Wall clock time and date at job start Tue Mar 31 2020 10:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38224 * 119.52553 * 2 1 4 4 C 1.38567 * 119.25667 * 179.77236 * 3 2 1 5 5 C 1.39209 * 118.37720 * 0.49158 * 4 3 2 6 6 N 1.39922 * 120.49472 * 179.72974 * 5 4 3 7 7 C 1.34776 * 120.00177 * 24.58533 * 6 5 4 8 8 O 1.21566 * 119.99644 * 5.63690 * 7 6 5 9 9 C 1.47850 * 120.00125 * 185.64255 * 7 6 5 10 10 C 1.39926 * 120.02904 * 359.71969 * 9 7 6 11 11 C 1.38329 * 120.35833 * 179.69348 * 10 9 7 12 12 C 1.37751 * 120.41215 * 0.61173 * 11 10 9 13 13 C 1.40750 * 120.04214 * 359.67020 * 12 11 10 14 14 C 1.41438 * 120.17913 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99729 * 34.86225 * 14 13 12 16 16 C 1.39931 * 120.00440 * 214.86685 * 14 13 12 17 17 N 1.30835 * 119.99807 * 355.25395 * 16 14 13 18 18 Si 1.86804 * 120.00401 * 175.25540 * 16 14 13 19 19 H 1.48495 * 109.47167 * 90.00132 * 18 16 14 20 20 H 1.48498 * 109.47074 * 209.99983 * 18 16 14 21 21 H 1.48500 * 109.46804 * 329.99572 * 18 16 14 22 22 C 1.39014 * 120.02421 * 179.97438 * 9 7 6 23 23 C 1.39025 * 119.01154 * 359.75121 * 5 4 3 24 24 Cl 1.73604 * 119.68354 * 179.97438 * 23 5 4 25 25 N 1.31890 * 120.63442 * 359.97438 * 23 5 4 26 26 H 1.09003 * 109.47509 * 269.72319 * 1 2 3 27 27 H 1.09001 * 109.47552 * 29.73329 * 1 2 3 28 28 H 1.08999 * 109.46865 * 149.72992 * 1 2 3 29 29 H 1.07997 * 120.37350 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.80457 * 180.21925 * 4 3 2 31 31 H 0.96999 * 120.00272 * 204.58373 * 6 5 4 32 32 H 1.07999 * 119.81947 * 359.97438 * 10 9 7 33 33 H 1.07994 * 119.79273 * 180.28305 * 11 10 9 34 34 H 1.07998 * 119.97948 * 179.69437 * 12 11 10 35 35 H 0.97000 * 119.99774 * 180.02562 * 17 16 14 36 36 H 1.08001 * 120.20572 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.2027 0.0000 4 6 3.5739 1.1962 0.0048 5 6 4.2297 -0.0316 -0.0010 6 7 5.6278 -0.0899 -0.0022 7 6 6.3456 0.9404 0.4874 8 8 5.7809 1.8744 1.0229 9 6 7.8196 0.9347 0.3732 10 6 8.4705 -0.1427 -0.2379 11 6 9.8489 -0.1521 -0.3540 12 6 10.5976 0.8926 0.1415 13 6 9.9610 1.9823 0.7647 14 6 10.7269 3.0568 1.2740 15 1 11.6269 3.3677 0.7642 16 6 10.3187 3.7170 2.4382 17 7 9.1815 3.4028 3.0039 18 14 11.3972 5.0470 3.1850 19 1 11.0302 6.3645 2.6067 20 1 11.1967 5.0789 4.6560 21 1 12.8221 4.7545 2.8859 22 6 8.5605 1.9974 0.8777 23 6 3.4750 -1.1992 -0.0061 24 17 4.2750 -2.7399 -0.0141 25 7 2.1571 -1.1475 -0.0049 26 1 -0.3634 -0.0050 1.0277 27 1 -0.3634 0.8923 -0.5097 28 1 -0.3633 -0.8876 -0.5180 29 1 1.6466 2.1371 -0.0004 30 1 4.1313 2.1213 0.0085 31 1 6.0803 -0.8717 -0.3554 32 1 7.8932 -0.9693 -0.6250 33 1 10.3415 -0.9862 -0.8314 34 1 11.6737 0.8757 0.0514 35 1 8.8983 3.8607 3.8107 36 1 8.0627 2.8294 1.3534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338400667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:19 Heat of formation + Delta-G solvation = 9.868022 kcal Electronic energy + Delta-G solvation = -22591.405604 eV Core-core repulsion = 19065.842336 eV Total energy + Delta-G solvation = -3525.563267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86392 -39.25542 -37.26713 -36.76803 -35.04444 -33.77136 -32.26223 -31.91922 -30.14668 -29.56542 -27.21947 -25.38914 -23.76567 -23.41453 -21.85070 -21.03422 -19.79050 -18.32264 -17.48109 -16.93708 -16.34385 -15.84198 -15.29595 -15.00321 -14.73290 -14.51187 -14.24793 -14.03510 -13.38171 -13.28786 -13.06783 -12.81507 -12.66516 -12.56599 -12.23813 -11.82003 -11.61075 -11.37959 -11.24134 -11.17865 -10.87317 -10.78189 -10.54625 -10.21295 -9.91416 -9.85646 -9.60240 -9.34870 -9.10877 -8.14133 -7.77515 -7.52782 -6.73928 -4.55350 0.80084 1.12735 1.72929 1.98577 2.71931 3.03620 3.05385 3.09689 3.13953 3.41535 3.73438 3.89567 4.29880 4.57545 4.63746 4.78162 4.91294 5.18948 5.40507 5.42510 5.44945 5.49499 5.73983 5.82900 5.95757 6.06930 6.10539 6.24800 6.55604 6.67795 6.81165 6.88796 7.15391 7.24038 7.45644 7.54069 7.65612 7.70747 7.87971 8.07216 8.40457 8.48381 8.71951 8.76481 10.16985 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.003370 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.258708 B = 8306.945744 C = 9453.204520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.109 3.891 3 C -0.142 4.142 4 C -0.079 4.079 5 C 0.135 3.865 6 N -0.668 5.668 7 C 0.568 3.432 8 O -0.519 6.519 9 C -0.139 4.139 10 C -0.203 4.203 11 C -0.104 4.104 12 C -0.193 4.193 13 C 0.093 3.907 14 C -0.462 4.462 15 H 0.080 0.920 16 C 0.069 3.931 17 N -0.803 5.803 18 Si 0.918 3.082 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.074 4.074 23 C 0.136 3.864 24 Cl -0.033 7.033 25 N -0.457 5.457 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.169 0.831 31 H 0.415 0.585 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.283 0.717 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.457 -5.190 -5.304 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.031 4.031 3 C -0.162 4.162 4 C -0.107 4.107 5 C 0.034 3.966 6 N -0.313 5.313 7 C 0.361 3.639 8 O -0.395 6.395 9 C -0.142 4.142 10 C -0.223 4.223 11 C -0.123 4.123 12 C -0.213 4.213 13 C 0.090 3.910 14 C -0.493 4.493 15 H 0.098 0.902 16 C -0.148 4.148 17 N -0.429 5.429 18 Si 0.743 3.257 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.187 1.187 22 C -0.094 4.094 23 C -0.031 4.031 24 Cl -0.004 7.004 25 N -0.169 5.169 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.162 0.838 30 H 0.186 0.814 31 H 0.254 0.746 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.289 -5.344 -4.712 14.205 hybrid contribution 1.279 0.524 0.323 1.419 sum -11.010 -4.820 -4.389 12.795 Atomic orbital electron populations 1.20655 0.88209 1.03435 1.03140 1.21050 0.96876 0.87131 0.98021 1.21997 0.94156 0.99401 1.00676 1.21984 0.94315 0.98084 0.96334 1.18406 0.84809 0.93102 1.00254 1.43741 1.02915 1.22704 1.61961 1.19099 0.88538 0.80515 0.75759 1.90673 1.72184 1.34914 1.41720 1.19376 0.89044 0.99037 1.06776 1.20431 0.94687 0.98586 1.08624 1.20472 0.93383 0.97977 1.00424 1.21316 0.98150 0.94836 1.06953 1.17660 0.91392 0.91974 0.89947 1.19535 1.08767 1.13050 1.07905 0.90184 1.25937 0.95117 0.96809 0.96936 1.69705 1.18712 1.36740 1.17703 0.86142 0.80726 0.80478 0.78377 1.19364 1.20166 1.18654 1.21972 0.93803 0.97103 0.96564 1.21237 0.89793 0.86123 1.05959 1.98391 1.76941 1.28350 1.96746 1.66696 1.07009 1.30309 1.12877 0.90438 0.90520 0.90529 0.83802 0.81408 0.74613 0.89111 0.88480 0.88211 0.90618 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.01 0.37 -0.44 16 2 C 0.11 1.33 6.78 -82.57 -0.56 0.77 16 3 C -0.14 -1.73 9.73 -39.47 -0.38 -2.11 16 4 C -0.08 -1.21 8.82 -39.10 -0.34 -1.55 16 5 C 0.13 2.17 6.45 -83.51 -0.54 1.63 16 6 N -0.67 -11.29 5.14 -10.59 -0.05 -11.35 16 7 C 0.57 11.69 7.59 -12.33 -0.09 11.60 16 8 O -0.52 -11.77 13.53 5.31 0.07 -11.70 16 9 C -0.14 -3.09 5.87 -105.04 -0.62 -3.71 16 10 C -0.20 -4.04 9.55 -38.92 -0.37 -4.41 16 11 C -0.10 -2.10 10.01 -39.73 -0.40 -2.49 16 12 C -0.19 -4.34 9.78 -38.81 -0.38 -4.71 16 13 C 0.09 2.34 5.55 -106.87 -0.59 1.75 16 14 C -0.46 -11.72 9.04 -37.73 -0.34 -12.06 16 15 H 0.08 1.93 7.85 -52.48 -0.41 1.51 16 16 C 0.07 1.68 5.42 -17.34 -0.09 1.59 16 17 N -0.80 -20.67 10.60 55.55 0.59 -20.08 16 18 Si 0.92 18.42 29.56 -169.99 -5.03 13.40 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 C -0.07 -1.87 8.21 -38.44 -0.32 -2.19 16 23 C 0.14 2.07 7.29 -17.24 -0.13 1.94 16 24 Cl -0.03 -0.44 27.95 -51.86 -1.45 -1.89 16 25 N -0.46 -6.64 10.24 -6.46 -0.07 -6.71 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.17 2.78 5.89 -52.49 -0.31 2.47 16 31 H 0.41 6.25 5.81 -40.82 -0.24 6.01 16 32 H 0.09 1.50 6.39 -52.49 -0.34 1.16 16 33 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 35 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 36 H 0.15 4.00 5.72 -52.49 -0.30 3.70 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -28.11 327.10 -9.06 -37.17 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -3.26 Total: 10.63 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -4.79 Total: -14.41 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.47 Total: -38.13 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.07 Total: -11.70 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.45 Total: -1.89 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.11 -9.06 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338400667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.038 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds