Wall clock time and date at job start Tue Mar 31 2020 11:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86808 * 119.99481 * 2 1 4 4 H 1.48493 * 109.47013 * 240.00110 * 3 2 1 5 5 H 1.48497 * 109.47122 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46893 * 120.00350 * 3 2 1 7 7 C 1.38643 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99679 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.35677 * 116.99786 * 185.06056 * 9 7 2 11 11 C 1.38744 * 120.13804 * 354.41324 * 10 9 7 12 12 C 1.38118 * 120.05409 * 180.02562 * 11 10 9 13 13 C 1.38447 * 120.32138 * 359.71376 * 12 11 10 14 14 C 1.38011 * 120.26908 * 0.56039 * 13 12 11 15 15 C 1.39293 * 119.94592 * 359.44683 * 14 13 12 16 16 C 1.48269 * 120.15918 * 180.29862 * 15 14 13 17 17 C 1.39379 * 120.14096 * 64.99685 * 16 15 14 18 18 C 1.37991 * 119.89947 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.91179 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47020 * 89.99813 * 19 18 17 21 21 O 1.20828 * 120.00689 * 359.97438 * 20 19 18 22 22 O 1.34235 * 119.99843 * 179.97438 * 20 19 18 23 23 C 1.38366 * 120.17528 * 359.97438 * 18 17 16 24 24 C 1.38260 * 120.28457 * 0.02562 * 23 18 17 25 25 C 1.38263 * 120.10040 * 359.73899 * 24 23 18 26 26 F 1.35095 * 120.09678 * 180.25429 * 25 24 23 27 27 H 0.97004 * 120.00441 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.97188 * 359.97438 * 11 10 9 29 29 H 1.07997 * 119.83488 * 179.97438 * 12 11 10 30 30 H 1.07996 * 119.86318 * 180.30477 * 13 12 11 31 31 H 1.08001 * 120.02358 * 179.71621 * 14 13 12 32 32 H 1.08001 * 120.05431 * 359.95653 * 17 16 15 33 33 H 1.08995 * 109.46707 * 209.99530 * 19 18 17 34 34 H 1.08997 * 109.46858 * 329.99776 * 19 18 17 35 35 H 0.96703 * 116.99734 * 179.97438 * 22 20 19 36 36 H 1.08005 * 119.85557 * 180.02562 * 23 18 17 37 37 H 1.07999 * 119.95673 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1031 1.6966 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0699 -3.5036 0.1056 11 6 3.4558 -3.4402 0.0913 12 6 4.2023 -4.5973 0.1988 13 6 3.5746 -5.8246 0.3273 14 6 2.1968 -5.9037 0.3374 15 6 1.4330 -4.7439 0.2296 16 6 -0.0475 -4.8227 0.2466 17 6 -0.7120 -5.2606 1.3908 18 6 -2.0900 -5.3315 1.4013 19 6 -2.8088 -5.8045 2.6387 20 6 -3.1135 -4.6241 3.5246 21 8 -2.7808 -3.5129 3.1863 22 8 -3.7547 -4.8072 4.6896 23 6 -2.8137 -4.9686 0.2793 24 6 -2.1622 -4.5331 -0.8598 25 6 -0.7820 -4.4529 -0.8815 26 9 -0.1458 -4.0226 -1.9928 27 1 -0.4851 0.8400 0.0004 28 1 3.9513 -2.4854 -0.0049 29 1 5.2809 -4.5439 0.1869 30 1 4.1656 -6.7242 0.4159 31 1 1.7113 -6.8636 0.4333 32 1 -0.1492 -5.5443 2.2679 33 1 -3.7396 -6.2944 2.3531 34 1 -2.1773 -6.5103 3.1782 35 1 -3.9276 -4.0200 5.2239 36 1 -3.8921 -5.0257 0.2933 37 1 -2.7323 -4.2508 -1.7325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245318450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:59 Heat of formation + Delta-G solvation = -112.911286 kcal Electronic energy + Delta-G solvation = -25829.668247 eV Core-core repulsion = 21838.151743 eV Total energy + Delta-G solvation = -3991.516504 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.10414 -40.26708 -39.25905 -38.22666 -36.33584 -35.98111 -32.88606 -32.25320 -31.76026 -29.19605 -28.47891 -27.32651 -25.33322 -23.20433 -22.56127 -21.39632 -21.27999 -19.92360 -17.98529 -17.94562 -17.25619 -16.72686 -16.42793 -16.30646 -15.41105 -15.35718 -14.90886 -14.61126 -14.32518 -14.15899 -13.72890 -13.58001 -13.45031 -13.10298 -12.96427 -12.84724 -12.55413 -12.07260 -11.79450 -11.65590 -11.52372 -11.40526 -11.29778 -11.02392 -10.84488 -10.75420 -10.47445 -10.43731 -10.41244 -9.35655 -8.82522 -8.63962 -8.23616 -7.87568 -7.17732 -6.40775 -3.99985 1.46431 1.62180 2.16901 2.32647 2.38679 3.12591 3.14577 3.16299 3.18699 3.98159 4.05104 4.51563 4.65324 4.84253 4.93059 5.10577 5.21117 5.23759 5.30974 5.36803 5.45848 5.54924 5.64515 5.80492 5.82762 6.03883 6.22704 6.28822 6.39625 6.52826 6.57665 6.67605 6.68938 6.74974 6.86820 7.08095 7.15169 7.34039 7.35474 7.43820 7.79187 7.98205 8.00699 9.02506 9.71301 10.75438 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.005400 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.082272 B = 5183.894471 C = 6441.966266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.043 3.957 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.396 4.396 8 H 0.091 0.909 9 O -0.159 6.159 10 C 0.170 3.830 11 C -0.235 4.235 12 C -0.066 4.066 13 C -0.219 4.219 14 C -0.055 4.055 15 C -0.145 4.145 16 C -0.037 4.037 17 C -0.065 4.065 18 C -0.106 4.106 19 C -0.062 4.062 20 C 0.466 3.534 21 O -0.487 6.487 22 O -0.525 6.525 23 C -0.082 4.082 24 C -0.155 4.155 25 C 0.136 3.864 26 F -0.128 7.128 27 H 0.271 0.729 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.408 0.592 36 H 0.124 0.876 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.854 -12.133 4.551 13.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.472 4.472 8 H 0.109 0.891 9 O -0.061 6.061 10 C 0.115 3.885 11 C -0.254 4.254 12 C -0.085 4.085 13 C -0.238 4.238 14 C -0.073 4.073 15 C -0.146 4.146 16 C -0.038 4.038 17 C -0.083 4.083 18 C -0.106 4.106 19 C -0.099 4.099 20 C 0.307 3.693 21 O -0.372 6.372 22 O -0.338 6.338 23 C -0.100 4.100 24 C -0.174 4.174 25 C 0.117 3.883 26 F -0.106 7.106 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.267 0.733 36 H 0.142 0.858 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.111 -11.891 4.135 13.588 hybrid contribution 0.580 1.663 0.166 1.769 sum -4.531 -10.229 4.301 11.986 Atomic orbital electron populations 1.70055 1.05875 1.27764 1.44654 1.25286 0.95806 0.98764 0.96427 0.85815 0.78749 0.79906 0.79161 1.19469 1.20254 1.19505 1.21277 0.91747 0.80827 1.53347 0.89129 1.83985 1.34089 1.11234 1.76759 1.19316 0.90087 0.87431 0.91672 1.21107 0.93458 0.99171 1.11674 1.20820 0.98502 0.92380 0.96760 1.20483 0.94051 0.97011 1.12278 1.20647 0.93440 0.95682 0.97523 1.17619 0.90298 0.91563 1.15140 1.18548 0.92861 0.99913 0.92505 1.20834 0.92866 0.98013 0.96568 1.19021 0.93402 1.04086 0.94092 1.20150 1.02919 0.94324 0.92504 1.23544 0.74496 0.91305 0.79974 1.90886 1.47729 1.26421 1.72161 1.84504 1.72013 1.44175 1.33144 1.20636 0.99193 0.98187 0.92001 1.20919 0.92466 1.03859 1.00147 1.17789 0.90140 0.97007 0.83409 1.91507 1.82375 1.86806 1.49951 0.91944 0.85358 0.87420 0.87426 0.86889 0.85589 0.86962 0.86910 0.73325 0.85781 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.71 13.67 55.48 0.76 -24.95 16 2 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 3 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.40 -11.35 9.49 30.88 0.29 -11.05 16 8 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 9 O -0.16 -4.64 8.93 0.34 0.00 -4.64 16 10 C 0.17 4.27 6.44 -38.75 -0.25 4.02 16 11 C -0.23 -5.25 9.16 -39.44 -0.36 -5.61 16 12 C -0.07 -1.24 10.03 -39.55 -0.40 -1.64 16 13 C -0.22 -3.83 10.03 -39.59 -0.40 -4.23 16 14 C -0.05 -1.00 9.73 -39.27 -0.38 -1.39 16 15 C -0.14 -3.17 5.03 -104.73 -0.53 -3.70 16 16 C -0.04 -0.78 4.95 -104.84 -0.52 -1.30 16 17 C -0.06 -1.14 9.38 -39.25 -0.37 -1.51 16 18 C -0.11 -1.60 4.37 -104.66 -0.46 -2.06 16 19 C -0.06 -0.67 5.94 -29.03 -0.17 -0.84 16 20 C 0.47 6.25 8.32 36.00 0.30 6.55 16 21 O -0.49 -9.26 16.79 -18.75 -0.31 -9.57 16 22 O -0.53 -5.27 13.42 -39.27 -0.53 -5.79 16 23 C -0.08 -1.25 9.69 -39.53 -0.38 -1.64 16 24 C -0.16 -2.76 10.01 -39.56 -0.40 -3.16 16 25 C 0.14 2.90 6.95 -39.07 -0.27 2.63 16 26 F -0.13 -3.02 16.64 2.25 0.04 -2.98 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.11 0.87 8.08 -51.93 -0.42 0.45 16 34 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.41 2.67 9.10 45.56 0.41 3.08 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -36.31 338.12 -7.02 -43.34 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -2.67 Total: 7.25 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -4.38 Total: -23.81 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.76 Total: -24.95 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.84 Total: -20.01 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.31 -7.02 -43.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245318450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.576 kcal (2) G-P(sol) polarization free energy of solvation -36.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds