Wall clock time and date at job start Tue Mar 31 2020 11:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37645 * 120.05122 * 2 1 4 4 C 1.39818 * 119.85083 * 179.97438 * 3 2 1 5 5 C 1.47520 * 120.02152 * 179.97438 * 4 3 2 6 6 O 1.21500 * 120.00387 * 0.02562 * 5 4 3 7 7 O 1.34749 * 119.99338 * 179.97438 * 5 4 3 8 8 C 1.39812 * 119.95057 * 359.97438 * 4 3 2 9 9 C 1.36581 * 120.10372 * 359.71815 * 8 4 3 10 10 C 1.39617 * 120.05080 * 179.97438 * 2 1 3 11 11 C 1.48084 * 119.97626 * 0.02562 * 10 2 1 12 12 C 1.39419 * 120.14613 * 244.99870 * 11 10 2 13 13 C 1.37899 * 119.96459 * 180.02562 * 12 11 10 14 14 C 1.38728 * 120.26000 * 0.02562 * 13 12 11 15 15 F 1.35096 * 119.85566 * 179.97438 * 14 13 12 16 16 C 1.38339 * 120.29289 * 359.97438 * 14 13 12 17 17 C 1.38713 * 120.02988 * 359.72589 * 16 14 13 18 18 O 1.35624 * 120.13026 * 180.30165 * 17 16 14 19 19 C 1.34805 * 116.99898 * 354.39133 * 18 17 16 20 20 H 1.07999 * 120.00377 * 5.08971 * 19 18 17 21 21 C 1.38670 * 120.00133 * 185.08264 * 19 18 17 22 22 N 1.31545 * 120.00189 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99714 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47276 * 90.00274 * 23 21 19 25 25 H 1.48507 * 109.47128 * 209.99938 * 23 21 19 26 26 H 1.48496 * 109.47545 * 329.99771 * 23 21 19 27 27 H 1.09006 * 109.47227 * 270.02884 * 1 2 3 28 28 H 1.08998 * 109.46643 * 30.02766 * 1 2 3 29 29 H 1.08995 * 109.46868 * 150.02478 * 1 2 3 30 30 H 1.07997 * 120.07269 * 359.94842 * 3 2 1 31 31 H 0.96703 * 116.99320 * 179.97438 * 7 5 4 32 32 H 1.08001 * 119.95122 * 180.02562 * 8 4 3 33 33 H 1.07997 * 119.92701 * 180.27498 * 9 8 4 34 34 H 1.08002 * 120.01796 * 0.02722 * 12 11 10 35 35 H 1.08001 * 119.86695 * 180.02562 * 13 12 11 36 36 H 1.07999 * 119.98665 * 179.97438 * 16 14 13 37 37 H 0.97002 * 120.00046 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1914 0.0000 4 6 3.5945 1.1865 0.0005 5 6 4.3370 2.4612 0.0000 6 8 3.7337 3.5158 -0.0005 7 8 5.6845 2.4558 0.0010 8 6 4.2883 -0.0273 0.0016 9 6 3.6024 -1.2084 0.0080 10 6 2.2062 -1.2085 0.0005 11 6 1.4664 -2.4913 0.0005 12 6 1.5576 -3.3521 1.0934 13 6 0.8675 -4.5460 1.0892 14 6 0.0819 -4.8956 0.0006 15 9 -0.5903 -6.0674 0.0049 16 6 -0.0163 -4.0495 -1.0895 17 6 0.6678 -2.8428 -1.0954 18 8 0.5681 -2.0090 -2.1604 19 6 -0.1170 -2.4611 -3.2297 20 1 -0.6259 -3.4125 -3.1821 21 6 -0.1686 -1.7046 -4.3907 22 7 -0.8376 -2.1456 -5.4339 23 14 0.7119 -0.0593 -4.4732 24 1 2.0985 -0.2639 -4.9638 25 1 -0.0135 0.8444 -5.4020 26 1 0.7507 0.5499 -3.1195 27 1 -0.3634 0.0005 1.0277 28 1 -0.3632 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6584 2.1279 -0.0008 31 1 6.1269 3.3158 0.0002 32 1 5.3683 -0.0311 0.0025 33 1 4.1412 -2.1443 0.0133 34 1 2.1683 -3.0841 1.9429 35 1 0.9389 -5.2115 1.9369 36 1 -0.6290 -4.3267 -1.9345 37 1 -0.8740 -1.6162 -6.2459 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243203750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:21 Heat of formation + Delta-G solvation = -133.317791 kcal Electronic energy + Delta-G solvation = -25771.788202 eV Core-core repulsion = 21779.386805 eV Total energy + Delta-G solvation = -3992.401396 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.89023 -41.65724 -41.09110 -39.66070 -38.09585 -37.09581 -34.56840 -34.13462 -33.19660 -31.20096 -30.17661 -28.04061 -27.32105 -25.79271 -23.62445 -23.07551 -22.73413 -21.59323 -20.05489 -19.47569 -18.95171 -18.25279 -17.54044 -17.28794 -16.98893 -16.76973 -16.66238 -16.30444 -15.89570 -15.53735 -15.47716 -15.25459 -15.05665 -14.64295 -14.48530 -14.21395 -14.20675 -13.83152 -13.61331 -13.11554 -13.03321 -12.92308 -12.58857 -12.49641 -12.47986 -12.34167 -12.13160 -12.00424 -11.71904 -11.54073 -10.96175 -10.11555 -9.81893 -9.60583 -9.07355 -8.56324 -6.28067 -0.47980 0.22007 0.40911 0.47611 1.28185 1.29475 1.47370 1.48515 2.04779 2.20958 2.54919 2.74075 2.84885 3.00197 3.34056 3.63092 3.80006 3.91047 3.97694 4.14112 4.19524 4.22827 4.33974 4.44342 4.66575 4.75054 4.76441 4.78519 4.93184 5.04742 5.22212 5.23778 5.24722 5.29810 5.31827 5.42284 5.53361 5.57872 5.67433 5.79332 5.86752 6.06531 6.78371 6.95602 7.47011 8.54699 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.010900 B = 0.005670 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.303164 B = 4936.803574 C = 6870.003205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.087 4.087 3 C -0.066 4.066 4 C -0.150 4.150 5 C 0.537 3.463 6 O -0.551 6.551 7 O -0.499 6.499 8 C -0.057 4.057 9 C -0.118 4.118 10 C 0.007 3.993 11 C -0.139 4.139 12 C -0.016 4.016 13 C -0.209 4.209 14 C 0.135 3.865 15 F -0.148 7.148 16 C -0.279 4.279 17 C 0.174 3.826 18 O -0.211 6.211 19 C -0.396 4.396 20 H 0.083 0.917 21 C 0.026 3.974 22 N -0.915 5.915 23 Si 0.948 3.052 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.251 1.251 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.433 0.567 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.174 0.826 35 H 0.165 0.835 36 H 0.119 0.881 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.690 3.498 15.019 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.087 4.087 3 C -0.085 4.085 4 C -0.151 4.151 5 C 0.384 3.616 6 O -0.444 6.444 7 O -0.313 6.313 8 C -0.075 4.075 9 C -0.136 4.136 10 C 0.007 3.993 11 C -0.140 4.140 12 C -0.034 4.034 13 C -0.228 4.228 14 C 0.116 3.884 15 F -0.127 7.127 16 C -0.299 4.299 17 C 0.123 3.877 18 O -0.117 6.117 19 C -0.472 4.472 20 H 0.101 0.899 21 C -0.175 4.175 22 N -0.555 5.555 23 Si 0.771 3.229 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.175 1.175 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.295 0.705 32 H 0.183 0.817 33 H 0.175 0.825 34 H 0.192 0.808 35 H 0.182 0.818 36 H 0.137 0.863 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.330 3.625 14.748 18.948 hybrid contribution -0.424 0.666 -1.084 1.341 sum 10.906 4.291 13.664 18.002 Atomic orbital electron populations 1.20877 0.90793 1.02986 1.02811 1.20008 0.96763 0.92059 0.99874 1.21092 0.92787 0.98183 0.96390 1.19171 0.92944 0.91675 1.11290 1.20793 0.81141 0.88715 0.70990 1.90872 1.70626 1.34524 1.48392 1.84518 1.19170 1.42519 1.85052 1.21304 1.01653 0.90011 0.94504 1.21242 0.92131 0.99774 1.00416 1.18903 0.93677 0.91097 0.95590 1.18137 1.03459 0.97306 0.95113 1.21042 0.95917 0.90477 0.95970 1.21025 1.02409 1.00406 0.98933 1.17732 0.93862 0.81377 0.95416 1.91441 1.78688 1.45687 1.96856 1.21082 1.09662 0.97806 1.01371 1.19083 0.92377 0.88223 0.88009 1.83603 1.66799 1.39390 1.21892 1.20655 1.29784 1.06848 0.89917 0.89932 1.25070 0.97006 1.02064 0.93310 1.69706 1.41481 1.40328 1.03935 0.85520 0.78728 0.79037 0.79609 1.19531 1.19770 1.17459 0.89256 0.91907 0.92162 0.85014 0.70465 0.81663 0.82522 0.80834 0.81782 0.86331 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 9.43 71.24 0.67 -3.23 16 2 C -0.09 -2.83 5.68 -19.67 -0.11 -2.94 16 3 C -0.07 -2.04 9.24 22.51 0.21 -1.83 16 4 C -0.15 -4.07 5.88 -20.07 -0.12 -4.19 16 5 C 0.54 13.59 8.26 70.27 0.58 14.17 16 6 O -0.55 -17.25 17.12 19.83 0.34 -16.91 16 7 O -0.50 -8.24 12.66 -56.59 -0.72 -8.96 16 8 C -0.06 -1.30 9.55 22.26 0.21 -1.09 16 9 C -0.12 -2.93 9.66 22.22 0.21 -2.72 16 10 C 0.01 0.23 4.96 -20.00 -0.10 0.13 16 11 C -0.14 -4.54 4.63 -19.93 -0.09 -4.63 16 12 C -0.02 -0.41 9.72 22.47 0.22 -0.19 16 13 C -0.21 -5.47 10.01 22.31 0.22 -5.25 16 14 C 0.14 4.66 7.30 22.41 0.16 4.83 16 15 F -0.15 -5.10 17.26 44.97 0.78 -4.33 16 16 C -0.28 -11.62 9.14 22.41 0.20 -11.41 16 17 C 0.17 7.28 5.24 22.83 0.12 7.40 16 18 O -0.21 -10.32 6.49 -21.09 -0.14 -10.46 16 19 C -0.40 -21.87 9.95 67.92 0.68 -21.20 16 20 H 0.08 4.85 5.44 -2.91 -0.02 4.83 16 21 C 0.03 1.43 5.49 84.84 0.47 1.89 16 22 N -0.91 -53.16 13.96 21.62 0.30 -52.86 16 23 Si 0.95 44.29 28.62 68.60 1.96 46.26 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.25 -11.56 7.11 99.48 0.71 -10.85 16 27 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 28 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 29 H 0.06 2.34 4.64 -2.39 -0.01 2.32 16 30 H 0.13 4.01 7.64 -2.91 -0.02 3.98 16 31 H 0.43 3.02 9.11 -74.06 -0.67 2.34 16 32 H 0.17 2.75 7.59 -2.91 -0.02 2.72 16 33 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.12 5.59 5.64 -2.91 -0.02 5.57 16 37 H 0.29 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -68.34 330.32 6.54 -61.80 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.48 Total: 15.72 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 3.54 Total: -30.26 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.30 Total: -52.86 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.51 Total: -36.33 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.96 Total: 46.26 kcal Total: -68.34 6.54 -61.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243203750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.522 kcal (2) G-P(sol) polarization free energy of solvation -68.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds