -0.67 16 9 C -0.02 -0.35 5.27 -104.96 -0.55 -0.90 16 10 C -0.15 -2.91 5.48 -104.71 -0.57 -3.49 16 11 C -0.03 -0.51 9.51 -39.29 -0.37 -0.88 16 12 C -0.25 -4.23 10.01 -39.52 -0.40 -4.63 16 13 C 0.15 2.83 7.30 -39.38 -0.29 2.54 16 14 F -0.15 -2.79 17.26 2.25 0.04 -2.75 16 15 C -0.27 -5.83 9.14 -39.37 -0.36 -6.19 16 16 C 0.18 4.25 6.55 -38.75 -0.25 4.00 16 17 O -0.15 -4.03 8.11 0.37 0.00 -4.03 16 18 C -0.40 -10.73 9.49 30.88 0.29 -10.44 16 19 H 0.10 2.38 5.21 -52.48 -0.27 2.11 16 20 C 0.05 1.23 5.49 -17.52 -0.10 1.14 16 21 N -0.84 -23.96 13.67 55.48 0.76 -23.20 16 22 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C -0.08 -1.25 9.16 -39.15 -0.36 -1.61 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.13 1.67 7.60 -52.48 -0.40 1.27 16 31 H 0.41 3.58 9.11 45.56 0.42 3.99 16 32 H 0.14 3.34 7.28 -52.49 -0.38 2.96 16 33 H 0.13 1.66 8.05 -52.48 -0.42 1.24 16 34 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.14 3.07 5.64 -52.48 -0.30 2.78 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.13 1.67 8.05 -52.49 -0.42 1.25 16 LS Contribution 336.30 15.07 5.07 5.07 Total: -1.00 -31.79 336.30 -6.83 -38.62 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -2.60 Total: 8.40 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -4.23 Total: -18.51 kcal Atomic # 7 Polarization: -23.96 SS G_CDS: 0.76 Total: -23.20 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.84 Total: -22.82 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.79 -6.83 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243182776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.384 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds