Wall clock time and date at job start Tue Mar 31 2020 10:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37939 * 120.06791 * 2 1 4 4 C 1.38384 * 120.18521 * 180.27562 * 3 2 1 5 5 C 1.38318 * 120.31565 * 359.48044 * 4 3 2 6 6 C 1.38106 * 120.13472 * 0.26193 * 5 4 3 7 7 Cl 1.73600 * 120.09124 * 180.02562 * 6 5 4 8 8 C 1.39607 * 120.07263 * 179.76208 * 2 1 3 9 9 C 1.47730 * 120.15388 * 359.95624 * 8 2 1 10 10 O 1.21560 * 120.00360 * 270.02811 * 9 8 2 11 11 N 1.34778 * 119.99780 * 90.02414 * 9 8 2 12 12 C 1.39382 * 120.00235 * 175.30185 * 11 9 8 13 13 C 1.38618 * 119.58718 * 186.38645 * 12 11 9 14 14 C 1.40799 * 118.79944 * 179.97438 * 13 12 11 15 15 C 1.41546 * 120.99817 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99678 * 201.18682 * 15 14 13 17 17 C 1.40033 * 119.99613 * 21.19125 * 15 14 13 18 18 N 1.30735 * 120.00557 * 12.81378 * 17 15 14 19 19 Si 1.86806 * 119.99612 * 192.81504 * 17 15 14 20 20 H 1.48495 * 109.46994 * 89.99728 * 19 17 15 21 21 H 1.48499 * 109.47055 * 209.99763 * 19 17 15 22 22 H 1.48505 * 109.47012 * 330.00053 * 19 17 15 23 23 C 1.41180 * 118.00675 * 0.02562 * 14 13 12 24 24 C 1.37588 * 119.02094 * 359.97438 * 23 14 13 25 25 N 1.32088 * 121.11081 * 359.74735 * 24 23 14 26 26 H 1.08998 * 109.46918 * 270.23785 * 1 2 3 27 27 H 1.09000 * 109.46733 * 30.24166 * 1 2 3 28 28 H 1.08999 * 109.46688 * 150.23706 * 1 2 3 29 29 H 1.07997 * 119.91016 * 0.03501 * 3 2 1 30 30 H 1.07999 * 119.84287 * 179.76457 * 4 3 2 31 31 H 1.08004 * 119.93135 * 180.23499 * 5 4 3 32 32 H 0.96998 * 119.99894 * 355.30331 * 11 9 8 33 33 H 1.08004 * 120.60048 * 0.02562 * 13 12 11 34 34 H 0.97000 * 120.00350 * 180.02562 * 18 17 15 35 35 H 1.07998 * 120.48886 * 180.02562 * 23 14 13 36 36 H 1.07995 * 119.44604 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1938 0.0000 4 6 3.5819 1.1966 -0.0058 5 6 4.2826 0.0040 -0.0007 6 6 3.6040 -1.1988 0.0046 7 17 4.4845 -2.6949 0.0116 8 6 2.2065 -1.2081 0.0050 9 6 1.4730 -2.4904 0.0113 10 8 1.1714 -3.0130 1.0666 11 7 1.1380 -3.0808 -1.1530 12 6 0.5334 -4.3367 -1.1490 13 6 0.3135 -4.9943 -2.3493 14 6 -0.2979 -6.2624 -2.3260 15 6 -0.5449 -6.9747 -3.5239 16 1 -1.2934 -7.7530 -3.5447 17 6 0.1812 -6.6703 -4.6819 18 7 1.2472 -5.9173 -4.6061 19 14 -0.3733 -7.3404 -6.3351 20 1 -1.3108 -6.3792 -6.9695 21 1 0.8088 -7.5318 -7.2133 22 1 -1.0588 -8.6427 -6.1367 23 6 -0.6582 -6.8016 -1.0719 24 6 -0.3996 -6.0739 0.0668 25 7 0.1811 -4.8893 0.0024 26 1 -0.3633 0.0043 1.0276 27 1 -0.3633 0.8878 -0.5176 28 1 -0.3633 -0.8921 -0.5102 29 1 1.6577 2.1288 0.0006 30 1 4.1174 2.1345 -0.0096 31 1 5.3626 0.0135 -0.0014 32 1 1.3177 -2.6318 -1.9938 33 1 0.6066 -4.5424 -3.2855 34 1 1.7500 -5.7061 -5.4083 35 1 -1.1290 -7.7714 -1.0073 36 1 -0.6727 -6.4797 1.0296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435478792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:03 Heat of formation + Delta-G solvation = -0.182981 kcal Electronic energy + Delta-G solvation = -23027.056821 eV Core-core repulsion = 19501.057709 eV Total energy + Delta-G solvation = -3525.999112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65813 -40.32132 -39.09927 -37.62569 -36.17810 -35.53317 -33.86172 -32.53366 -32.16122 -30.27110 -28.19414 -27.94736 -25.29573 -23.85187 -23.19109 -22.64034 -21.33346 -19.52202 -19.11646 -17.65385 -17.30742 -17.23038 -17.01491 -16.18189 -16.04220 -15.71658 -15.43223 -15.19643 -14.88625 -14.64959 -14.41779 -14.35877 -14.05929 -13.87405 -13.52654 -13.16003 -12.89777 -12.73876 -12.68015 -12.47666 -12.34962 -12.11863 -12.00803 -11.90432 -11.57019 -11.22217 -11.15666 -9.97964 -9.96371 -9.73904 -9.65683 -8.89909 -8.61672 -6.60143 -0.09881 0.11676 0.68022 0.98860 0.99851 1.40329 1.52151 1.53938 1.73911 2.04839 2.18913 2.49492 2.79846 3.43776 3.61448 3.74196 3.88630 4.16378 4.21066 4.22509 4.39587 4.54825 4.63014 4.72642 4.76046 4.80577 4.90649 5.06278 5.08621 5.10309 5.23868 5.26408 5.36162 5.47154 5.59604 5.74821 5.89994 6.09161 6.39819 6.54174 6.77345 6.81803 7.15983 7.79876 8.24738 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.003832 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.313454 B = 7305.967250 C = 7655.697367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.048 4.048 3 C -0.107 4.107 4 C -0.073 4.073 5 C -0.117 4.117 6 C -0.022 4.022 7 Cl -0.079 7.079 8 C -0.144 4.144 9 C 0.558 3.442 10 O -0.513 6.513 11 N -0.642 5.642 12 C 0.333 3.667 13 C -0.263 4.263 14 C 0.111 3.889 15 C -0.478 4.478 16 H 0.085 0.915 17 C 0.037 3.963 18 N -0.813 5.813 19 Si 0.991 3.009 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.258 1.258 23 C -0.297 4.297 24 C 0.112 3.888 25 N -0.579 5.579 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.041 0.959 29 H 0.174 0.826 30 H 0.181 0.819 31 H 0.160 0.840 32 H 0.418 0.582 33 H 0.135 0.865 34 H 0.292 0.708 35 H 0.117 0.883 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 16.920 1.089 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.049 4.049 3 C -0.125 4.125 4 C -0.091 4.091 5 C -0.136 4.136 6 C -0.050 4.050 7 Cl -0.050 7.050 8 C -0.148 4.148 9 C 0.344 3.656 10 O -0.385 6.385 11 N -0.287 5.287 12 C 0.108 3.892 13 C -0.288 4.288 14 C 0.103 3.897 15 C -0.509 4.509 16 H 0.103 0.897 17 C -0.180 4.180 18 N -0.438 5.438 19 Si 0.811 3.189 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.182 1.182 23 C -0.321 4.321 24 C -0.042 4.042 25 N -0.299 5.299 26 H 0.095 0.905 27 H 0.129 0.871 28 H 0.060 0.940 29 H 0.191 0.809 30 H 0.198 0.802 31 H 0.178 0.822 32 H 0.255 0.745 33 H 0.152 0.848 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.122 17.014 2.541 17.949 hybrid contribution -0.084 -1.421 -1.634 2.167 sum 5.037 15.593 0.907 16.411 Atomic orbital electron populations 1.20932 0.89777 1.03736 1.03335 1.20145 0.96917 0.91110 0.96705 1.21521 0.94813 0.97526 0.98628 1.21764 0.93992 0.98492 0.94871 1.21362 1.01925 0.89592 1.00702 1.21188 0.90477 0.88638 1.04664 1.98411 1.75731 1.34101 1.96795 1.19733 0.92552 0.93469 1.09034 1.18663 0.78673 0.84638 0.83649 1.90844 1.51971 1.64239 1.31484 1.43410 1.58707 1.16797 1.09834 1.18407 0.94063 0.86161 0.90579 1.21794 1.13269 0.97511 0.96234 1.18015 0.87883 0.90581 0.93264 1.19929 1.19187 1.17644 0.94100 0.89672 1.26879 0.92768 0.93609 1.04740 1.69777 1.12467 1.28967 1.32627 0.85063 0.78918 0.79628 0.75286 1.18338 1.19149 1.18164 1.22065 1.14306 1.02426 0.93323 1.22199 0.94270 0.89732 0.97952 1.67331 1.20952 1.14520 1.27127 0.90451 0.87053 0.93982 0.80882 0.80157 0.82221 0.74481 0.84805 0.89678 0.86522 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 9.62 71.24 0.69 -2.08 16 2 C -0.05 -1.15 5.91 -19.61 -0.12 -1.26 16 3 C -0.11 -1.62 9.69 22.23 0.22 -1.41 16 4 C -0.07 -0.97 10.04 22.32 0.22 -0.74 16 5 C -0.12 -2.25 9.82 22.26 0.22 -2.03 16 6 C -0.02 -0.65 6.35 22.60 0.14 -0.50 16 7 Cl -0.08 -2.65 28.04 -2.72 -0.08 -2.72 16 8 C -0.14 -4.59 5.64 -20.07 -0.11 -4.70 16 9 C 0.56 23.28 4.73 86.75 0.41 23.69 16 10 O -0.51 -25.92 15.36 -3.90 -0.06 -25.98 16 11 N -0.64 -27.56 5.38 -311.37 -1.68 -29.24 16 12 C 0.33 17.12 7.41 132.78 0.98 18.11 16 13 C -0.26 -13.99 8.66 22.99 0.20 -13.79 16 14 C 0.11 6.04 5.65 -21.11 -0.12 5.92 16 15 C -0.48 -25.01 9.15 23.52 0.22 -24.79 16 16 H 0.09 4.24 7.88 -2.91 -0.02 4.22 16 17 C 0.04 1.77 5.30 85.29 0.45 2.22 16 18 N -0.81 -40.35 10.54 21.84 0.23 -40.12 16 19 Si 0.99 36.06 29.58 68.60 2.03 38.09 16 20 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 21 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 22 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 23 C -0.30 -15.13 9.90 22.84 0.23 -14.90 16 24 C 0.11 5.61 11.15 84.50 0.94 6.55 16 25 N -0.58 -31.11 7.85 -193.58 -1.52 -32.63 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.11 1.65 8.09 -2.39 -0.02 1.63 16 28 H 0.04 1.22 7.08 -2.39 -0.02 1.20 16 29 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 30 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 31 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.42 15.55 8.68 -92.71 -0.81 14.74 16 33 H 0.13 7.10 5.83 -2.91 -0.02 7.09 16 34 H 0.29 12.95 8.29 -92.71 -0.77 12.18 16 35 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 36 H 0.15 6.41 8.06 -2.91 -0.02 6.39 16 Total: -1.00 -72.64 331.37 3.83 -68.81 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.33 Total: 33.52 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 4.57 Total: -9.73 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -2.97 Total: -101.99 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.06 Total: -25.98 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.08 Total: -2.72 kcal Total: -72.64 3.83 -68.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435478792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.626 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds