Wall clock time and date at job start Tue Mar 31 2020 11:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47213 * 187.72198 * 3 2 1 5 5 C 1.36915 * 120.00127 * 97.11419 * 4 3 2 6 6 H 1.07992 * 120.00696 * 158.92707 * 5 4 3 7 7 C 1.39027 * 119.99497 * 338.93186 * 5 4 3 8 8 N 1.31381 * 120.00241 * 349.34253 * 7 5 4 9 9 Si 1.86797 * 119.99915 * 169.34930 * 7 5 4 10 10 H 1.48497 * 109.47557 * 59.99440 * 9 7 5 11 11 H 1.48493 * 109.47357 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.47006 * 299.99505 * 9 7 5 13 13 C 1.34773 * 120.00320 * 277.11381 * 4 3 2 14 14 O 1.21607 * 120.00277 * 183.74869 * 13 4 3 15 15 C 1.47609 * 120.00189 * 3.74749 * 13 4 3 16 16 C 1.41538 * 126.52751 * 185.25025 * 15 13 4 17 17 C 1.35347 * 105.50290 * 179.97438 * 16 15 13 18 18 N 1.35046 * 107.24206 * 0.25909 * 17 16 15 19 19 C 1.46505 * 124.87787 * 179.70095 * 18 17 16 20 20 C 1.52997 * 109.46867 * 125.00315 * 19 18 17 21 21 C 1.52997 * 109.47113 * 179.97438 * 20 19 18 22 22 F 1.39897 * 109.47191 * 59.99971 * 21 20 19 23 23 F 1.39899 * 109.47492 * 179.97438 * 21 20 19 24 24 F 1.39902 * 109.47442 * 300.00216 * 21 20 19 25 25 N 1.28464 * 110.24136 * 359.55370 * 18 17 16 26 26 H 1.09010 * 109.47153 * 67.72565 * 3 2 1 27 27 H 1.09000 * 109.47414 * 307.72664 * 3 2 1 28 28 H 0.96997 * 119.99893 * 180.02562 * 8 7 5 29 29 H 1.08001 * 127.24684 * 359.94146 * 16 15 13 30 30 H 1.08009 * 126.37680 * 180.02562 * 17 16 15 31 31 H 1.09003 * 109.47098 * 245.00035 * 19 18 17 32 32 H 1.08992 * 109.47128 * 5.00235 * 19 18 17 33 33 H 1.08994 * 109.47529 * 300.00034 * 20 19 18 34 34 H 1.09002 * 109.47306 * 59.99935 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3695 0.1856 5 6 3.4622 1.8026 1.4316 6 1 4.1220 2.6512 1.5361 7 6 2.9849 1.1500 2.5626 8 7 2.0259 0.2589 2.4512 9 14 3.7070 1.5401 4.2406 10 1 3.5040 2.9794 4.5445 11 1 3.0305 0.7162 5.2743 12 1 5.1605 1.2351 4.2370 13 6 3.1837 2.2025 -0.8702 14 8 3.6522 3.3158 -0.7290 15 6 2.7114 1.7636 -2.1981 16 6 2.8314 2.4787 -3.4136 17 6 2.2614 1.6906 -4.3548 18 7 1.8236 0.5754 -3.7314 19 6 1.1375 -0.5384 -4.3909 20 6 1.8827 -1.8420 -4.0973 21 6 1.1658 -3.0053 -4.7855 22 9 1.1385 -2.7847 -6.1667 23 9 1.8475 -4.1973 -4.5176 24 9 -0.1438 -3.0977 -4.3021 25 7 2.0980 0.6303 -2.4776 26 1 2.9715 -0.3887 -0.9511 27 1 2.9717 -0.6280 0.8128 28 1 1.6927 -0.1962 3.2403 29 1 3.2822 3.4493 -3.5593 30 1 2.1700 1.9138 -5.4076 31 1 0.1170 -0.6106 -4.0146 32 1 1.1166 -0.3663 -5.4670 33 1 2.9031 -1.7699 -4.4736 34 1 1.9036 -2.0142 -3.0212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519164411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:43 Heat of formation + Delta-G solvation = -78.796084 kcal Electronic energy + Delta-G solvation = -26489.228244 eV Core-core repulsion = 22009.547059 eV Total energy + Delta-G solvation = -4479.681185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.14324 -48.64383 -48.61449 -43.54020 -40.32258 -37.54957 -36.14934 -35.97893 -33.80854 -31.97625 -31.57708 -29.17776 -27.82572 -26.44657 -24.24583 -22.99016 -22.18795 -20.75725 -19.73167 -19.58284 -19.55278 -18.66064 -18.28143 -17.89637 -17.56541 -16.84768 -16.46945 -15.94654 -15.82669 -15.49791 -15.26244 -15.05319 -14.96551 -14.84691 -14.78018 -14.72394 -14.65278 -14.32526 -13.95425 -13.73725 -13.54018 -13.32418 -13.07625 -12.91263 -12.86451 -12.61235 -12.36695 -12.19515 -12.12027 -11.53334 -11.11916 -10.73351 -10.11654 -10.01100 -9.86859 -8.39115 -6.02883 0.68734 1.28275 1.33450 1.48104 1.52755 1.58379 1.88032 2.00296 2.31499 2.40292 2.58744 2.80379 2.85438 3.02640 3.08468 3.13596 3.48789 3.69837 3.74688 3.87684 4.07335 4.12364 4.25156 4.51623 4.68562 4.70247 4.86872 4.92379 4.95712 5.43612 5.44917 5.93964 6.06275 6.38084 6.96546 7.08261 7.12836 7.30118 7.87061 8.62221 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.004151 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.073069 B = 6743.864713 C = 7823.311532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.284 3.716 3 C 0.233 3.767 4 N -0.438 5.438 5 C -0.338 4.338 6 H 0.090 0.910 7 C 0.002 3.998 8 N -0.897 5.897 9 Si 0.998 3.002 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.258 1.258 13 C 0.519 3.481 14 O -0.611 6.611 15 C -0.020 4.020 16 C -0.208 4.208 17 C 0.016 3.984 18 N -0.287 5.287 19 C 0.119 3.881 20 C -0.179 4.179 21 C 0.467 3.533 22 F -0.178 7.178 23 F -0.185 7.185 24 F -0.190 7.190 25 N -0.286 5.286 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.277 0.723 29 H 0.160 0.840 30 H 0.235 0.765 31 H 0.097 0.903 32 H 0.158 0.842 33 H 0.140 0.860 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.086 -8.419 -17.800 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C -0.034 4.034 3 C 0.106 3.894 4 N -0.157 5.157 5 C -0.466 4.466 6 H 0.108 0.892 7 C -0.199 4.199 8 N -0.535 5.535 9 Si 0.821 3.179 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.182 1.182 13 C 0.308 3.692 14 O -0.495 6.495 15 C -0.179 4.179 16 C -0.236 4.236 17 C -0.127 4.127 18 N -0.074 5.074 19 C -0.001 4.001 20 C -0.218 4.218 21 C 0.413 3.587 22 F -0.160 7.160 23 F -0.167 7.167 24 F -0.172 7.172 25 N -0.122 5.122 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.087 0.913 29 H 0.177 0.823 30 H 0.251 0.749 31 H 0.115 0.885 32 H 0.176 0.824 33 H 0.158 0.842 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.933 -9.130 -17.174 19.473 hybrid contribution 0.598 0.811 0.856 1.322 sum -0.335 -8.319 -16.318 18.319 Atomic orbital electron populations 1.80813 1.14537 1.09673 1.15104 1.29282 0.95329 0.91253 0.87490 1.19033 0.80913 0.85447 1.03964 1.43618 1.54928 1.10088 1.07031 1.19767 1.28331 1.16709 0.81799 0.89247 1.26102 0.94935 0.95909 1.02995 1.69872 1.24775 1.26767 1.32113 0.84912 0.78958 0.77916 0.76104 1.20550 1.20137 1.18225 1.17482 0.83685 0.84450 0.83581 1.90580 1.51612 1.22017 1.85310 1.22027 1.05836 0.94443 0.95639 1.21943 1.08159 1.03054 0.90456 1.23449 1.00747 0.86959 1.01543 1.45659 1.41353 1.16225 1.04201 1.22112 0.95848 0.81593 1.00560 1.23121 1.02871 0.90790 1.04998 1.20233 0.77163 0.84154 0.77176 1.93205 1.96384 1.94574 1.31809 1.93207 1.79717 1.50047 1.93706 1.93219 1.39373 1.96616 1.87944 1.73688 1.17856 1.21605 0.99020 0.86192 0.85805 0.91311 0.82258 0.74874 0.88497 0.82435 0.84231 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.88 18.54 20.01 0.37 -25.51 16 2 C 0.28 13.32 11.99 89.44 1.07 14.39 16 3 C 0.23 10.12 4.75 84.57 0.40 10.52 16 4 N -0.44 -22.14 2.60 -648.96 -1.69 -23.82 16 5 C -0.34 -18.24 9.34 84.09 0.79 -17.45 16 6 H 0.09 5.06 7.35 -2.91 -0.02 5.04 16 7 C 0.00 0.12 5.11 84.95 0.43 0.56 16 8 N -0.90 -45.81 9.08 21.68 0.20 -45.61 16 9 Si 1.00 40.70 29.57 68.60 2.03 42.73 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 12 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 13 C 0.52 26.03 7.56 86.72 0.66 26.69 16 14 O -0.61 -34.47 16.60 -4.05 -0.07 -34.54 16 15 C -0.02 -0.81 6.70 42.43 0.28 -0.52 16 16 C -0.21 -6.39 10.81 22.42 0.24 -6.15 16 17 C 0.02 0.31 11.40 83.53 0.95 1.27 16 18 N -0.29 -6.63 3.41 -347.95 -1.19 -7.82 16 19 C 0.12 1.70 6.15 86.38 0.53 2.23 16 20 C -0.18 -2.50 5.36 30.59 0.16 -2.34 16 21 C 0.47 7.07 3.16 71.98 0.23 7.30 16 22 F -0.18 -2.41 16.80 44.97 0.76 -1.65 16 23 F -0.19 -3.32 17.32 44.97 0.78 -2.54 16 24 F -0.19 -3.64 16.80 44.97 0.76 -2.89 16 25 N -0.29 -9.55 7.18 -48.20 -0.35 -9.90 16 26 H 0.12 4.42 5.94 -2.38 -0.01 4.40 16 27 H 0.12 5.48 6.27 -2.39 -0.01 5.46 16 28 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 29 H 0.16 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.23 1.89 8.06 -2.91 -0.02 1.86 16 31 H 0.10 1.61 7.80 -2.39 -0.02 1.59 16 32 H 0.16 0.87 7.70 -2.39 -0.02 0.86 16 33 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 2.04 8.08 -2.39 -0.02 2.02 16 Total: -1.00 -73.87 317.23 8.53 -65.35 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.18 Total: 9.70 kcal Atomic # 6 Polarization: 30.75 SS G_CDS: 5.75 Total: 36.50 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -2.65 Total: -112.67 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.07 Total: -34.54 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 2.29 Total: -7.08 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -73.87 8.53 -65.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519164411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.448 kcal (2) G-P(sol) polarization free energy of solvation -73.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds