Wall clock time and date at job start Tue Mar 31 2020 11:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33861 * 124.52297 * 2 1 4 4 C 1.37410 * 115.11382 * 179.97438 * 3 2 1 5 5 C 1.50703 * 123.35652 * 179.72873 * 4 3 2 6 6 C 1.36756 * 113.28792 * 0.02562 * 4 3 2 7 7 C 1.46389 * 125.46312 * 179.97438 * 6 4 3 8 8 O 1.21628 * 119.99867 * 359.97438 * 7 6 4 9 9 O 1.34890 * 120.00079 * 179.97438 * 7 6 4 10 10 C 1.45198 * 117.00214 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47449 * 179.97438 * 10 9 7 12 12 C 1.38629 * 119.74992 * 269.72813 * 11 10 9 13 13 C 1.37620 * 120.24970 * 179.71935 * 12 11 10 14 14 C 1.40714 * 119.73850 * 0.57076 * 13 12 11 15 15 C 1.41396 * 120.24100 * 179.68009 * 14 13 12 16 16 H 1.08002 * 120.00082 * 204.40437 * 15 14 13 17 17 C 1.39948 * 119.99959 * 24.40784 * 15 14 13 18 18 N 1.30823 * 120.00014 * 17.84589 * 17 15 14 19 19 Si 1.86801 * 120.00156 * 197.84537 * 17 15 14 20 20 H 1.48501 * 109.46918 * 89.99887 * 19 17 15 21 21 H 1.48498 * 109.47442 * 210.00172 * 19 17 15 22 22 H 1.48507 * 109.46874 * 330.00180 * 19 17 15 23 23 C 1.40715 * 119.51898 * 359.70591 * 14 13 12 24 24 C 1.37623 * 119.74035 * 359.97438 * 23 14 13 25 25 S 1.70615 * 124.51909 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.46878 * 90.00133 * 1 2 3 27 27 H 1.08995 * 109.47010 * 210.00365 * 1 2 3 28 28 H 1.09003 * 109.46688 * 330.00196 * 1 2 3 29 29 H 1.07998 * 122.44126 * 359.97438 * 3 2 1 30 30 H 1.09005 * 109.46810 * 90.02728 * 5 4 3 31 31 H 1.08997 * 109.47075 * 210.02473 * 5 4 3 32 32 H 1.09002 * 109.47287 * 330.03002 * 5 4 3 33 33 H 1.09007 * 109.46885 * 299.99637 * 10 9 7 34 34 H 1.08997 * 109.47532 * 59.99708 * 10 9 7 35 35 H 1.08004 * 119.87698 * 359.97438 * 12 11 10 36 36 H 1.07995 * 120.12745 * 180.27462 * 13 12 11 37 37 H 0.96992 * 120.00008 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.13504 * 179.97438 * 23 14 13 39 39 H 1.08000 * 119.87119 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2656 1.1029 0.0000 4 6 3.6212 0.8782 0.0006 5 6 4.6445 1.9846 -0.0053 6 6 3.9493 -0.4494 0.0005 7 6 5.3105 -0.9879 0.0004 8 8 6.2635 -0.2322 0.0000 9 8 5.5080 -2.3223 0.0008 10 6 6.8842 -2.7851 0.0002 11 6 6.9076 -4.2919 0.0014 12 6 6.9249 -4.9787 1.2055 13 6 6.9404 -6.3547 1.2187 14 6 6.9510 -7.0643 0.0036 15 6 6.9738 -8.4781 0.0047 16 1 7.3683 -9.0125 -0.8469 17 6 6.4852 -9.1849 1.1094 18 7 5.7031 -8.5899 1.9729 19 14 6.9498 -10.9781 1.3508 20 1 8.1923 -11.0629 2.1597 21 1 5.8504 -11.6836 2.0569 22 1 7.1762 -11.6132 0.0277 23 6 6.9391 -6.3567 -1.2126 24 6 6.9169 -4.9807 -1.2017 25 16 2.4738 -1.4058 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.8430 2.0967 -0.0004 30 1 4.8920 2.2560 1.0210 31 1 5.5442 1.6446 -0.5182 32 1 4.2375 2.8533 -0.5228 33 1 7.3918 -2.4142 -0.8903 34 1 7.3930 -2.4135 0.8896 35 1 6.9219 -4.4318 2.1369 36 1 6.9494 -6.8878 2.1579 37 1 5.3642 -9.0799 2.7383 38 1 6.9475 -6.8912 -2.1510 39 1 6.9082 -4.4355 -2.1339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520641610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:57 Heat of formation + Delta-G solvation = -50.903966 kcal Electronic energy + Delta-G solvation = -22367.447372 eV Core-core repulsion = 18944.832883 eV Total energy + Delta-G solvation = -3422.614489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.08885 -38.44444 -37.58807 -35.92352 -33.86608 -32.86741 -30.85667 -29.37620 -28.78495 -27.97205 -26.83247 -23.91621 -22.25025 -21.90096 -21.08268 -20.05021 -18.85079 -18.02499 -17.39162 -16.29520 -16.02579 -15.96581 -15.35016 -14.65385 -14.47906 -14.12720 -13.79772 -13.72526 -13.30031 -13.22614 -13.11675 -12.78482 -12.39894 -12.34339 -12.04291 -12.00150 -11.83666 -11.74645 -11.70870 -11.19920 -11.00568 -10.82494 -10.78848 -10.45690 -10.20748 -10.10384 -9.69571 -9.46563 -9.23212 -8.78259 -8.48902 -7.56446 -7.45393 -6.86721 -4.46685 0.35435 1.41160 1.87678 2.18086 2.43977 2.95511 3.00654 3.03442 3.04129 3.05619 3.40362 3.85545 4.49665 4.52324 4.90815 5.01981 5.11072 5.21608 5.25421 5.44860 5.59366 5.61198 5.62922 5.67591 5.70368 5.83841 5.90371 6.05272 6.24635 6.25441 6.31715 6.33673 6.84107 6.88093 6.97539 7.18484 7.26646 7.51782 7.73976 7.95817 8.01084 8.04850 8.19255 8.53968 8.78497 8.86788 10.07005 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.002786 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.013200 B =10048.381697 C =10982.217077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.204 4.204 3 C -0.161 4.161 4 C -0.015 4.015 5 C -0.107 4.107 6 C -0.269 4.269 7 C 0.533 3.467 8 O -0.510 6.510 9 O -0.347 6.347 10 C 0.138 3.862 11 C -0.236 4.236 12 C -0.075 4.075 13 C -0.170 4.170 14 C 0.119 3.881 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.784 5.784 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.230 4.230 24 C -0.063 4.063 25 S 0.259 5.741 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.283 0.717 38 H 0.095 0.905 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 14.598 -1.485 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.324 4.324 3 C -0.192 4.192 4 C -0.030 4.030 5 C -0.165 4.165 6 C -0.387 4.387 7 C 0.378 3.622 8 O -0.402 6.402 9 O -0.264 6.264 10 C 0.067 3.933 11 C -0.238 4.238 12 C -0.093 4.093 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.485 4.485 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.409 5.409 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.249 4.249 24 C -0.081 4.081 25 S 0.530 5.470 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.160 0.840 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.671 13.115 -1.271 15.774 hybrid contribution 0.418 0.796 0.207 0.922 sum -8.253 13.911 -1.064 16.210 Atomic orbital electron populations 1.20395 0.87356 1.03517 1.03113 1.24480 1.01889 0.99049 1.06992 1.19734 0.91844 0.99607 1.07999 1.19458 0.94926 0.92939 0.95712 1.20756 0.97933 0.94719 1.03076 1.23520 0.95844 0.97061 1.22273 1.19663 0.87502 0.81952 0.73092 1.90784 1.42658 1.59511 1.47207 1.86816 1.34923 1.21680 1.82978 1.21762 0.77532 0.93028 1.01019 1.18671 1.20461 0.90473 0.94156 1.20543 0.99004 0.94729 0.95072 1.21291 1.06768 0.92069 0.98826 1.17688 0.86479 0.93303 0.90945 1.19688 1.35379 0.91498 1.01907 0.90151 1.25974 0.92534 1.01136 0.94770 1.69827 1.21601 1.38822 1.10637 0.86270 0.79165 0.81457 0.79632 1.19151 1.20209 1.18510 1.20960 1.13870 0.92994 0.97121 1.20396 0.98266 0.94276 0.95192 1.83625 0.92531 1.04992 1.65894 0.90324 0.90889 0.90391 0.83978 0.90616 0.88978 0.91575 0.91954 0.91895 0.89322 0.86228 0.90627 0.88712 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.31 36.01 0.37 -0.24 16 2 C -0.20 -2.14 6.28 -35.85 -0.23 -2.36 16 3 C -0.16 -1.71 9.82 -41.42 -0.41 -2.12 16 4 C -0.02 -0.19 5.91 -105.46 -0.62 -0.82 16 5 C -0.11 -1.21 9.55 36.01 0.34 -0.86 16 6 C -0.27 -4.08 6.45 -36.84 -0.24 -4.32 16 7 C 0.53 9.52 7.92 34.01 0.27 9.79 16 8 O -0.51 -9.54 14.04 -19.36 -0.27 -9.81 16 9 O -0.35 -6.80 10.06 -41.01 -0.41 -7.21 16 10 C 0.14 2.71 5.59 36.01 0.20 2.91 16 11 C -0.24 -5.28 5.54 -104.33 -0.58 -5.86 16 12 C -0.07 -1.76 9.67 -39.66 -0.38 -2.14 16 13 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 14 C 0.12 3.11 5.57 -106.83 -0.60 2.52 16 15 C -0.46 -11.81 9.05 -37.74 -0.34 -12.15 16 16 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 17 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 18 N -0.78 -19.79 10.95 55.55 0.61 -19.18 16 19 Si 0.91 18.13 29.60 -169.99 -5.03 13.10 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 24 C -0.06 -1.42 9.67 -39.66 -0.38 -1.80 16 25 S 0.26 3.38 22.87 -107.50 -2.46 0.93 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.23 6.01 -51.93 -0.31 0.92 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 35 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 36 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 37 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 38 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -28.46 351.27 -10.50 -38.96 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.83 Total: 4.31 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -3.40 Total: -26.39 kcal Atomic # 7 Polarization: -19.79 SS G_CDS: 0.61 Total: -19.18 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.68 Total: -17.02 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -2.46 Total: 0.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.46 -10.50 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520641610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.948 kcal (2) G-P(sol) polarization free energy of solvation -28.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds