Wall clock time and date at job start Tue Mar 31 2020 10:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30305 * 126.34163 * 2 1 4 4 N 1.28524 * 110.07735 * 179.97438 * 3 2 1 5 5 C 1.31279 * 109.86182 * 0.02562 * 4 3 2 6 6 S 1.76192 * 126.48644 * 180.02562 * 5 4 3 7 7 C 1.81001 * 100.00087 * 359.97375 * 6 5 4 8 8 C 1.52998 * 109.47073 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47108 * 179.97438 * 8 7 6 10 10 S 1.80995 * 109.47578 * 180.02562 * 9 8 7 11 11 C 1.76198 * 100.00266 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00149 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99783 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00421 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99897 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47008 * 89.99826 * 15 13 11 17 17 H 1.48497 * 109.47182 * 209.99691 * 15 13 11 18 18 H 1.48497 * 109.46910 * 329.99874 * 15 13 11 19 19 N 1.36542 * 107.03065 * 359.97438 * 5 4 3 20 20 C 1.46501 * 127.14562 * 180.02562 * 19 5 4 21 21 C 1.50700 * 109.47413 * 89.97551 * 20 19 5 22 22 N 1.34774 * 120.00026 * 180.02562 * 21 20 19 23 23 O 1.21278 * 119.99760 * 0.02562 * 21 20 19 24 24 H 1.08994 * 109.46858 * 90.02796 * 1 2 3 25 25 H 1.09001 * 109.46950 * 210.02557 * 1 2 3 26 26 H 1.08998 * 109.46965 * 330.02675 * 1 2 3 27 27 H 1.09000 * 109.46608 * 299.99574 * 7 6 5 28 28 H 1.08995 * 109.46795 * 60.00035 * 7 6 5 29 29 H 1.08997 * 109.46961 * 299.99916 * 8 7 6 30 30 H 1.09000 * 109.47487 * 59.99718 * 8 7 6 31 31 H 1.09008 * 109.46743 * 299.99997 * 9 8 7 32 32 H 1.09000 * 109.47120 * 59.99562 * 9 8 7 33 33 H 0.97004 * 120.00124 * 180.02562 * 14 13 11 34 34 H 1.09005 * 109.47159 * 209.97765 * 20 19 5 35 35 H 1.09004 * 109.46609 * 329.97204 * 20 19 5 36 36 H 0.97003 * 119.99974 * 359.97438 * 22 21 20 37 37 H 0.97002 * 119.99928 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5130 0.6896 0.0005 5 6 3.5954 -0.6206 0.0004 6 16 5.0749 -1.5773 0.0016 7 6 6.3068 -0.2512 0.0021 8 6 7.7107 -0.8593 0.0026 9 6 8.7520 0.2617 0.0024 10 16 10.4129 -0.4575 0.0022 11 6 11.3833 1.0132 0.0028 12 1 10.9000 1.9790 0.0028 13 6 12.7688 0.9304 0.0034 14 7 13.3579 -0.2468 0.0039 15 14 13.7976 2.4896 0.0033 16 1 14.0696 2.9031 1.4034 17 1 15.0825 2.2348 -0.6961 18 1 13.0584 3.5703 -0.6973 19 7 2.3175 -1.1016 0.0002 20 6 1.9010 -2.5062 0.0006 21 6 1.7584 -2.9876 1.4215 22 7 1.3823 -4.2581 1.6680 23 8 1.9822 -2.2317 2.3431 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 6.1782 0.3645 -0.8881 28 1 6.1769 0.3648 0.8919 29 1 7.8395 -1.4752 0.8925 30 1 7.8403 -1.4751 -0.8874 31 1 8.6229 0.8773 -0.8878 32 1 8.6226 0.8779 0.8922 33 1 14.3262 -0.3046 0.0047 34 1 0.9443 -2.6016 -0.5131 35 1 2.6509 -3.1075 -0.5134 36 1 1.2029 -4.8625 0.9308 37 1 1.2902 -4.5679 2.5826 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252375853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:56 Heat of formation + Delta-G solvation = -4.542258 kcal Electronic energy + Delta-G solvation = -20608.232887 eV Core-core repulsion = 17251.825151 eV Total energy + Delta-G solvation = -3356.407735 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.03372 -40.59600 -36.13081 -35.71261 -34.82591 -34.60172 -33.42709 -29.68692 -28.98048 -28.31097 -27.54279 -24.19318 -22.90882 -22.79940 -21.48439 -19.58982 -19.21837 -18.59432 -18.09176 -17.04291 -16.96041 -16.89760 -16.53798 -16.47383 -16.37524 -15.59827 -15.09797 -14.94496 -14.84041 -14.20450 -13.83218 -13.82233 -13.50220 -13.44663 -13.41652 -12.95137 -12.93505 -12.64491 -12.44737 -12.09412 -12.03991 -11.99153 -11.50599 -11.33188 -11.14980 -11.13837 -10.82104 -10.78755 -10.36125 -8.76642 -8.66771 -8.38132 -6.14003 -0.11941 0.47307 0.87712 1.31667 1.37214 1.39190 1.40716 1.48511 1.65818 1.74288 2.26980 2.41300 2.96272 3.29214 3.32749 3.49667 3.76721 3.79636 3.88008 3.90718 3.98230 4.11202 4.29982 4.34238 4.60769 4.63267 4.73612 4.75768 4.82220 4.97191 4.97615 5.14464 5.40242 5.62125 5.78390 6.18072 6.30858 7.04560 7.18303 7.49071 8.71220 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.002316 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.101861 B =12087.695679 C =12835.325109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.199 3.801 3 N -0.336 5.336 4 N -0.333 5.333 5 C 0.155 3.845 6 S 0.028 5.972 7 C -0.088 4.088 8 C -0.072 4.072 9 C -0.087 4.087 10 S -0.184 6.184 11 C -0.540 4.540 12 H 0.072 0.928 13 C 0.017 3.983 14 N -0.906 5.906 15 Si 0.993 3.007 16 H -0.268 1.268 17 H -0.272 1.272 18 H -0.265 1.265 19 N -0.451 5.451 20 C 0.076 3.924 21 C 0.500 3.500 22 N -0.822 5.822 23 O -0.583 6.583 24 H 0.118 0.882 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.272 0.728 34 H 0.182 0.818 35 H 0.151 0.849 36 H 0.425 0.575 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.760 -12.062 -2.504 34.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.071 4.071 3 N -0.175 5.175 4 N -0.175 5.175 5 C -0.221 4.221 6 S 0.257 5.743 7 C -0.239 4.239 8 C -0.112 4.112 9 C -0.238 4.238 10 S 0.045 5.955 11 C -0.688 4.688 12 H 0.090 0.910 13 C -0.188 4.188 14 N -0.542 5.542 15 Si 0.815 3.185 16 H -0.194 1.194 17 H -0.197 1.197 18 H -0.189 1.189 19 N -0.145 5.145 20 C -0.050 4.050 21 C 0.283 3.717 22 N -0.388 5.388 23 O -0.462 6.462 24 H 0.136 0.864 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.199 0.801 35 H 0.169 0.831 36 H 0.258 0.742 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -30.534 -12.384 -2.063 33.014 hybrid contribution 0.004 1.881 0.324 1.909 sum -30.530 -10.503 -1.739 32.333 Atomic orbital electron populations 1.20504 0.79814 1.05806 1.06095 1.25983 0.98588 0.81426 1.01115 1.73844 0.96706 1.26030 1.20928 1.74577 1.13157 1.08132 1.21679 1.26983 0.92144 0.95382 1.07606 1.85014 0.88744 1.07943 1.92620 1.23520 0.94678 0.98686 1.07018 1.20929 0.88975 0.96918 1.04384 1.23156 0.96375 1.00827 1.03434 1.84515 0.98259 1.15723 1.97048 1.23041 0.94085 0.92731 1.58925 0.91031 1.26037 0.98193 1.00868 0.93746 1.70140 1.10747 1.25396 1.47927 0.85036 0.77312 0.77378 0.78814 1.19360 1.19698 1.18905 1.46046 1.03914 1.08670 1.55885 1.22265 1.08583 0.78065 0.96055 1.20887 0.76302 0.83397 0.91143 1.43546 1.69900 1.11198 1.14111 1.90875 1.51264 1.56599 1.47441 0.86411 0.88278 0.88536 0.88516 0.89477 0.90264 0.89597 0.91455 0.91876 0.91893 0.80081 0.83113 0.74230 0.75493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.09 71.24 0.72 0.10 16 2 C 0.20 4.44 8.07 137.63 1.11 5.55 16 3 N -0.34 -10.85 12.18 -49.52 -0.60 -11.46 16 4 N -0.33 -11.60 11.60 -56.86 -0.66 -12.26 16 5 C 0.15 4.37 8.07 179.55 1.45 5.82 16 6 S 0.03 0.69 21.81 -56.49 -1.23 -0.54 16 7 C -0.09 -2.58 5.23 71.98 0.38 -2.20 16 8 C -0.07 -2.32 5.22 30.59 0.16 -2.16 16 9 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 10 S -0.18 -9.84 21.44 -56.49 -1.21 -11.05 16 11 C -0.54 -31.71 9.50 67.95 0.65 -31.07 16 12 H 0.07 4.09 7.80 -2.91 -0.02 4.06 16 13 C 0.02 0.96 5.49 84.86 0.47 1.43 16 14 N -0.91 -54.97 13.22 21.65 0.29 -54.69 16 15 Si 0.99 44.79 29.55 68.60 2.03 46.81 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 19 N -0.45 -9.20 2.30 -517.16 -1.19 -10.38 16 20 C 0.08 0.60 6.23 85.63 0.53 1.14 16 21 C 0.50 6.15 8.17 87.66 0.72 6.87 16 22 N -0.82 -1.95 8.87 -173.54 -1.54 -3.49 16 23 O -0.58 -15.10 17.27 -3.02 -0.05 -15.15 16 24 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.10 0.48 7.92 -2.39 -0.02 0.46 16 26 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 2.86 8.14 -2.40 -0.02 2.84 16 28 H 0.09 2.75 8.14 -2.40 -0.02 2.73 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.18 -0.47 7.88 -2.38 -0.02 -0.49 16 35 H 0.15 0.60 7.86 -2.38 -0.02 0.58 16 36 H 0.42 -2.55 8.83 -92.71 -0.82 -3.37 16 37 H 0.41 1.09 8.93 -92.71 -0.83 0.26 16 Total: -1.00 -91.11 353.99 1.88 -89.23 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -0.53 Total: 0.68 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 6.58 Total: -17.70 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -3.71 Total: -92.28 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.05 Total: -15.15 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -2.44 Total: -11.59 kcal Total: -91.11 1.88 -89.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252375853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.684 kcal (2) G-P(sol) polarization free energy of solvation -91.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds