Wall clock time and date at job start Tue Mar 31 2020 10:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38224 * 119.52553 * 2 1 4 4 C 1.38567 * 119.25667 * 179.77236 * 3 2 1 5 5 C 1.39209 * 118.37720 * 0.49158 * 4 3 2 6 6 N 1.39922 * 120.49472 * 179.72974 * 5 4 3 7 7 C 1.34776 * 120.00177 * 24.58533 * 6 5 4 8 8 O 1.21566 * 119.99644 * 5.63690 * 7 6 5 9 9 C 1.47850 * 120.00125 * 185.64255 * 7 6 5 10 10 C 1.39926 * 120.02904 * 359.71969 * 9 7 6 11 11 C 1.38329 * 120.35833 * 179.69348 * 10 9 7 12 12 C 1.37751 * 120.41215 * 0.61173 * 11 10 9 13 13 C 1.40750 * 120.04214 * 359.67020 * 12 11 10 14 14 C 1.41438 * 120.17913 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99729 * 34.86225 * 14 13 12 16 16 C 1.39931 * 120.00440 * 214.86685 * 14 13 12 17 17 N 1.30835 * 119.99807 * 355.25395 * 16 14 13 18 18 Si 1.86804 * 120.00401 * 175.25540 * 16 14 13 19 19 H 1.48495 * 109.47167 * 90.00132 * 18 16 14 20 20 H 1.48498 * 109.47074 * 209.99983 * 18 16 14 21 21 H 1.48500 * 109.46804 * 329.99572 * 18 16 14 22 22 C 1.39014 * 120.02421 * 179.97438 * 9 7 6 23 23 C 1.39025 * 119.01154 * 359.75121 * 5 4 3 24 24 Cl 1.73604 * 119.68354 * 179.97438 * 23 5 4 25 25 N 1.31890 * 120.63442 * 359.97438 * 23 5 4 26 26 H 1.09003 * 109.47509 * 269.72319 * 1 2 3 27 27 H 1.09001 * 109.47552 * 29.73329 * 1 2 3 28 28 H 1.08999 * 109.46865 * 149.72992 * 1 2 3 29 29 H 1.07997 * 120.37350 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.80457 * 180.21925 * 4 3 2 31 31 H 0.96999 * 120.00272 * 204.58373 * 6 5 4 32 32 H 1.07999 * 119.81947 * 359.97438 * 10 9 7 33 33 H 1.07994 * 119.79273 * 180.28305 * 11 10 9 34 34 H 1.07998 * 119.97948 * 179.69437 * 12 11 10 35 35 H 0.97000 * 119.99774 * 180.02562 * 17 16 14 36 36 H 1.08001 * 120.20572 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.2027 0.0000 4 6 3.5739 1.1962 0.0048 5 6 4.2297 -0.0316 -0.0010 6 7 5.6278 -0.0899 -0.0022 7 6 6.3456 0.9404 0.4874 8 8 5.7809 1.8744 1.0229 9 6 7.8196 0.9347 0.3732 10 6 8.4705 -0.1427 -0.2379 11 6 9.8489 -0.1521 -0.3540 12 6 10.5976 0.8926 0.1415 13 6 9.9610 1.9823 0.7647 14 6 10.7269 3.0568 1.2740 15 1 11.6269 3.3677 0.7642 16 6 10.3187 3.7170 2.4382 17 7 9.1815 3.4028 3.0039 18 14 11.3972 5.0470 3.1850 19 1 11.0302 6.3645 2.6067 20 1 11.1967 5.0789 4.6560 21 1 12.8221 4.7545 2.8859 22 6 8.5605 1.9974 0.8777 23 6 3.4750 -1.1992 -0.0061 24 17 4.2750 -2.7399 -0.0141 25 7 2.1571 -1.1475 -0.0049 26 1 -0.3634 -0.0050 1.0277 27 1 -0.3634 0.8923 -0.5097 28 1 -0.3633 -0.8876 -0.5180 29 1 1.6466 2.1371 -0.0004 30 1 4.1313 2.1213 0.0085 31 1 6.0803 -0.8717 -0.3554 32 1 7.8932 -0.9693 -0.6250 33 1 10.3415 -0.9862 -0.8314 34 1 11.6737 0.8757 0.0514 35 1 8.8983 3.8607 3.8107 36 1 8.0627 2.8294 1.3534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338400667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:18 Heat of formation + Delta-G solvation = -5.598885 kcal Electronic energy + Delta-G solvation = -22592.076299 eV Core-core repulsion = 19065.842336 eV Total energy + Delta-G solvation = -3526.233963 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.13280 -40.66217 -38.96035 -37.87069 -36.45435 -35.54420 -33.36274 -33.11925 -31.72387 -31.30801 -28.31825 -27.16901 -24.92347 -24.80270 -23.17582 -22.73923 -21.33961 -19.84355 -19.00140 -18.12238 -17.72560 -17.32514 -16.87332 -16.48946 -16.13216 -15.89640 -15.63659 -15.25776 -15.05521 -14.69289 -14.37329 -14.20249 -13.91789 -13.59500 -13.48528 -13.02491 -12.90205 -12.83464 -12.70805 -12.54294 -12.44447 -12.20882 -12.02234 -11.94552 -11.58405 -11.29000 -11.09912 -10.78029 -10.48284 -9.63008 -9.31915 -9.24045 -8.53643 -6.45313 -0.35163 -0.02802 0.34581 0.61881 0.98668 1.38646 1.45223 1.53160 1.75484 1.90723 2.21861 2.50989 2.79804 3.31461 3.52115 3.59633 3.64521 3.80962 4.05347 4.24287 4.34427 4.50480 4.66185 4.81338 4.84009 4.84464 4.93660 5.03698 5.08517 5.12330 5.23936 5.33380 5.47826 5.54478 5.78095 5.83184 6.04328 6.18271 6.28085 6.57352 6.58989 6.88501 6.91795 6.94979 8.38350 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.003370 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.258708 B = 8306.945744 C = 9453.204520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.114 3.886 3 C -0.133 4.133 4 C -0.094 4.094 5 C 0.107 3.893 6 N -0.652 5.652 7 C 0.568 3.432 8 O -0.549 6.549 9 C -0.148 4.148 10 C -0.184 4.184 11 C -0.102 4.102 12 C -0.196 4.196 13 C 0.060 3.940 14 C -0.497 4.497 15 H 0.082 0.918 16 C 0.024 3.976 17 N -0.843 5.843 18 Si 0.988 3.012 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.254 1.254 22 C -0.109 4.109 23 C 0.133 3.867 24 Cl -0.023 7.023 25 N -0.472 5.472 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.180 0.820 30 H 0.149 0.851 31 H 0.423 0.577 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.283 0.717 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 -6.596 -6.277 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C -0.153 4.153 4 C -0.122 4.122 5 C 0.007 3.993 6 N -0.298 5.298 7 C 0.361 3.639 8 O -0.428 6.428 9 C -0.151 4.151 10 C -0.204 4.204 11 C -0.120 4.120 12 C -0.215 4.215 13 C 0.058 3.942 14 C -0.528 4.528 15 H 0.100 0.900 16 C -0.188 4.188 17 N -0.470 5.470 18 Si 0.809 3.191 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.129 4.129 23 C -0.033 4.033 24 Cl 0.006 6.994 25 N -0.184 5.184 26 H 0.109 0.891 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.197 0.803 30 H 0.167 0.833 31 H 0.263 0.737 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.495 -6.796 -5.719 16.156 hybrid contribution 1.453 0.786 0.493 1.724 sum -12.042 -6.010 -5.226 14.438 Atomic orbital electron populations 1.20818 0.84941 1.05064 1.04414 1.21826 0.98876 0.86417 0.95372 1.22366 0.92869 1.01120 0.98896 1.21996 0.95821 0.97222 0.97126 1.18524 0.84108 0.93990 1.02652 1.43372 1.03485 1.21741 1.61216 1.18878 0.88157 0.81021 0.75872 1.90658 1.72542 1.36347 1.43246 1.19620 0.90168 0.98977 1.06327 1.20922 0.95208 0.98282 1.05987 1.20944 0.93429 0.98284 0.99339 1.21605 0.99197 0.94708 1.06011 1.17994 0.91662 0.93342 0.91188 1.19805 1.09427 1.14517 1.09056 0.89963 1.26819 0.96177 0.98777 0.97034 1.69849 1.20503 1.38359 1.18288 0.85094 0.79048 0.77504 0.77406 1.18870 1.19793 1.17779 1.21738 0.94300 0.97845 0.99041 1.21297 0.90133 0.86251 1.05667 1.98386 1.76865 1.27503 1.96681 1.66848 1.06553 1.31396 1.13583 0.89111 0.87691 0.90180 0.80314 0.83323 0.73671 0.84987 0.84057 0.86845 0.90663 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.17 71.24 0.72 -0.50 16 2 C 0.11 2.51 6.78 42.55 0.29 2.80 16 3 C -0.13 -2.96 9.73 22.35 0.22 -2.75 16 4 C -0.09 -2.84 8.82 22.58 0.20 -2.64 16 5 C 0.11 3.38 6.45 38.27 0.25 3.63 16 6 N -0.65 -21.83 5.14 -305.68 -1.57 -23.40 16 7 C 0.57 23.99 7.59 86.79 0.66 24.65 16 8 O -0.55 -26.25 13.53 -3.92 -0.05 -26.30 16 9 C -0.15 -6.68 5.87 -20.14 -0.12 -6.80 16 10 C -0.18 -6.97 9.55 22.70 0.22 -6.75 16 11 C -0.10 -3.84 10.01 22.18 0.22 -3.62 16 12 C -0.20 -8.71 9.78 22.77 0.22 -8.49 16 13 C 0.06 3.15 5.55 -21.32 -0.12 3.03 16 14 C -0.50 -26.33 9.04 23.47 0.21 -26.12 16 15 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 16 C 0.02 1.23 5.42 85.25 0.46 1.69 16 17 N -0.84 -46.06 10.60 21.82 0.23 -45.82 16 18 Si 0.99 39.01 29.56 68.60 2.03 41.04 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 22 C -0.11 -5.78 8.21 23.01 0.19 -5.59 16 23 C 0.13 3.87 7.29 84.87 0.62 4.49 16 24 Cl -0.02 -0.58 27.95 -2.72 -0.08 -0.66 16 25 N -0.47 -12.80 10.24 -174.36 -1.79 -14.59 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 0.79 8.07 -2.39 -0.02 0.77 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 29 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.15 5.12 5.89 -2.91 -0.02 5.10 16 31 H 0.42 12.10 5.81 -92.71 -0.54 11.57 16 32 H 0.13 3.86 6.39 -2.91 -0.02 3.84 16 33 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 35 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 36 H 0.11 6.74 5.72 -2.91 -0.02 6.72 16 Total: -1.00 -65.38 327.10 3.62 -61.75 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.61 Total: 30.94 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.24 Total: -22.96 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -3.13 Total: -83.81 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.05 Total: -26.30 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -65.38 3.62 -61.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338400667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.154 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds