Wall clock time and date at job start Tue Mar 31 2020 11:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33861 * 124.52297 * 2 1 4 4 C 1.37410 * 115.11382 * 179.97438 * 3 2 1 5 5 C 1.50703 * 123.35652 * 179.72873 * 4 3 2 6 6 C 1.36756 * 113.28792 * 0.02562 * 4 3 2 7 7 C 1.46389 * 125.46312 * 179.97438 * 6 4 3 8 8 O 1.21628 * 119.99867 * 359.97438 * 7 6 4 9 9 O 1.34890 * 120.00079 * 179.97438 * 7 6 4 10 10 C 1.45198 * 117.00214 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47449 * 179.97438 * 10 9 7 12 12 C 1.38629 * 119.74992 * 269.72813 * 11 10 9 13 13 C 1.37620 * 120.24970 * 179.71935 * 12 11 10 14 14 C 1.40714 * 119.73850 * 0.57076 * 13 12 11 15 15 C 1.41396 * 120.24100 * 179.68009 * 14 13 12 16 16 H 1.08002 * 120.00082 * 204.40437 * 15 14 13 17 17 C 1.39948 * 119.99959 * 24.40784 * 15 14 13 18 18 N 1.30823 * 120.00014 * 17.84589 * 17 15 14 19 19 Si 1.86801 * 120.00156 * 197.84537 * 17 15 14 20 20 H 1.48501 * 109.46918 * 89.99887 * 19 17 15 21 21 H 1.48498 * 109.47442 * 210.00172 * 19 17 15 22 22 H 1.48507 * 109.46874 * 330.00180 * 19 17 15 23 23 C 1.40715 * 119.51898 * 359.70591 * 14 13 12 24 24 C 1.37623 * 119.74035 * 359.97438 * 23 14 13 25 25 S 1.70615 * 124.51909 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.46878 * 90.00133 * 1 2 3 27 27 H 1.08995 * 109.47010 * 210.00365 * 1 2 3 28 28 H 1.09003 * 109.46688 * 330.00196 * 1 2 3 29 29 H 1.07998 * 122.44126 * 359.97438 * 3 2 1 30 30 H 1.09005 * 109.46810 * 90.02728 * 5 4 3 31 31 H 1.08997 * 109.47075 * 210.02473 * 5 4 3 32 32 H 1.09002 * 109.47287 * 330.03002 * 5 4 3 33 33 H 1.09007 * 109.46885 * 299.99637 * 10 9 7 34 34 H 1.08997 * 109.47532 * 59.99708 * 10 9 7 35 35 H 1.08004 * 119.87698 * 359.97438 * 12 11 10 36 36 H 1.07995 * 120.12745 * 180.27462 * 13 12 11 37 37 H 0.96992 * 120.00008 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.13504 * 179.97438 * 23 14 13 39 39 H 1.08000 * 119.87119 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2656 1.1029 0.0000 4 6 3.6212 0.8782 0.0006 5 6 4.6445 1.9846 -0.0053 6 6 3.9493 -0.4494 0.0005 7 6 5.3105 -0.9879 0.0004 8 8 6.2635 -0.2322 0.0000 9 8 5.5080 -2.3223 0.0008 10 6 6.8842 -2.7851 0.0002 11 6 6.9076 -4.2919 0.0014 12 6 6.9249 -4.9787 1.2055 13 6 6.9404 -6.3547 1.2187 14 6 6.9510 -7.0643 0.0036 15 6 6.9738 -8.4781 0.0047 16 1 7.3683 -9.0125 -0.8469 17 6 6.4852 -9.1849 1.1094 18 7 5.7031 -8.5899 1.9729 19 14 6.9498 -10.9781 1.3508 20 1 8.1923 -11.0629 2.1597 21 1 5.8504 -11.6836 2.0569 22 1 7.1762 -11.6132 0.0277 23 6 6.9391 -6.3567 -1.2126 24 6 6.9169 -4.9807 -1.2017 25 16 2.4738 -1.4058 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.8430 2.0967 -0.0004 30 1 4.8920 2.2560 1.0210 31 1 5.5442 1.6446 -0.5182 32 1 4.2375 2.8533 -0.5228 33 1 7.3918 -2.4142 -0.8903 34 1 7.3930 -2.4135 0.8896 35 1 6.9219 -4.4318 2.1369 36 1 6.9494 -6.8878 2.1579 37 1 5.3642 -9.0799 2.7383 38 1 6.9475 -6.8912 -2.1510 39 1 6.9082 -4.4355 -2.1339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520641610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:56 Heat of formation + Delta-G solvation = -62.706328 kcal Electronic energy + Delta-G solvation = -22367.959160 eV Core-core repulsion = 18944.832883 eV Total energy + Delta-G solvation = -3423.126278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45723 -39.68086 -39.18913 -37.38509 -35.69862 -33.70990 -32.63929 -31.25797 -29.92446 -29.04432 -28.25441 -25.62022 -23.32758 -22.98402 -22.94194 -21.85508 -20.03062 -19.28792 -19.18496 -17.57992 -17.48282 -17.23301 -16.99488 -16.05070 -15.68768 -15.62812 -15.15420 -15.11874 -14.44162 -14.20816 -14.10655 -13.95569 -13.86548 -13.81351 -13.79221 -13.53269 -12.91218 -12.86724 -12.73038 -12.65117 -12.58045 -12.56598 -12.12078 -11.75199 -11.72084 -11.58740 -11.40490 -11.29898 -11.06312 -9.72925 -9.47130 -9.46366 -9.35820 -8.69896 -6.41264 -0.66490 0.43256 0.70066 0.93558 1.09076 1.17914 1.37924 1.43527 1.52091 1.84275 1.89177 2.18959 2.70792 3.63880 3.72698 3.85130 4.05681 4.08068 4.13209 4.19198 4.44683 4.46891 4.52298 4.53475 4.61157 4.72749 4.75584 4.97871 4.98488 5.03685 5.10527 5.15962 5.22777 5.28665 5.37331 5.38699 5.56465 5.63107 5.86091 6.03798 6.12346 6.29786 6.62416 6.65251 6.86855 6.95231 8.26797 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.002786 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.013200 B =10048.381697 C =10982.217077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.176 4.176 3 C -0.167 4.167 4 C -0.001 4.001 5 C -0.107 4.107 6 C -0.313 4.313 7 C 0.531 3.469 8 O -0.527 6.527 9 O -0.362 6.362 10 C 0.143 3.857 11 C -0.232 4.232 12 C -0.080 4.080 13 C -0.192 4.192 14 C 0.089 3.911 15 C -0.491 4.491 16 H 0.081 0.919 17 C 0.035 3.965 18 N -0.817 5.817 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.257 1.257 23 C -0.244 4.244 24 C -0.064 4.064 25 S 0.221 5.779 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.178 0.822 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.291 0.709 38 H 0.104 0.896 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 16.268 -1.719 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.296 4.296 3 C -0.197 4.197 4 C -0.018 4.018 5 C -0.165 4.165 6 C -0.431 4.431 7 C 0.378 3.622 8 O -0.420 6.420 9 O -0.279 6.279 10 C 0.071 3.929 11 C -0.233 4.233 12 C -0.099 4.099 13 C -0.212 4.212 14 C 0.086 3.914 15 C -0.520 4.520 16 H 0.099 0.901 17 C -0.181 4.181 18 N -0.442 5.442 19 Si 0.806 3.194 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.180 1.180 23 C -0.264 4.264 24 C -0.083 4.083 25 S 0.491 5.509 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.195 0.805 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.314 14.808 -1.512 18.109 hybrid contribution 0.805 0.514 0.256 0.989 sum -9.509 15.321 -1.256 18.076 Atomic orbital electron populations 1.20603 0.84612 1.04937 1.04541 1.24927 1.03369 0.97371 1.03931 1.20047 0.90654 1.01240 1.07722 1.19881 0.96439 0.92290 0.93154 1.20804 0.96840 0.95293 1.03571 1.23437 0.94891 0.98271 1.26496 1.20054 0.88698 0.80971 0.72459 1.90765 1.43491 1.59402 1.48357 1.86769 1.34314 1.23235 1.83599 1.21616 0.78114 0.91151 1.02027 1.18963 1.18548 0.92162 0.93644 1.20766 0.98457 0.94190 0.96441 1.21259 1.08658 0.92999 0.98274 1.18044 0.87416 0.94131 0.91808 1.19940 1.37041 0.91850 1.03159 0.90133 1.26844 0.91741 1.05680 0.93880 1.69874 1.22231 1.40856 1.11243 0.85146 0.79007 0.75573 0.79662 1.18631 1.19122 1.18040 1.21168 1.14254 0.93953 0.96976 1.20700 0.97188 0.93856 0.96519 1.83723 0.92911 1.07063 1.67166 0.88703 0.90425 0.87988 0.80453 0.89932 0.91289 0.88388 0.90694 0.91223 0.87759 0.87686 0.89829 0.87821 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.31 71.24 0.73 -0.19 16 2 C -0.18 -3.19 6.28 24.69 0.16 -3.03 16 3 C -0.17 -2.99 9.82 21.08 0.21 -2.78 16 4 C 0.00 -0.03 5.91 -20.41 -0.12 -0.15 16 5 C -0.11 -2.21 9.55 71.24 0.68 -1.53 16 6 C -0.31 -9.40 6.45 24.05 0.16 -9.24 16 7 C 0.53 19.14 7.92 69.94 0.55 19.69 16 8 O -0.53 -19.84 14.04 19.42 0.27 -19.57 16 9 O -0.36 -14.30 10.06 -58.04 -0.58 -14.89 16 10 C 0.14 5.57 5.59 71.24 0.40 5.96 16 11 C -0.23 -10.41 5.54 -19.67 -0.11 -10.52 16 12 C -0.08 -3.85 9.67 22.22 0.21 -3.63 16 13 C -0.19 -10.28 8.70 22.73 0.20 -10.08 16 14 C 0.09 4.82 5.57 -21.29 -0.12 4.70 16 15 C -0.49 -26.29 9.05 23.46 0.21 -26.08 16 16 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 17 C 0.03 1.73 5.14 85.26 0.44 2.17 16 18 N -0.82 -42.37 10.95 21.83 0.24 -42.14 16 19 Si 0.99 37.48 29.60 68.60 2.03 39.51 16 20 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 21 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 C -0.24 -12.12 9.80 22.73 0.22 -11.89 16 24 C -0.06 -2.91 9.67 22.22 0.21 -2.69 16 25 S 0.22 5.66 22.87 -56.49 -1.29 4.37 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.07 1.79 6.01 -2.39 -0.01 1.78 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 2.71 8.08 -2.38 -0.02 2.69 16 34 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 35 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.11 5.81 6.16 -2.91 -0.02 5.80 16 37 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 38 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 39 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -63.86 351.27 5.77 -58.09 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 1.07 Total: 23.94 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 4.04 Total: -49.32 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.24 Total: -42.14 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.31 Total: -34.45 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Atomic # 16 Polarization: 5.66 SS G_CDS: -1.29 Total: 4.37 kcal Total: -63.86 5.77 -58.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520641610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.618 kcal (2) G-P(sol) polarization free energy of solvation -63.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds