Wall clock time and date at job start Tue Mar 31 2020 11:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38054 * 119.85807 * 2 1 4 4 C 1.39674 * 120.10574 * 179.97438 * 3 2 1 5 5 C 1.47745 * 120.08773 * 180.02562 * 4 3 2 6 6 O 1.21469 * 120.00012 * 179.97438 * 5 4 3 7 7 O 1.34709 * 120.00057 * 359.97438 * 5 4 3 8 8 C 1.39439 * 119.82525 * 0.02619 * 4 3 2 9 9 C 1.39117 * 119.71489 * 359.97438 * 8 4 3 10 10 C 1.48292 * 120.05221 * 179.97438 * 9 8 4 11 11 C 1.39297 * 120.13484 * 129.72942 * 10 9 8 12 12 C 1.37960 * 119.97242 * 180.25374 * 11 10 9 13 13 C 1.38682 * 120.24664 * 0.03883 * 12 11 10 14 14 F 1.35101 * 119.86654 * 179.97438 * 13 12 11 15 15 C 1.38334 * 120.26723 * 359.95837 * 13 12 11 16 16 C 1.38705 * 120.02912 * 0.02562 * 15 13 12 17 17 O 1.35665 * 120.12541 * 180.02562 * 16 15 13 18 18 C 1.34809 * 116.99851 * 354.40189 * 17 16 15 19 19 H 1.08003 * 119.99948 * 5.06219 * 18 17 16 20 20 C 1.38648 * 120.00027 * 185.06074 * 18 17 16 21 21 N 1.31554 * 119.99728 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99889 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47319 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46893 * 120.00061 * 22 20 18 25 25 H 1.48499 * 109.46930 * 239.99536 * 22 20 18 26 26 C 1.38110 * 119.85617 * 180.30482 * 2 1 3 27 27 H 1.09004 * 109.47105 * 89.99962 * 1 2 3 28 28 H 1.09005 * 109.47333 * 209.99318 * 1 2 3 29 29 H 1.08996 * 109.47423 * 329.99879 * 1 2 3 30 30 H 1.08006 * 119.94542 * 0.02726 * 3 2 1 31 31 H 0.96702 * 116.99817 * 180.02562 * 7 5 4 32 32 H 1.08002 * 120.14202 * 180.02562 * 8 4 3 33 33 H 1.08005 * 120.01257 * 0.24989 * 11 10 9 34 34 H 1.08000 * 119.87932 * 180.02562 * 12 11 10 35 35 H 1.08008 * 119.98426 * 180.02562 * 15 13 12 36 36 H 0.97007 * 119.99912 * 180.02562 * 21 20 18 37 37 H 1.07999 * 119.91117 * 359.97364 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1973 0.0000 4 6 3.5910 1.2033 0.0005 5 6 4.3262 2.4849 0.0011 6 8 5.5409 2.4883 0.0021 7 8 3.6494 3.6496 0.0006 8 6 4.2898 -0.0034 0.0005 9 6 3.5897 -1.2056 0.0005 10 6 4.3253 -2.4932 -0.0001 11 6 4.0039 -3.4826 0.9263 12 6 4.6938 -4.6773 0.9262 13 6 5.7084 -4.8979 0.0068 14 9 6.3794 -6.0705 0.0138 15 6 6.0359 -3.9224 -0.9177 16 6 5.3493 -2.7172 -0.9279 17 8 5.6684 -1.7593 -1.8340 18 6 6.7377 -1.9933 -2.6210 19 1 7.2476 -2.9440 -2.5705 20 6 7.1828 -1.0134 -3.4951 21 7 6.5614 0.1445 -3.5568 22 14 8.6640 -1.3379 -4.5860 23 1 9.1781 -2.7070 -4.3284 24 1 8.2643 -1.2198 -6.0114 25 1 9.7267 -0.3449 -4.2861 26 6 2.1946 -1.1978 -0.0064 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8901 0.5137 29 1 -0.3634 0.8899 0.5138 30 1 1.6511 2.1308 0.0004 31 1 4.1739 4.4621 0.0006 32 1 5.3698 -0.0047 0.0014 33 1 3.2149 -3.3145 1.6445 34 1 4.4431 -5.4435 1.6448 35 1 6.8265 -4.0992 -1.6320 36 1 6.8725 0.8299 -4.1687 37 1 1.6508 -2.1309 -0.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243182776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:05 Heat of formation + Delta-G solvation = -140.486355 kcal Electronic energy + Delta-G solvation = -25575.703424 eV Core-core repulsion = 21582.991175 eV Total energy + Delta-G solvation = -3992.712249 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.88706 -41.54295 -40.92613 -39.61649 -38.02890 -37.11696 -34.41495 -34.06761 -33.23193 -31.06157 -29.78688 -27.75179 -27.41272 -25.75981 -24.33136 -23.53372 -21.90871 -21.39464 -20.13050 -19.33497 -18.93202 -18.23303 -17.24867 -17.00098 -16.93610 -16.68346 -16.62987 -16.49421 -16.02282 -15.95325 -15.36874 -15.15804 -14.87008 -14.54604 -14.44208 -14.11120 -14.05393 -13.57550 -13.26064 -13.13137 -12.92835 -12.86258 -12.60948 -12.58441 -12.38753 -12.28124 -12.16025 -12.08608 -11.65210 -11.46805 -10.87201 -10.23121 -9.74111 -9.52131 -8.91750 -8.52565 -6.20704 -0.31032 -0.01295 0.50510 0.62408 1.29816 1.37488 1.47295 1.53639 2.03236 2.10233 2.58538 2.82387 3.04842 3.21944 3.43967 3.66456 3.85494 3.95994 4.07620 4.17782 4.20380 4.34405 4.40028 4.48445 4.67713 4.79785 4.87865 4.96338 4.98439 5.02978 5.13103 5.24839 5.29586 5.33243 5.40052 5.40932 5.55013 5.57172 5.66202 5.89662 5.97424 6.03292 6.90398 6.95294 7.64435 8.67048 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.008771 B = 0.006133 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.727816 B = 4564.491595 C = 6978.734507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C -0.063 4.063 4 C -0.143 4.143 5 C 0.528 3.472 6 O -0.553 6.553 7 O -0.497 6.497 8 C -0.049 4.049 9 C -0.040 4.040 10 C -0.147 4.147 11 C -0.018 4.018 12 C -0.218 4.218 13 C 0.138 3.862 14 F -0.146 7.146 15 C -0.287 4.287 16 C 0.153 3.847 17 O -0.197 6.197 18 C -0.420 4.420 19 H 0.099 0.901 20 C -0.012 4.012 21 N -0.899 5.899 22 Si 1.011 2.989 23 H -0.253 1.253 24 H -0.265 1.265 25 H -0.272 1.272 26 C -0.071 4.071 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.161 0.839 31 H 0.430 0.570 32 H 0.088 0.912 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.125 0.875 36 H 0.271 0.729 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 -0.501 8.860 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.098 4.098 3 C -0.081 4.081 4 C -0.144 4.144 5 C 0.374 3.626 6 O -0.445 6.445 7 O -0.310 6.310 8 C -0.067 4.067 9 C -0.040 4.040 10 C -0.149 4.149 11 C -0.036 4.036 12 C -0.237 4.237 13 C 0.118 3.882 14 F -0.125 7.125 15 C -0.307 4.307 16 C 0.100 3.900 17 O -0.101 6.101 18 C -0.496 4.496 19 H 0.116 0.884 20 C -0.212 4.212 21 N -0.535 5.535 22 Si 0.831 3.169 23 H -0.177 1.177 24 H -0.189 1.189 25 H -0.197 1.197 26 C -0.089 4.089 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.178 0.822 31 H 0.292 0.708 32 H 0.107 0.893 33 H 0.192 0.808 34 H 0.183 0.817 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.816 -0.459 8.683 15.487 hybrid contribution 2.269 0.402 -1.014 2.518 sum -10.547 -0.057 7.669 13.040 Atomic orbital electron populations 1.20839 0.87154 1.04697 1.03472 1.20202 0.98490 0.91431 0.99677 1.21551 0.90841 1.00121 0.95551 1.19008 0.95030 0.89251 1.11139 1.21095 0.85041 0.85330 0.71097 1.90906 1.17171 1.88618 1.47834 1.84472 1.44467 1.16690 1.85395 1.21102 0.99025 0.91854 0.94742 1.18513 0.93903 0.90631 1.00972 1.18244 1.00337 0.96390 0.99889 1.21050 0.97743 0.89707 0.95061 1.20997 0.99180 1.00835 1.02718 1.17662 0.93044 0.80743 0.96709 1.91434 1.79469 1.45548 1.96003 1.21019 1.08060 0.95637 1.06031 1.19572 0.93096 0.88203 0.89123 1.83996 1.44569 1.39443 1.42079 1.21797 1.06668 1.02613 1.18548 0.88416 1.26464 1.01820 0.94012 0.98875 1.70202 1.41052 1.05519 1.36700 0.84634 0.75784 0.79213 0.77274 1.17670 1.18940 1.19669 1.21659 0.91409 0.99772 0.96033 0.90399 0.89433 0.89635 0.82171 0.70818 0.89339 0.80811 0.81670 0.85717 0.91979 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.00 71.24 0.71 -0.84 16 2 C -0.10 -2.41 5.87 -19.94 -0.12 -2.52 16 3 C -0.06 -1.77 9.26 22.57 0.21 -1.56 16 4 C -0.14 -5.43 5.87 -20.13 -0.12 -5.55 16 5 C 0.53 20.15 8.27 70.34 0.58 20.73 16 6 O -0.55 -26.35 17.13 19.94 0.34 -26.01 16 7 O -0.50 -13.00 12.67 -56.18 -0.71 -13.71 16 8 C -0.05 -2.15 8.32 22.77 0.19 -1.96 16 9 C -0.04 -1.53 5.27 -20.08 -0.11 -1.64 16 10 C -0.15 -5.83 5.48 -19.92 -0.11 -5.94 16 11 C -0.02 -0.53 9.51 22.46 0.21 -0.32 16 12 C -0.22 -6.48 10.01 22.31 0.22 -6.25 16 13 C 0.14 5.11 7.30 22.40 0.16 5.27 16 14 F -0.15 -5.18 17.26 44.97 0.78 -4.40 16 15 C -0.29 -12.88 9.14 22.40 0.20 -12.67 16 16 C 0.15 7.44 6.55 22.81 0.15 7.59 16 17 O -0.20 -11.47 8.11 -21.59 -0.18 -11.65 16 18 C -0.42 -24.50 9.49 67.92 0.64 -23.86 16 19 H 0.10 5.34 5.21 -2.91 -0.02 5.33 16 20 C -0.01 -0.67 5.49 84.83 0.47 -0.20 16 21 N -0.90 -55.46 13.67 21.61 0.30 -55.17 16 22 Si 1.01 44.01 29.55 68.60 2.03 46.04 16 23 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 C -0.07 -2.01 9.16 22.55 0.21 -1.80 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 0.97 8.08 -2.38 -0.02 0.95 16 29 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.16 3.51 7.60 -2.91 -0.02 3.49 16 31 H 0.43 7.17 9.11 -74.06 -0.67 6.49 16 32 H 0.09 4.78 7.28 -2.91 -0.02 4.75 16 33 H 0.17 3.52 8.05 -2.91 -0.02 3.50 16 34 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.13 5.86 5.64 -2.91 -0.02 5.84 16 36 H 0.27 15.52 8.31 -92.70 -0.77 14.74 16 37 H 0.16 3.39 8.05 -2.91 -0.02 3.37 16 Total: -1.00 -79.58 336.30 6.54 -73.04 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.47 Total: 23.39 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.51 Total: -31.53 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.30 Total: -55.17 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -0.55 Total: -51.37 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.78 Total: -4.40 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -79.58 6.54 -73.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243182776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.446 kcal (2) G-P(sol) polarization free energy of solvation -79.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds