Wall clock time and date at job start Tue Mar 31 2020 11:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86808 * 119.99481 * 2 1 4 4 H 1.48493 * 109.47013 * 240.00110 * 3 2 1 5 5 H 1.48497 * 109.47122 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46893 * 120.00350 * 3 2 1 7 7 C 1.38643 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99679 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.35677 * 116.99786 * 185.06056 * 9 7 2 11 11 C 1.38744 * 120.13804 * 354.41324 * 10 9 7 12 12 C 1.38118 * 120.05409 * 180.02562 * 11 10 9 13 13 C 1.38447 * 120.32138 * 359.71376 * 12 11 10 14 14 C 1.38011 * 120.26908 * 0.56039 * 13 12 11 15 15 C 1.39293 * 119.94592 * 359.44683 * 14 13 12 16 16 C 1.48269 * 120.15918 * 180.29862 * 15 14 13 17 17 C 1.39379 * 120.14096 * 64.99685 * 16 15 14 18 18 C 1.37991 * 119.89947 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.91179 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47020 * 89.99813 * 19 18 17 21 21 O 1.20828 * 120.00689 * 359.97438 * 20 19 18 22 22 O 1.34235 * 119.99843 * 179.97438 * 20 19 18 23 23 C 1.38366 * 120.17528 * 359.97438 * 18 17 16 24 24 C 1.38260 * 120.28457 * 0.02562 * 23 18 17 25 25 C 1.38263 * 120.10040 * 359.73899 * 24 23 18 26 26 F 1.35095 * 120.09678 * 180.25429 * 25 24 23 27 27 H 0.97004 * 120.00441 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.97188 * 359.97438 * 11 10 9 29 29 H 1.07997 * 119.83488 * 179.97438 * 12 11 10 30 30 H 1.07996 * 119.86318 * 180.30477 * 13 12 11 31 31 H 1.08001 * 120.02358 * 179.71621 * 14 13 12 32 32 H 1.08001 * 120.05431 * 359.95653 * 17 16 15 33 33 H 1.08995 * 109.46707 * 209.99530 * 19 18 17 34 34 H 1.08997 * 109.46858 * 329.99776 * 19 18 17 35 35 H 0.96703 * 116.99734 * 179.97438 * 22 20 19 36 36 H 1.08005 * 119.85557 * 180.02562 * 23 18 17 37 37 H 1.07999 * 119.95673 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1031 1.6966 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0699 -3.5036 0.1056 11 6 3.4558 -3.4402 0.0913 12 6 4.2023 -4.5973 0.1988 13 6 3.5746 -5.8246 0.3273 14 6 2.1968 -5.9037 0.3374 15 6 1.4330 -4.7439 0.2296 16 6 -0.0475 -4.8227 0.2466 17 6 -0.7120 -5.2606 1.3908 18 6 -2.0900 -5.3315 1.4013 19 6 -2.8088 -5.8045 2.6387 20 6 -3.1135 -4.6241 3.5246 21 8 -2.7808 -3.5129 3.1863 22 8 -3.7547 -4.8072 4.6896 23 6 -2.8137 -4.9686 0.2793 24 6 -2.1622 -4.5331 -0.8598 25 6 -0.7820 -4.4529 -0.8815 26 9 -0.1458 -4.0226 -1.9928 27 1 -0.4851 0.8400 0.0004 28 1 3.9513 -2.4854 -0.0049 29 1 5.2809 -4.5439 0.1869 30 1 4.1656 -6.7242 0.4159 31 1 1.7113 -6.8636 0.4333 32 1 -0.1492 -5.5443 2.2679 33 1 -3.7396 -6.2944 2.3531 34 1 -2.1773 -6.5103 3.1782 35 1 -3.9276 -4.0200 5.2239 36 1 -3.8921 -5.0257 0.2933 37 1 -2.7323 -4.2508 -1.7325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245318450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:58 Heat of formation + Delta-G solvation = -137.094972 kcal Electronic energy + Delta-G solvation = -25830.716930 eV Core-core repulsion = 21838.151743 eV Total energy + Delta-G solvation = -3992.565187 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.76907 -41.38468 -40.86526 -39.62934 -38.04882 -37.01681 -34.38559 -34.07431 -33.12241 -30.78984 -29.98976 -28.56851 -27.35666 -24.65293 -23.80255 -23.08155 -22.61117 -21.26991 -19.82565 -19.00030 -18.91153 -18.34049 -17.61306 -17.46080 -16.86907 -16.64464 -16.56503 -16.31006 -16.07650 -15.56713 -15.43633 -15.18817 -14.94237 -14.45000 -14.32098 -14.21486 -14.11079 -13.58357 -13.24478 -13.02013 -12.92631 -12.83017 -12.55886 -12.46583 -12.42386 -12.37163 -12.17555 -11.91097 -11.59920 -11.19289 -10.82003 -10.08729 -9.67783 -9.38123 -8.90829 -8.46650 -6.14731 0.05499 0.24485 0.61560 0.76064 1.29227 1.31377 1.41304 1.46034 2.14133 2.14800 2.75095 2.84579 3.14672 3.44132 3.48141 3.60104 3.70195 3.86505 4.18374 4.23170 4.25362 4.28951 4.49585 4.54593 4.60902 4.63588 4.68322 4.94305 5.01162 5.08383 5.09819 5.18800 5.29891 5.32924 5.45831 5.62495 5.66306 5.70843 5.73656 5.96288 6.02327 6.22022 6.96082 7.06974 7.78836 8.74907 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.005400 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.082272 B = 5183.894471 C = 6441.966266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.418 4.418 8 H 0.099 0.901 9 O -0.212 6.212 10 C 0.125 3.875 11 C -0.254 4.254 12 C -0.066 4.066 13 C -0.192 4.192 14 C -0.055 4.055 15 C -0.153 4.153 16 C -0.067 4.067 17 C -0.075 4.075 18 C -0.095 4.095 19 C -0.058 4.058 20 C 0.475 3.525 21 O -0.556 6.556 22 O -0.510 6.510 23 C -0.078 4.078 24 C -0.164 4.164 25 C 0.087 3.913 26 F -0.157 7.157 27 H 0.270 0.730 28 H 0.117 0.883 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.424 0.576 36 H 0.167 0.833 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 -15.255 6.311 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.219 4.219 3 Si 0.835 3.165 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.116 0.884 9 O -0.117 6.117 10 C 0.074 3.926 11 C -0.273 4.273 12 C -0.084 4.084 13 C -0.210 4.210 14 C -0.073 4.073 15 C -0.154 4.154 16 C -0.068 4.068 17 C -0.092 4.092 18 C -0.095 4.095 19 C -0.094 4.094 20 C 0.319 3.681 21 O -0.447 6.447 22 O -0.324 6.324 23 C -0.095 4.095 24 C -0.182 4.182 25 C 0.068 3.932 26 F -0.136 7.136 27 H 0.079 0.921 28 H 0.135 0.865 29 H 0.165 0.835 30 H 0.175 0.825 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.165 0.835 35 H 0.285 0.715 36 H 0.184 0.816 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.769 -15.097 5.927 16.906 hybrid contribution 0.506 2.215 -0.265 2.288 sum -4.263 -12.882 5.661 14.703 Atomic orbital electron populations 1.70230 1.07993 1.28546 1.48185 1.26572 0.96783 1.02680 0.95878 0.84702 0.77442 0.74461 0.79918 1.18120 1.19628 1.18116 1.21771 0.92405 0.81726 1.53489 0.88362 1.83969 1.35374 1.12145 1.80258 1.20005 0.91497 0.87680 0.93432 1.21271 0.92895 1.00488 1.12634 1.21265 1.00348 0.91462 0.95333 1.21128 0.94002 0.98175 1.07698 1.21165 0.94071 0.95945 0.96124 1.18142 0.91687 0.91606 1.13961 1.18791 0.92738 1.01616 0.93655 1.21120 0.94371 0.97940 0.95813 1.19504 0.92688 1.01586 0.95737 1.20346 1.05139 0.93685 0.90277 1.23963 0.72969 0.90795 0.80349 1.90900 1.50801 1.29168 1.73797 1.84463 1.70790 1.45035 1.32064 1.21182 1.01280 0.96189 0.90868 1.21256 0.91297 1.03748 1.01942 1.18330 0.91761 0.99649 0.83467 1.91415 1.83114 1.87670 1.51359 0.92119 0.86488 0.83550 0.82510 0.83125 0.84022 0.82501 0.83530 0.71455 0.81571 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.34 13.67 21.61 0.30 -59.04 16 2 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 3 Si 1.02 45.42 29.55 68.60 2.03 47.45 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.42 -25.71 9.49 67.92 0.64 -25.06 16 8 H 0.10 5.56 5.21 -2.91 -0.02 5.55 16 9 O -0.21 -13.42 8.93 -21.69 -0.19 -13.61 16 10 C 0.13 6.63 6.44 22.81 0.15 6.78 16 11 C -0.25 -11.66 9.16 22.36 0.20 -11.46 16 12 C -0.07 -2.32 10.03 22.29 0.22 -2.10 16 13 C -0.19 -5.94 10.03 22.27 0.22 -5.72 16 14 C -0.06 -1.91 9.73 22.47 0.22 -1.69 16 15 C -0.15 -6.86 5.03 -19.93 -0.10 -6.96 16 16 C -0.07 -2.90 4.95 -20.01 -0.10 -3.00 16 17 C -0.07 -2.58 9.38 22.49 0.21 -2.37 16 18 C -0.09 -2.68 4.37 -19.89 -0.09 -2.77 16 19 C -0.06 -1.01 5.94 29.10 0.17 -0.84 16 20 C 0.48 11.55 8.32 71.23 0.59 12.15 16 21 O -0.56 -21.10 16.79 21.96 0.37 -20.73 16 22 O -0.51 -8.57 13.42 -51.47 -0.69 -9.26 16 23 C -0.08 -2.25 9.69 22.31 0.22 -2.04 16 24 C -0.16 -6.00 10.01 22.28 0.22 -5.78 16 25 C 0.09 3.95 6.95 22.60 0.16 4.11 16 26 F -0.16 -8.10 16.64 44.97 0.75 -7.35 16 27 H 0.27 16.22 8.31 -92.70 -0.77 15.45 16 28 H 0.12 5.48 5.64 -2.91 -0.02 5.47 16 29 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 30 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 31 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 32 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.16 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.15 1.68 8.08 -2.39 -0.02 1.66 16 35 H 0.42 4.51 9.10 -74.05 -0.67 3.84 16 36 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -90.67 338.12 6.43 -84.24 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.47 Total: 25.86 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 3.41 Total: -47.55 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.30 Total: -59.04 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.52 Total: -43.60 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.75 Total: -7.35 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -90.67 6.43 -84.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245318450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.856 kcal (2) G-P(sol) polarization free energy of solvation -90.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds