Wall clock time and date at job start Tue Mar 31 2020 11:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00253 * 2 1 4 4 H 1.48504 * 109.47131 * 239.99678 * 3 2 1 5 5 H 1.48504 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47340 * 119.99819 * 3 2 1 7 7 C 1.37880 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46901 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47217 * 180.02562 * 11 10 9 13 13 C 1.34916 * 117.00078 * 180.02562 * 12 11 10 14 14 O 1.21646 * 120.00045 * 359.97438 * 13 12 11 15 15 C 1.46306 * 120.00213 * 179.97438 * 13 12 11 16 16 C 1.36750 * 125.18168 * 179.71451 * 15 13 12 17 17 C 1.36767 * 114.70874 * 179.78955 * 16 15 13 18 18 C 1.36498 * 114.79006 * 0.50453 * 17 16 15 19 19 C 1.47785 * 125.14652 * 179.70444 * 18 17 16 20 20 C 1.39593 * 120.14915 * 359.72123 * 19 18 17 21 21 C 1.37948 * 119.85253 * 179.72286 * 20 19 18 22 22 C 1.38366 * 120.14401 * 0.58442 * 21 20 19 23 23 C 1.38356 * 120.29651 * 359.69389 * 22 21 20 24 24 C 1.37956 * 120.15032 * 0.02562 * 23 22 21 25 25 S 1.75829 * 109.70457 * 359.72979 * 18 17 16 26 26 H 0.96999 * 119.99869 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47046 * 59.99352 * 9 7 2 28 28 H 1.09002 * 109.46706 * 299.99665 * 9 7 2 29 29 H 1.08999 * 109.46979 * 59.99963 * 10 9 7 30 30 H 1.08994 * 109.47593 * 299.99863 * 10 9 7 31 31 H 1.08999 * 109.47200 * 60.00262 * 11 10 9 32 32 H 1.09002 * 109.46863 * 300.00100 * 11 10 9 33 33 H 1.07993 * 122.64241 * 359.97438 * 16 15 13 34 34 H 1.08003 * 122.60615 * 180.25621 * 17 16 15 35 35 H 1.08006 * 120.07070 * 0.02562 * 20 19 18 36 36 H 1.08000 * 119.93110 * 180.32342 * 21 20 19 37 37 H 1.08003 * 119.84755 * 179.71972 * 22 21 20 38 38 H 1.08003 * 119.92469 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.07448 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4086 -6.0733 0.0018 13 6 1.8929 -7.3200 0.0019 14 8 0.6869 -7.4794 0.0019 15 6 2.7840 -8.4804 0.0019 16 6 2.3775 -9.7860 0.0075 17 6 3.3938 -10.7012 0.0018 18 6 4.6484 -10.1634 0.0022 19 6 5.9064 -10.9388 0.0029 20 6 5.8699 -12.3343 0.0090 21 6 7.0480 -13.0520 0.0039 22 6 8.2639 -12.3917 0.0049 23 6 8.3072 -11.0088 0.0046 24 6 7.1366 -10.2789 0.0040 25 16 4.5410 -8.4084 0.0026 26 1 -0.4850 0.8400 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6043 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 0.8531 -5.0451 -0.8886 32 1 0.8537 -5.0445 0.8914 33 1 1.3361 -10.0719 0.0130 34 1 3.2175 -11.7668 0.0011 35 1 4.9214 -12.8508 0.0129 36 1 7.0212 -14.1317 0.0033 37 1 9.1833 -12.9584 0.0054 38 1 9.2597 -10.4996 0.0050 39 1 7.1718 -9.1995 0.0034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317813425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:33 Heat of formation + Delta-G solvation = -61.014022 kcal Electronic energy + Delta-G solvation = -21467.820848 eV Core-core repulsion = 18044.767954 eV Total energy + Delta-G solvation = -3423.052894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63576 -40.23604 -38.68388 -37.70280 -35.96523 -33.76700 -33.27532 -31.91474 -30.15443 -28.81910 -26.52797 -25.19354 -23.84487 -22.98731 -22.70912 -22.24065 -19.92793 -19.78474 -18.68684 -18.12337 -17.87351 -17.30235 -17.06495 -16.51010 -16.19031 -15.77707 -15.63914 -15.31901 -14.67422 -14.60093 -14.31492 -14.14657 -13.96528 -13.85670 -13.80673 -13.34670 -13.33160 -12.82298 -12.55516 -12.52477 -12.37392 -12.12600 -12.12079 -11.98854 -11.69754 -11.51673 -11.45736 -11.27986 -10.77807 -10.57811 -9.91247 -9.73625 -9.06943 -8.22492 -6.34328 -1.09498 0.24875 0.36243 0.46259 0.73234 1.24292 1.40368 1.44248 1.49901 1.53743 1.82001 2.40728 2.90306 3.11059 3.42877 3.63852 3.91987 3.94179 4.00314 4.02636 4.17555 4.23336 4.31328 4.35197 4.54494 4.59004 4.73414 4.75107 4.79180 4.94953 5.03690 5.05721 5.08846 5.22245 5.29472 5.46499 5.51693 5.52040 5.58450 5.60916 5.78139 6.01479 6.17195 6.49819 6.80835 7.34947 8.89475 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.022612 B = 0.002125 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.982203 B =13175.662487 C =14387.894554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.077 3.923 12 O -0.350 6.350 13 C 0.532 3.468 14 O -0.531 6.531 15 C -0.290 4.290 16 C -0.029 4.029 17 C -0.147 4.147 18 C -0.114 4.114 19 C -0.048 4.048 20 C -0.098 4.098 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.123 4.123 24 C -0.123 4.123 25 S 0.219 5.781 26 H 0.265 0.735 27 H -0.003 1.003 28 H -0.003 1.003 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.163 0.837 34 H 0.185 0.815 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.435 -30.802 0.023 35.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.011 4.011 10 C -0.130 4.130 11 C 0.003 3.997 12 O -0.267 6.267 13 C 0.378 3.622 14 O -0.423 6.423 15 C -0.408 4.408 16 C -0.063 4.063 17 C -0.175 4.175 18 C -0.234 4.234 19 C -0.050 4.050 20 C -0.118 4.118 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.141 4.141 24 C -0.142 4.142 25 S 0.491 5.509 26 H 0.073 0.927 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.181 0.819 34 H 0.202 0.798 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 17.963 -29.401 0.024 34.454 hybrid contribution -1.525 0.322 -0.001 1.559 sum 16.438 -29.079 0.023 33.403 Atomic orbital electron populations 1.70097 1.07871 1.28011 1.51278 1.26032 0.95832 1.03572 0.94561 0.85421 0.78182 0.77682 0.79288 1.19039 1.20869 1.19029 1.21579 0.93731 0.91814 1.51106 0.91670 1.18933 0.94229 0.92399 0.95534 1.21474 0.98762 0.90194 1.02592 1.22827 0.91228 0.83665 1.01964 1.86137 1.41829 1.14897 1.83804 1.20125 0.86595 0.83042 0.72403 1.90862 1.16585 1.86940 1.47894 1.23397 0.98032 0.95043 1.24297 1.20775 1.02656 0.88934 0.93947 1.20629 0.88941 1.02572 1.05376 1.24227 0.97439 0.96612 1.05109 1.18183 0.89418 0.93569 1.03852 1.21524 1.00372 0.91695 0.98225 1.21485 0.91757 1.01526 0.99090 1.21697 0.99322 0.94422 0.97561 1.21372 0.98331 0.94883 0.99512 1.21450 0.92329 1.00205 1.00229 1.84348 0.97909 1.01271 1.67374 0.92662 0.98427 0.98416 0.91429 0.91421 0.91907 0.91913 0.81926 0.79778 0.83509 0.82944 0.83318 0.83832 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.99 5.52 30.59 0.17 -3.82 16 11 C 0.08 3.04 5.38 71.98 0.39 3.42 16 12 O -0.35 -12.68 9.95 -58.31 -0.58 -13.26 16 13 C 0.53 18.29 7.91 69.92 0.55 18.85 16 14 O -0.53 -20.70 16.58 19.36 0.32 -20.38 16 15 C -0.29 -7.76 6.43 24.02 0.15 -7.61 16 16 C -0.03 -0.61 9.88 21.58 0.21 -0.40 16 17 C -0.15 -2.29 9.66 21.52 0.21 -2.08 16 18 C -0.11 -2.02 6.41 24.39 0.16 -1.86 16 19 C -0.05 -0.73 5.87 -20.10 -0.12 -0.85 16 20 C -0.10 -1.06 9.54 22.53 0.22 -0.84 16 21 C -0.12 -0.99 10.03 22.23 0.22 -0.77 16 22 C -0.11 -0.94 10.04 22.33 0.22 -0.72 16 23 C -0.12 -1.35 10.03 22.23 0.22 -1.12 16 24 C -0.12 -1.80 9.60 22.53 0.22 -1.58 16 25 S 0.22 4.82 22.03 -56.49 -1.24 3.58 16 26 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 27 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.06 2.50 8.13 -2.39 -0.02 2.48 16 32 H 0.06 2.50 8.13 -2.39 -0.02 2.48 16 33 H 0.16 3.07 8.03 -2.91 -0.02 3.05 16 34 H 0.19 1.54 6.91 -2.91 -0.02 1.52 16 35 H 0.15 0.93 6.76 -2.91 -0.02 0.91 16 36 H 0.15 0.45 8.06 -2.91 -0.02 0.42 16 37 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 38 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.12 1.75 7.27 -2.91 -0.02 1.73 16 Total: -1.00 -71.21 356.58 5.53 -65.68 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.06 Total: 3.48 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 3.67 Total: -28.49 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.28 Total: -57.06 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.26 Total: -33.65 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.24 Total: 3.58 kcal Total: -71.21 5.53 -65.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317813425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.665 kcal (2) G-P(sol) polarization free energy of solvation -71.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds