Wall clock time and date at job start Tue Mar 31 2020 10:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30305 * 126.34163 * 2 1 4 4 N 1.28524 * 110.07735 * 179.97438 * 3 2 1 5 5 C 1.31279 * 109.86182 * 0.02562 * 4 3 2 6 6 S 1.76192 * 126.48644 * 180.02562 * 5 4 3 7 7 C 1.81001 * 100.00087 * 359.97375 * 6 5 4 8 8 C 1.52998 * 109.47073 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47108 * 179.97438 * 8 7 6 10 10 S 1.80995 * 109.47578 * 180.02562 * 9 8 7 11 11 C 1.76198 * 100.00266 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00149 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99783 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00421 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99897 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47008 * 89.99826 * 15 13 11 17 17 H 1.48497 * 109.47182 * 209.99691 * 15 13 11 18 18 H 1.48497 * 109.46910 * 329.99874 * 15 13 11 19 19 N 1.36542 * 107.03065 * 359.97438 * 5 4 3 20 20 C 1.46501 * 127.14562 * 180.02562 * 19 5 4 21 21 C 1.50700 * 109.47413 * 89.97551 * 20 19 5 22 22 N 1.34774 * 120.00026 * 180.02562 * 21 20 19 23 23 O 1.21278 * 119.99760 * 0.02562 * 21 20 19 24 24 H 1.08994 * 109.46858 * 90.02796 * 1 2 3 25 25 H 1.09001 * 109.46950 * 210.02557 * 1 2 3 26 26 H 1.08998 * 109.46965 * 330.02675 * 1 2 3 27 27 H 1.09000 * 109.46608 * 299.99574 * 7 6 5 28 28 H 1.08995 * 109.46795 * 60.00035 * 7 6 5 29 29 H 1.08997 * 109.46961 * 299.99916 * 8 7 6 30 30 H 1.09000 * 109.47487 * 59.99718 * 8 7 6 31 31 H 1.09008 * 109.46743 * 299.99997 * 9 8 7 32 32 H 1.09000 * 109.47120 * 59.99562 * 9 8 7 33 33 H 0.97004 * 120.00124 * 180.02562 * 14 13 11 34 34 H 1.09005 * 109.47159 * 209.97765 * 20 19 5 35 35 H 1.09004 * 109.46609 * 329.97204 * 20 19 5 36 36 H 0.97003 * 119.99974 * 359.97438 * 22 21 20 37 37 H 0.97002 * 119.99928 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5130 0.6896 0.0005 5 6 3.5954 -0.6206 0.0004 6 16 5.0749 -1.5773 0.0016 7 6 6.3068 -0.2512 0.0021 8 6 7.7107 -0.8593 0.0026 9 6 8.7520 0.2617 0.0024 10 16 10.4129 -0.4575 0.0022 11 6 11.3833 1.0132 0.0028 12 1 10.9000 1.9790 0.0028 13 6 12.7688 0.9304 0.0034 14 7 13.3579 -0.2468 0.0039 15 14 13.7976 2.4896 0.0033 16 1 14.0696 2.9031 1.4034 17 1 15.0825 2.2348 -0.6961 18 1 13.0584 3.5703 -0.6973 19 7 2.3175 -1.1016 0.0002 20 6 1.9010 -2.5062 0.0006 21 6 1.7584 -2.9876 1.4215 22 7 1.3823 -4.2581 1.6680 23 8 1.9822 -2.2317 2.3431 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 6.1782 0.3645 -0.8881 28 1 6.1769 0.3648 0.8919 29 1 7.8395 -1.4752 0.8925 30 1 7.8403 -1.4751 -0.8874 31 1 8.6229 0.8773 -0.8878 32 1 8.6226 0.8779 0.8922 33 1 14.3262 -0.3046 0.0047 34 1 0.9443 -2.6016 -0.5131 35 1 2.6509 -3.1075 -0.5134 36 1 1.2029 -4.8625 0.9308 37 1 1.2902 -4.5679 2.5826 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252375853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:57 Heat of formation + Delta-G solvation = 24.435332 kcal Electronic energy + Delta-G solvation = -20606.976324 eV Core-core repulsion = 17251.825151 eV Total energy + Delta-G solvation = -3355.151173 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.11758 -39.99457 -35.27959 -34.37911 -34.31782 -32.64706 -32.41244 -29.01404 -28.10622 -26.91740 -25.45199 -23.22174 -22.12664 -21.56417 -20.72391 -18.58058 -17.98346 -17.46853 -17.35931 -16.37429 -16.10835 -15.79375 -15.21015 -15.04069 -14.78082 -14.38703 -14.28682 -14.01425 -13.45186 -13.24166 -13.04432 -12.99919 -12.60525 -11.99564 -11.85169 -11.60270 -11.25354 -11.06299 -11.04330 -10.77388 -10.64513 -10.62508 -10.36829 -10.34165 -10.30355 -9.92580 -9.57498 -9.04209 -8.32053 -7.74956 -6.52808 -6.21558 -3.92132 0.89735 1.35177 1.87931 1.98550 2.13014 2.65541 2.86347 3.24395 3.24990 3.31695 3.57316 3.90611 4.00212 4.13121 4.23461 4.27277 4.53022 5.00349 5.07567 5.08724 5.15146 5.16847 5.32619 5.39982 5.50725 5.60742 5.74360 5.77809 5.98866 6.08991 6.22772 6.35618 6.46275 6.60348 6.68322 7.53867 7.62982 8.38773 8.47396 9.25130 10.86638 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.002316 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.101861 B =12087.695679 C =12835.325109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.187 3.813 3 N -0.282 5.282 4 N -0.287 5.287 5 C 0.175 3.825 6 S -0.013 6.013 7 C -0.089 4.089 8 C -0.085 4.085 9 C -0.108 4.108 10 S -0.129 6.129 11 C -0.515 4.515 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.870 5.870 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.455 5.455 20 C 0.086 3.914 21 C 0.501 3.499 22 N -0.848 5.848 23 O -0.514 6.514 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.267 0.733 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.404 0.596 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.667 -10.923 -1.712 31.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 N -0.121 5.121 4 N -0.130 5.130 5 C -0.200 4.200 6 S 0.217 5.783 7 C -0.239 4.239 8 C -0.126 4.126 9 C -0.259 4.259 10 S 0.099 5.901 11 C -0.664 4.664 12 H 0.092 0.908 13 C -0.138 4.138 14 N -0.506 5.506 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.196 1.196 19 N -0.150 5.150 20 C -0.042 4.042 21 C 0.282 3.718 22 N -0.414 5.414 23 O -0.387 6.387 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.233 0.767 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -28.400 -11.162 -1.244 30.540 hybrid contribution -0.447 1.663 0.077 1.724 sum -28.847 -9.499 -1.168 30.393 Atomic orbital electron populations 1.20205 0.83622 1.04643 1.03835 1.25026 0.96752 0.82049 1.04395 1.73964 0.96480 1.23651 1.17997 1.74723 1.11922 1.06355 1.20024 1.26828 0.90473 0.95557 1.07131 1.85368 0.90163 1.10296 1.92522 1.23770 0.94733 0.97854 1.07553 1.21101 0.89226 0.98344 1.03883 1.23240 0.99283 0.99821 1.03546 1.84598 0.94024 1.14614 1.96897 1.22692 0.93032 0.92178 1.58452 0.90804 1.25015 0.96981 0.97220 0.94571 1.70021 1.10187 1.23073 1.47322 0.86154 0.79083 0.81848 0.78398 1.20252 1.20773 1.19627 1.45824 1.05302 1.06762 1.57123 1.21698 1.05370 0.80749 0.96408 1.20613 0.77106 0.82827 0.91259 1.43707 1.72323 1.12413 1.12940 1.90887 1.47717 1.54569 1.45542 0.89442 0.90802 0.88368 0.88366 0.88373 0.90448 0.90444 0.91604 0.91605 0.92309 0.85166 0.85167 0.76723 0.75891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.09 36.01 0.36 -0.04 16 2 C 0.19 2.20 8.07 -153.99 -1.24 0.96 16 3 N -0.28 -4.48 12.18 33.00 0.40 -4.08 16 4 N -0.29 -4.89 11.60 30.68 0.36 -4.54 16 5 C 0.17 2.50 8.07 -88.34 -0.71 1.78 16 6 S -0.01 -0.16 21.81 -107.50 -2.34 -2.51 16 7 C -0.09 -1.29 5.23 37.16 0.19 -1.10 16 8 C -0.09 -1.38 5.22 -26.73 -0.14 -1.52 16 9 C -0.11 -2.20 5.67 37.16 0.21 -1.99 16 10 S -0.13 -3.39 21.44 -107.50 -2.30 -5.69 16 11 C -0.52 -14.89 9.50 30.94 0.29 -14.60 16 12 H 0.07 2.08 7.80 -52.49 -0.41 1.67 16 13 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 14 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 15 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 N -0.45 -5.02 2.30 -114.81 -0.26 -5.29 16 20 C 0.09 0.49 6.23 -5.19 -0.03 0.45 16 21 C 0.50 3.68 8.17 -10.99 -0.09 3.59 16 22 N -0.85 -2.31 8.87 31.22 0.28 -2.03 16 23 O -0.51 -6.83 17.27 5.56 0.10 -6.73 16 24 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.33 7.92 -51.93 -0.41 -0.09 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 1.44 8.14 -51.92 -0.42 1.01 16 28 H 0.10 1.51 8.14 -51.92 -0.42 1.08 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.32 8.14 -51.91 -0.42 0.90 16 32 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.13 0.18 7.88 -51.93 -0.41 -0.23 16 35 H 0.13 0.51 7.86 -51.93 -0.41 0.11 16 36 H 0.40 -0.40 8.83 -40.82 -0.36 -0.76 16 37 H 0.41 1.04 8.93 -40.82 -0.36 0.68 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -39.74 353.99 -8.87 -48.61 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -4.88 Total: -3.96 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.25 Total: -10.52 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 1.50 Total: -41.31 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: 0.10 Total: -6.73 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -4.65 Total: -8.20 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.74 -8.87 -48.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252375853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.043 kcal (2) G-P(sol) polarization free energy of solvation -39.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds