Wall clock time and date at job start Tue Mar 31 2020 10:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38654 * 120.82358 * 2 1 4 4 Cl 1.73598 * 120.39205 * 359.75109 * 3 2 1 5 5 C 1.38356 * 119.21365 * 180.02562 * 3 2 1 6 6 N 1.31872 * 120.90466 * 0.02562 * 5 3 2 7 7 C 1.31790 * 121.81414 * 0.02562 * 6 5 3 8 8 C 1.38918 * 120.68534 * 359.97438 * 7 6 5 9 9 N 1.39867 * 120.48209 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00555 * 18.98035 * 9 8 7 11 11 O 1.21565 * 119.99424 * 5.51782 * 10 9 8 12 12 C 1.47854 * 120.00680 * 185.52374 * 10 9 8 13 13 C 1.39939 * 120.02203 * 359.71792 * 12 10 9 14 14 C 1.38320 * 120.35168 * 179.76678 * 13 12 10 15 15 C 1.37756 * 120.42034 * 0.51551 * 14 13 12 16 16 C 1.40755 * 120.03574 * 359.74483 * 15 14 13 17 17 C 1.41434 * 120.17591 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99902 * 330.73226 * 17 16 15 19 19 C 1.39934 * 120.00219 * 150.72708 * 17 16 15 20 20 N 1.30828 * 120.00189 * 348.41944 * 19 17 16 21 21 Si 1.86804 * 120.00087 * 168.40839 * 19 17 16 22 22 H 1.48503 * 109.46796 * 90.00465 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00179 * 21 19 17 24 24 H 1.48498 * 109.47328 * 330.00331 * 21 19 17 25 25 C 1.39008 * 120.02719 * 180.02562 * 12 10 9 26 26 H 1.08991 * 109.47585 * 89.99873 * 1 2 3 27 27 H 1.09003 * 109.46810 * 209.99714 * 1 2 3 28 28 H 1.08996 * 109.47269 * 329.99374 * 1 2 3 29 29 H 1.07996 * 119.54415 * 179.97438 * 5 3 2 30 30 H 1.08000 * 119.65763 * 179.97438 * 7 6 5 31 31 H 0.97008 * 120.00172 * 198.98249 * 9 8 7 32 32 H 1.08001 * 119.82340 * 0.03056 * 13 12 10 33 33 H 1.08000 * 119.79159 * 180.26141 * 14 13 12 34 34 H 1.07993 * 119.98623 * 179.76246 * 15 14 13 35 35 H 0.96999 * 120.00763 * 180.02562 * 20 19 17 36 36 H 1.07991 * 120.20576 * 359.94838 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1907 0.0000 4 17 1.3816 2.7122 -0.0065 5 6 3.6005 1.1518 -0.0005 6 7 4.2457 0.0017 -0.0016 7 6 3.6090 -1.1521 -0.0026 8 6 2.2205 -1.1956 -0.0021 9 7 1.5491 -2.4226 -0.0027 10 6 2.1939 -3.5439 0.3759 11 8 3.3262 -3.4757 0.8129 12 6 1.5242 -4.8570 0.2597 13 6 0.2186 -4.9355 -0.2378 14 6 -0.4126 -6.1607 -0.3540 15 6 0.2321 -7.3165 0.0284 16 6 1.5435 -7.2567 0.5362 17 6 2.2084 -8.4416 0.9292 18 1 1.6398 -9.2843 1.2940 19 6 3.6029 -8.5221 0.8453 20 7 4.2735 -7.6031 0.1994 21 14 4.5069 -9.9417 1.6559 22 1 4.6325 -11.0638 0.6913 23 1 5.8600 -9.4934 2.0727 24 1 3.7471 -10.3964 2.8480 25 6 2.1887 -6.0137 0.6506 26 1 -0.3634 0.0000 -1.0275 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 4.1592 2.0760 -0.0010 30 1 4.1725 -2.0735 -0.0038 31 1 0.6193 -2.4666 -0.2757 32 1 -0.2973 -4.0350 -0.5367 33 1 -1.4188 -6.2113 -0.7431 34 1 -0.2688 -8.2690 -0.0617 35 1 5.2402 -7.6590 0.1409 36 1 3.1947 -5.9575 1.0390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274403188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:11 Heat of formation + Delta-G solvation = -3.236375 kcal Electronic energy + Delta-G solvation = -22683.685861 eV Core-core repulsion = 19157.554344 eV Total energy + Delta-G solvation = -3526.131517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24354 -40.58475 -38.93000 -37.71454 -36.69094 -35.57325 -34.24428 -32.45056 -31.36353 -30.77255 -28.87650 -27.24429 -25.60608 -23.92712 -23.19317 -22.77357 -21.45721 -19.79319 -18.97030 -18.19428 -17.53546 -17.41675 -16.83450 -16.52384 -16.28780 -15.91066 -15.64972 -15.39610 -15.03832 -14.57498 -14.41610 -14.18714 -13.96033 -13.89891 -13.54755 -13.12613 -12.97337 -12.92590 -12.79789 -12.58023 -12.26929 -12.21816 -12.18139 -11.88713 -11.54032 -11.11610 -10.91441 -10.71864 -10.22752 -9.64755 -9.38078 -9.30028 -8.63235 -6.41257 -0.27858 -0.12670 0.38669 0.86452 0.98977 1.37687 1.45541 1.52066 1.82936 1.91950 2.19789 2.55083 2.78270 3.45968 3.48521 3.52959 3.64626 3.65132 3.89724 4.11390 4.38969 4.51088 4.53306 4.61184 4.64925 4.87100 4.91981 4.94211 5.07347 5.10024 5.14732 5.29852 5.47343 5.54021 5.79157 5.86651 6.02680 6.21385 6.30889 6.57630 6.73123 6.87966 6.91347 6.99490 8.33118 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.003082 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.084966 B = 9082.850371 C =10161.810826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.066 4.066 3 C -0.069 4.069 4 Cl -0.029 7.029 5 C 0.084 3.916 6 N -0.473 5.473 7 C 0.061 3.939 8 C 0.111 3.889 9 N -0.643 5.643 10 C 0.566 3.434 11 O -0.552 6.552 12 C -0.141 4.141 13 C -0.190 4.190 14 C -0.096 4.096 15 C -0.206 4.206 16 C 0.066 3.934 17 C -0.497 4.497 18 H 0.083 0.917 19 C 0.028 3.972 20 N -0.832 5.832 21 Si 0.982 3.018 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.255 1.255 25 C -0.116 4.116 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.190 0.810 30 H 0.163 0.837 31 H 0.429 0.571 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.110 0.890 35 H 0.285 0.715 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 15.753 -2.075 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.098 4.098 4 Cl 0.000 7.000 5 C -0.075 4.075 6 N -0.183 5.183 7 C -0.097 4.097 8 C 0.012 3.988 9 N -0.289 5.289 10 C 0.358 3.642 11 O -0.431 6.431 12 C -0.145 4.145 13 C -0.209 4.209 14 C -0.114 4.114 15 C -0.226 4.226 16 C 0.064 3.936 17 C -0.527 4.527 18 H 0.101 0.899 19 C -0.186 4.186 20 N -0.459 5.459 21 Si 0.803 3.197 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.179 1.179 25 C -0.137 4.137 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.207 0.793 30 H 0.180 0.820 31 H 0.270 0.730 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.116 15.904 -1.858 17.522 hybrid contribution -0.305 -0.765 0.195 0.847 sum -7.420 15.138 -1.663 16.941 Atomic orbital electron populations 1.20988 0.86517 1.05209 1.05152 1.20159 0.99093 0.89022 0.99432 1.21770 0.93515 0.88086 1.06460 1.98370 1.77693 1.27290 1.96654 1.23208 0.90181 0.97302 0.96829 1.67907 1.40088 0.98143 1.12138 1.23493 0.91485 0.97309 0.97454 1.18746 0.92546 0.86027 1.01513 1.43253 1.16362 1.03970 1.65273 1.18952 0.85191 0.84785 0.75246 1.90624 1.20166 1.86863 1.45486 1.19538 0.96686 0.90775 1.07452 1.20902 0.93361 0.98606 1.08039 1.20950 0.99752 0.91742 0.98946 1.21518 0.96760 0.98431 1.05901 1.17939 0.92637 0.92788 0.90224 1.19845 0.92379 1.00265 1.40225 0.89851 1.26784 0.98648 0.99834 0.93288 1.69842 1.09723 1.34228 1.32070 0.85198 0.77390 0.77690 0.79453 1.18410 1.19927 1.17896 1.21463 0.99784 0.91331 1.01076 0.87687 0.89929 0.88702 0.79350 0.82025 0.72981 0.84153 0.83961 0.87151 0.90434 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.16 71.24 0.65 -1.11 16 2 C -0.07 -1.47 5.94 -19.52 -0.12 -1.59 16 3 C -0.07 -1.47 6.34 22.40 0.14 -1.33 16 4 Cl -0.03 -0.46 27.47 -2.72 -0.07 -0.54 16 5 C 0.08 2.01 10.98 84.71 0.93 2.94 16 6 N -0.47 -15.05 10.35 -195.21 -2.02 -17.07 16 7 C 0.06 2.14 9.97 84.86 0.85 2.99 16 8 C 0.11 3.26 6.51 38.26 0.25 3.51 16 9 N -0.64 -19.13 5.07 -305.79 -1.55 -20.68 16 10 C 0.57 22.96 7.63 86.79 0.66 23.62 16 11 O -0.55 -26.54 13.23 -3.92 -0.05 -26.59 16 12 C -0.14 -6.15 5.87 -20.14 -0.12 -6.26 16 13 C -0.19 -6.63 9.55 22.70 0.22 -6.42 16 14 C -0.10 -3.44 10.01 22.18 0.22 -3.22 16 15 C -0.21 -9.01 9.78 22.77 0.22 -8.79 16 16 C 0.07 3.43 5.54 -21.32 -0.12 3.31 16 17 C -0.50 -26.20 9.06 23.47 0.21 -25.99 16 18 H 0.08 4.15 7.87 -2.91 -0.02 4.12 16 19 C 0.03 1.45 5.23 85.25 0.45 1.89 16 20 N -0.83 -45.38 10.92 21.82 0.24 -45.14 16 21 Si 0.98 39.03 29.58 68.60 2.03 41.06 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 25 C -0.12 -6.09 8.20 23.01 0.19 -5.90 16 26 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 1.10 7.00 -2.39 -0.02 1.09 16 28 H 0.09 1.18 7.03 -2.39 -0.02 1.16 16 29 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.16 6.74 5.38 -2.91 -0.02 6.72 16 31 H 0.43 9.48 5.34 -92.70 -0.49 8.99 16 32 H 0.14 3.45 6.39 -2.91 -0.02 3.43 16 33 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 34 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 36 H 0.10 5.94 5.87 -2.92 -0.02 5.93 16 Total: -1.00 -65.64 323.19 3.87 -61.77 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.66 Total: 29.52 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 4.64 Total: -22.34 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -3.33 Total: -82.89 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.07 Total: -0.54 kcal Total: -65.64 3.87 -61.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274403188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.534 kcal (2) G-P(sol) polarization free energy of solvation -65.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds