Wall clock time and date at job start Tue Mar 31 2020 10:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38654 * 120.82358 * 2 1 4 4 Cl 1.73598 * 120.39205 * 359.75109 * 3 2 1 5 5 C 1.38356 * 119.21365 * 180.02562 * 3 2 1 6 6 N 1.31872 * 120.90466 * 0.02562 * 5 3 2 7 7 C 1.31790 * 121.81414 * 0.02562 * 6 5 3 8 8 C 1.38918 * 120.68534 * 359.97438 * 7 6 5 9 9 N 1.39867 * 120.48209 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00555 * 18.98035 * 9 8 7 11 11 O 1.21565 * 119.99424 * 5.51782 * 10 9 8 12 12 C 1.47854 * 120.00680 * 185.52374 * 10 9 8 13 13 C 1.39939 * 120.02203 * 359.71792 * 12 10 9 14 14 C 1.38320 * 120.35168 * 179.76678 * 13 12 10 15 15 C 1.37756 * 120.42034 * 0.51551 * 14 13 12 16 16 C 1.40755 * 120.03574 * 359.74483 * 15 14 13 17 17 C 1.41434 * 120.17591 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99902 * 330.73226 * 17 16 15 19 19 C 1.39934 * 120.00219 * 150.72708 * 17 16 15 20 20 N 1.30828 * 120.00189 * 348.41944 * 19 17 16 21 21 Si 1.86804 * 120.00087 * 168.40839 * 19 17 16 22 22 H 1.48503 * 109.46796 * 90.00465 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00179 * 21 19 17 24 24 H 1.48498 * 109.47328 * 330.00331 * 21 19 17 25 25 C 1.39008 * 120.02719 * 180.02562 * 12 10 9 26 26 H 1.08991 * 109.47585 * 89.99873 * 1 2 3 27 27 H 1.09003 * 109.46810 * 209.99714 * 1 2 3 28 28 H 1.08996 * 109.47269 * 329.99374 * 1 2 3 29 29 H 1.07996 * 119.54415 * 179.97438 * 5 3 2 30 30 H 1.08000 * 119.65763 * 179.97438 * 7 6 5 31 31 H 0.97008 * 120.00172 * 198.98249 * 9 8 7 32 32 H 1.08001 * 119.82340 * 0.03056 * 13 12 10 33 33 H 1.08000 * 119.79159 * 180.26141 * 14 13 12 34 34 H 1.07993 * 119.98623 * 179.76246 * 15 14 13 35 35 H 0.96999 * 120.00763 * 180.02562 * 20 19 17 36 36 H 1.07991 * 120.20576 * 359.94838 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1907 0.0000 4 17 1.3816 2.7122 -0.0065 5 6 3.6005 1.1518 -0.0005 6 7 4.2457 0.0017 -0.0016 7 6 3.6090 -1.1521 -0.0026 8 6 2.2205 -1.1956 -0.0021 9 7 1.5491 -2.4226 -0.0027 10 6 2.1939 -3.5439 0.3759 11 8 3.3262 -3.4757 0.8129 12 6 1.5242 -4.8570 0.2597 13 6 0.2186 -4.9355 -0.2378 14 6 -0.4126 -6.1607 -0.3540 15 6 0.2321 -7.3165 0.0284 16 6 1.5435 -7.2567 0.5362 17 6 2.2084 -8.4416 0.9292 18 1 1.6398 -9.2843 1.2940 19 6 3.6029 -8.5221 0.8453 20 7 4.2735 -7.6031 0.1994 21 14 4.5069 -9.9417 1.6559 22 1 4.6325 -11.0638 0.6913 23 1 5.8600 -9.4934 2.0727 24 1 3.7471 -10.3964 2.8480 25 6 2.1887 -6.0137 0.6506 26 1 -0.3634 0.0000 -1.0275 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 4.1592 2.0760 -0.0010 30 1 4.1725 -2.0735 -0.0038 31 1 0.6193 -2.4666 -0.2757 32 1 -0.2973 -4.0350 -0.5367 33 1 -1.4188 -6.2113 -0.7431 34 1 -0.2688 -8.2690 -0.0617 35 1 5.2402 -7.6590 0.1409 36 1 3.1947 -5.9575 1.0390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274403188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:12 Heat of formation + Delta-G solvation = 11.667906 kcal Electronic energy + Delta-G solvation = -22683.039563 eV Core-core repulsion = 19157.554344 eV Total energy + Delta-G solvation = -3525.485219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98534 -39.19273 -37.29251 -36.77482 -35.37155 -33.84573 -33.12193 -30.91915 -29.68522 -29.43998 -27.90140 -25.48560 -24.23053 -22.66234 -21.95684 -21.10021 -19.94936 -18.29233 -17.57563 -16.76459 -16.44031 -15.95476 -15.28323 -15.11363 -14.82470 -14.66685 -14.22494 -14.03727 -13.37015 -13.33932 -13.06912 -12.99930 -12.85776 -12.65120 -12.17433 -12.03904 -11.80390 -11.38798 -11.30452 -11.18441 -10.96008 -10.85366 -10.60532 -10.16986 -9.85571 -9.65903 -9.37016 -9.30885 -9.21366 -8.21882 -7.80047 -7.63878 -6.86699 -4.55289 0.89223 0.97880 1.83136 1.97263 2.68254 3.02883 3.03934 3.08116 3.14451 3.44327 3.76593 3.85697 4.44230 4.48869 4.51631 4.62577 4.90787 4.93424 5.29404 5.31399 5.42358 5.55280 5.61471 5.82982 5.86752 5.97637 6.07117 6.16912 6.54823 6.76732 6.79524 6.84579 7.08462 7.19962 7.41130 7.52606 7.65793 7.82377 7.88145 8.01637 8.35556 8.44398 8.67327 8.70334 10.08098 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.003082 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.084966 B = 9082.850371 C =10161.810826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C -0.068 4.068 4 Cl -0.059 7.059 5 C 0.079 3.921 6 N -0.449 5.449 7 C 0.085 3.915 8 C 0.130 3.870 9 N -0.665 5.665 10 C 0.567 3.433 11 O -0.516 6.516 12 C -0.134 4.134 13 C -0.215 4.215 14 C -0.097 4.097 15 C -0.203 4.203 16 C 0.099 3.901 17 C -0.459 4.459 18 H 0.082 0.918 19 C 0.071 3.929 20 N -0.790 5.790 21 Si 0.914 3.086 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.260 1.260 25 C -0.078 4.078 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.196 0.804 31 H 0.414 0.586 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.286 0.714 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 13.401 -1.388 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.094 4.094 3 C -0.098 4.098 4 Cl -0.030 7.030 5 C -0.080 4.080 6 N -0.158 5.158 7 C -0.075 4.075 8 C 0.030 3.970 9 N -0.309 5.309 10 C 0.360 3.640 11 O -0.393 6.393 12 C -0.137 4.137 13 C -0.236 4.236 14 C -0.115 4.115 15 C -0.223 4.223 16 C 0.096 3.904 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.147 4.147 20 N -0.415 5.415 21 Si 0.738 3.262 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.184 1.184 25 C -0.098 4.098 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.179 0.821 30 H 0.212 0.788 31 H 0.252 0.748 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.921 13.530 -1.153 14.133 hybrid contribution -1.087 -0.387 0.053 1.155 sum -5.008 13.143 -1.099 14.108 Atomic orbital electron populations 1.20807 0.89293 1.04119 1.03392 1.19833 0.97301 0.90188 1.02113 1.21705 0.93565 0.86895 1.07620 1.98352 1.78405 1.29383 1.96896 1.22706 0.89237 0.97394 0.98631 1.67973 1.39184 0.97641 1.10989 1.23926 0.90474 0.97728 0.95327 1.18807 0.93081 0.85489 0.99638 1.43692 1.16097 1.04903 1.66222 1.19143 0.85623 0.84102 0.75118 1.90614 1.18575 1.86294 1.43799 1.19276 0.95527 0.90853 1.08033 1.20326 0.94925 0.96543 1.11764 1.20447 0.97964 0.92810 1.00279 1.21205 0.97793 0.96520 1.06785 1.17613 0.91053 0.92734 0.88988 1.19593 0.91427 0.99690 1.38077 0.89993 1.25956 0.98087 0.97458 0.93218 1.69729 1.09702 1.32062 1.29986 0.86216 0.78930 0.80768 0.80322 1.19402 1.19913 1.18429 1.21687 1.00382 0.89659 0.98102 0.90006 0.90753 0.89999 0.82137 0.78798 0.74772 0.89253 0.88592 0.88306 0.90329 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.16 36.01 0.33 -0.81 16 2 C -0.08 -1.05 5.94 -104.10 -0.62 -1.67 16 3 C -0.07 -0.83 6.34 -39.38 -0.25 -1.08 16 4 Cl -0.06 -0.58 27.47 -51.86 -1.42 -2.01 16 5 C 0.08 1.02 10.98 -17.49 -0.19 0.82 16 6 N -0.45 -7.09 10.35 -13.05 -0.14 -7.22 16 7 C 0.09 1.44 9.97 -17.32 -0.17 1.27 16 8 C 0.13 1.98 6.51 -83.57 -0.54 1.43 16 9 N -0.66 -10.34 5.07 -10.62 -0.05 -10.40 16 10 C 0.57 11.26 7.63 -12.33 -0.09 11.17 16 11 O -0.52 -11.57 13.23 5.31 0.07 -11.50 16 12 C -0.13 -2.88 5.87 -105.04 -0.62 -3.50 16 13 C -0.22 -4.11 9.55 -38.91 -0.37 -4.48 16 14 C -0.10 -1.89 10.01 -39.73 -0.40 -2.29 16 15 C -0.20 -4.50 9.78 -38.81 -0.38 -4.88 16 16 C 0.10 2.45 5.54 -106.87 -0.59 1.86 16 17 C -0.46 -11.46 9.06 -37.73 -0.34 -11.80 16 18 H 0.08 1.94 7.87 -52.48 -0.41 1.53 16 19 C 0.07 1.72 5.23 -17.34 -0.09 1.63 16 20 N -0.79 -20.00 10.92 55.55 0.61 -19.39 16 21 Si 0.91 18.12 29.58 -169.99 -5.03 13.09 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 25 C -0.08 -1.94 8.20 -38.44 -0.32 -2.26 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.67 7.00 -51.93 -0.36 0.31 16 28 H 0.08 0.71 7.03 -51.93 -0.37 0.34 16 29 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.20 3.70 5.38 -52.49 -0.28 3.41 16 31 H 0.41 5.31 5.34 -40.82 -0.22 5.10 16 32 H 0.09 1.36 6.39 -52.49 -0.34 1.02 16 33 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 35 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 36 H 0.14 3.67 5.87 -52.49 -0.31 3.36 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -27.20 323.19 -8.85 -36.05 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -3.11 Total: 11.07 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -4.64 Total: -14.56 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.42 Total: -37.01 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.42 Total: -2.01 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.20 -8.85 -36.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274403188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.719 kcal (2) G-P(sol) polarization free energy of solvation -27.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds