Wall clock time and date at job start Tue Mar 31 2020 11:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37645 * 120.05122 * 2 1 4 4 C 1.39818 * 119.85083 * 179.97438 * 3 2 1 5 5 C 1.47520 * 120.02152 * 179.97438 * 4 3 2 6 6 O 1.21500 * 120.00387 * 0.02562 * 5 4 3 7 7 O 1.34749 * 119.99338 * 179.97438 * 5 4 3 8 8 C 1.39812 * 119.95057 * 359.97438 * 4 3 2 9 9 C 1.36581 * 120.10372 * 359.71815 * 8 4 3 10 10 C 1.39617 * 120.05080 * 179.97438 * 2 1 3 11 11 C 1.48084 * 119.97626 * 0.02562 * 10 2 1 12 12 C 1.39419 * 120.14613 * 244.99870 * 11 10 2 13 13 C 1.37899 * 119.96459 * 180.02562 * 12 11 10 14 14 C 1.38728 * 120.26000 * 0.02562 * 13 12 11 15 15 F 1.35096 * 119.85566 * 179.97438 * 14 13 12 16 16 C 1.38339 * 120.29289 * 359.97438 * 14 13 12 17 17 C 1.38713 * 120.02988 * 359.72589 * 16 14 13 18 18 O 1.35624 * 120.13026 * 180.30165 * 17 16 14 19 19 C 1.34805 * 116.99898 * 354.39133 * 18 17 16 20 20 H 1.07999 * 120.00377 * 5.08971 * 19 18 17 21 21 C 1.38670 * 120.00133 * 185.08264 * 19 18 17 22 22 N 1.31545 * 120.00189 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99714 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47276 * 90.00274 * 23 21 19 25 25 H 1.48507 * 109.47128 * 209.99938 * 23 21 19 26 26 H 1.48496 * 109.47545 * 329.99771 * 23 21 19 27 27 H 1.09006 * 109.47227 * 270.02884 * 1 2 3 28 28 H 1.08998 * 109.46643 * 30.02766 * 1 2 3 29 29 H 1.08995 * 109.46868 * 150.02478 * 1 2 3 30 30 H 1.07997 * 120.07269 * 359.94842 * 3 2 1 31 31 H 0.96703 * 116.99320 * 179.97438 * 7 5 4 32 32 H 1.08001 * 119.95122 * 180.02562 * 8 4 3 33 33 H 1.07997 * 119.92701 * 180.27498 * 9 8 4 34 34 H 1.08002 * 120.01796 * 0.02722 * 12 11 10 35 35 H 1.08001 * 119.86695 * 180.02562 * 13 12 11 36 36 H 1.07999 * 119.98665 * 179.97438 * 16 14 13 37 37 H 0.97002 * 120.00046 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1914 0.0000 4 6 3.5945 1.1865 0.0005 5 6 4.3370 2.4612 0.0000 6 8 3.7337 3.5158 -0.0005 7 8 5.6845 2.4558 0.0010 8 6 4.2883 -0.0273 0.0016 9 6 3.6024 -1.2084 0.0080 10 6 2.2062 -1.2085 0.0005 11 6 1.4664 -2.4913 0.0005 12 6 1.5576 -3.3521 1.0934 13 6 0.8675 -4.5460 1.0892 14 6 0.0819 -4.8956 0.0006 15 9 -0.5903 -6.0674 0.0049 16 6 -0.0163 -4.0495 -1.0895 17 6 0.6678 -2.8428 -1.0954 18 8 0.5681 -2.0090 -2.1604 19 6 -0.1170 -2.4611 -3.2297 20 1 -0.6259 -3.4125 -3.1821 21 6 -0.1686 -1.7046 -4.3907 22 7 -0.8376 -2.1456 -5.4339 23 14 0.7119 -0.0593 -4.4732 24 1 2.0985 -0.2639 -4.9638 25 1 -0.0135 0.8444 -5.4020 26 1 0.7507 0.5499 -3.1195 27 1 -0.3634 0.0005 1.0277 28 1 -0.3632 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6584 2.1279 -0.0008 31 1 6.1269 3.3158 0.0002 32 1 5.3683 -0.0311 0.0025 33 1 4.1412 -2.1443 0.0133 34 1 2.1683 -3.0841 1.9429 35 1 0.9389 -5.2115 1.9369 36 1 -0.6290 -4.3267 -1.9345 37 1 -0.8740 -1.6162 -6.2459 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243203750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:22 Heat of formation + Delta-G solvation = -116.929536 kcal Electronic energy + Delta-G solvation = -25771.077554 eV Core-core repulsion = 21779.386805 eV Total energy + Delta-G solvation = -3991.690748 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.45361 -40.47930 -39.75839 -38.37850 -36.60902 -36.11214 -33.03081 -32.55015 -31.94869 -29.75383 -28.82841 -26.78573 -25.54073 -24.58603 -22.21538 -21.72735 -21.50877 -20.42188 -18.30085 -18.00236 -17.83101 -17.15358 -16.24057 -15.74306 -15.62890 -15.45555 -15.33610 -14.98138 -14.27787 -14.16066 -14.00764 -13.96358 -13.58735 -13.38981 -13.14825 -13.04742 -12.60204 -12.42109 -12.14058 -11.88332 -11.65455 -11.53382 -11.39086 -11.13811 -11.00782 -10.88989 -10.75737 -10.58004 -10.37097 -9.72144 -9.06130 -8.88025 -8.61291 -8.20167 -7.60269 -6.61606 -4.29350 0.69863 1.55263 1.62794 1.89916 2.59464 2.99412 3.12110 3.17653 3.31743 3.85429 4.06547 4.08743 4.44112 4.76898 4.88145 4.88767 4.94640 5.03671 5.17719 5.34910 5.38912 5.53511 5.56946 5.80253 5.89079 5.96613 6.02557 6.08651 6.12175 6.27754 6.38138 6.42228 6.54184 6.58121 6.65805 6.71149 6.78350 6.89510 7.03430 7.32024 7.54742 7.79116 7.84658 8.71734 9.27171 10.44435 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.010900 B = 0.005670 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.303164 B = 4936.803574 C = 6870.003205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 C -0.053 4.053 4 C -0.143 4.143 5 C 0.530 3.470 6 O -0.520 6.520 7 O -0.514 6.514 8 C -0.068 4.068 9 C -0.123 4.123 10 C 0.031 3.969 11 C -0.153 4.153 12 C -0.029 4.029 13 C -0.241 4.241 14 C 0.148 3.852 15 F -0.147 7.147 16 C -0.259 4.259 17 C 0.196 3.804 18 O -0.189 6.189 19 C -0.396 4.396 20 H 0.110 0.890 21 C 0.073 3.927 22 N -0.865 5.865 23 Si 0.894 3.106 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.250 1.250 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.410 0.590 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.148 0.852 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 3.228 11.782 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 C -0.071 4.071 4 C -0.145 4.145 5 C 0.376 3.624 6 O -0.411 6.411 7 O -0.325 6.325 8 C -0.086 4.086 9 C -0.141 4.141 10 C 0.031 3.969 11 C -0.155 4.155 12 C -0.047 4.047 13 C -0.261 4.261 14 C 0.129 3.871 15 F -0.126 7.126 16 C -0.279 4.279 17 C 0.142 3.858 18 O -0.092 6.092 19 C -0.471 4.471 20 H 0.127 0.873 21 C -0.133 4.133 22 N -0.501 5.501 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.174 1.174 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.152 0.848 31 H 0.268 0.732 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.166 0.834 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.124 3.371 11.460 14.446 hybrid contribution 0.421 0.892 -0.433 1.078 sum 8.546 4.263 11.027 14.587 Atomic orbital electron populations 1.20911 0.90228 1.04500 1.01880 1.19956 0.96851 0.91428 0.99059 1.21050 0.91871 0.98541 0.95641 1.18943 0.93152 0.90397 1.11959 1.20971 0.80160 0.89613 0.71690 1.90874 1.69689 1.33617 1.46884 1.84586 1.21255 1.40627 1.86041 1.20993 1.00213 0.91099 0.96307 1.20973 0.93187 0.98277 1.01684 1.18802 0.92516 0.91857 0.93730 1.17807 1.05123 0.96597 0.95932 1.20498 0.96590 0.91730 0.95910 1.20517 1.05745 1.00273 0.99564 1.17564 0.92892 0.81541 0.95100 1.91442 1.78507 1.45796 1.96848 1.21119 1.09167 0.96720 1.00927 1.18620 0.91414 0.88120 0.87687 1.83624 1.65305 1.38616 1.21659 1.20812 1.29789 1.07737 0.88718 0.87285 1.24451 0.96034 0.99280 0.93503 1.69628 1.38648 1.38707 1.03108 0.86328 0.79749 0.82186 0.79832 1.19684 1.20538 1.17382 0.91413 0.91648 0.89439 0.84765 0.73158 0.84785 0.85034 0.85500 0.85813 0.83428 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.43 36.01 0.34 -1.62 16 2 C -0.07 -1.23 5.68 -104.32 -0.59 -1.82 16 3 C -0.05 -0.85 9.24 -39.21 -0.36 -1.21 16 4 C -0.14 -2.15 5.88 -104.93 -0.62 -2.76 16 5 C 0.53 7.44 8.26 34.51 0.29 7.72 16 6 O -0.52 -8.58 17.12 -19.27 -0.33 -8.91 16 7 O -0.51 -5.27 12.66 -40.62 -0.51 -5.79 16 8 C -0.07 -0.92 9.55 -39.59 -0.38 -1.30 16 9 C -0.12 -1.78 9.66 -39.66 -0.38 -2.16 16 10 C 0.03 0.52 4.96 -104.83 -0.52 0.00 16 11 C -0.15 -2.67 4.63 -104.72 -0.48 -3.16 16 12 C -0.03 -0.43 9.72 -39.27 -0.38 -0.81 16 13 C -0.24 -3.70 10.01 -39.52 -0.40 -4.09 16 14 C 0.15 2.65 7.30 -39.36 -0.29 2.36 16 15 F -0.15 -2.61 17.26 2.25 0.04 -2.57 16 16 C -0.26 -5.22 9.14 -39.37 -0.36 -5.58 16 17 C 0.20 4.04 5.24 -38.71 -0.20 3.84 16 18 O -0.19 -4.45 6.49 0.51 0.00 -4.44 16 19 C -0.40 -10.26 9.95 30.89 0.31 -9.95 16 20 H 0.11 2.92 5.44 -52.49 -0.29 2.63 16 21 C 0.07 1.93 5.49 -17.51 -0.10 1.84 16 22 N -0.87 -23.74 13.96 55.48 0.77 -22.97 16 23 Si 0.89 20.75 28.62 -169.99 -4.86 15.88 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.25 -5.75 7.11 56.52 0.40 -5.35 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 29 H 0.09 1.65 4.64 -51.93 -0.24 1.41 16 30 H 0.13 2.06 7.64 -52.49 -0.40 1.66 16 31 H 0.41 2.24 9.11 45.56 0.42 2.66 16 32 H 0.13 1.49 7.59 -52.49 -0.40 1.09 16 33 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.15 3.17 5.64 -52.49 -0.30 2.87 16 37 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -29.45 330.32 -6.49 -35.94 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -2.45 Total: 6.59 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -4.13 Total: -18.71 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.77 Total: -22.97 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.84 Total: -19.14 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.86 Total: 15.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.45 -6.49 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243203750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.989 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds