Wall clock time and date at job start Tue Mar 31 2020 11:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47573 * 317.37327 * 3 2 1 5 5 N 1.46497 * 109.47401 * 176.76476 * 4 3 2 6 6 C 1.46499 * 120.00043 * 283.76320 * 5 4 3 7 7 C 1.50695 * 109.46869 * 290.00803 * 6 5 4 8 8 H 1.08006 * 120.00418 * 4.67618 * 7 6 5 9 9 C 1.37884 * 120.00001 * 184.68299 * 7 6 5 10 10 N 1.31513 * 119.99765 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00202 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46969 * 89.99775 * 11 9 7 13 13 H 1.48500 * 109.46764 * 209.99718 * 11 9 7 14 14 H 1.48502 * 109.46838 * 329.99570 * 11 9 7 15 15 S 1.65600 * 119.99871 * 103.76036 * 5 4 3 16 16 O 1.42099 * 104.27896 * 6.65124 * 15 5 4 17 17 O 1.42110 * 104.27514 * 134.50336 * 15 5 4 18 18 C 1.81398 * 104.45057 * 250.57593 * 15 5 4 19 19 C 1.50696 * 112.84968 * 51.51248 * 18 15 5 20 20 O 1.20828 * 120.00209 * 97.76890 * 19 18 15 21 21 O 1.34231 * 119.99827 * 277.76843 * 19 18 15 22 22 C 1.53781 * 113.61451 * 280.20506 * 18 15 5 23 23 C 1.53780 * 87.08163 * 220.02186 * 22 18 15 24 24 C 1.53779 * 87.08362 * 25.43076 * 23 22 18 25 25 H 1.08999 * 109.46907 * 197.37594 * 3 2 1 26 26 H 1.09000 * 109.47666 * 77.37701 * 3 2 1 27 27 H 1.08999 * 109.46804 * 56.76612 * 4 3 2 28 28 H 1.09003 * 109.46925 * 296.76974 * 4 3 2 29 29 H 1.09002 * 109.47300 * 50.00586 * 6 5 4 30 30 H 1.08997 * 109.47007 * 170.00439 * 6 5 4 31 31 H 0.97004 * 120.00436 * 180.02562 * 10 9 7 32 32 H 0.96697 * 116.99753 * 185.07135 * 21 19 18 33 33 H 1.09000 * 113.61571 * 334.56880 * 22 18 15 34 34 H 1.08995 * 113.61640 * 105.46772 * 22 18 15 35 35 H 1.09006 * 113.61317 * 270.88151 * 23 22 18 36 36 H 1.09000 * 113.61888 * 139.98456 * 23 22 18 37 37 H 1.08997 * 113.61587 * 220.02469 * 24 23 22 38 38 H 1.09003 * 113.61131 * 89.11476 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.0605 0.9769 5 7 4.5815 -1.1131 0.9200 6 6 5.2475 -1.7715 -0.2065 7 6 5.0272 -3.2598 -0.1201 8 1 4.3871 -3.6673 0.6484 9 6 5.6430 -4.1014 -1.0222 10 7 6.4222 -3.6052 -1.9583 11 14 5.3706 -5.9463 -0.9147 12 1 4.1969 -6.3224 -1.7432 13 1 6.5765 -6.6546 -1.4140 14 1 5.1217 -6.3283 0.4986 15 16 5.4823 -0.4283 2.1291 16 8 4.5234 -0.0382 3.1026 17 8 6.4713 -1.4048 2.4253 18 6 6.2381 1.0303 1.3599 19 6 5.2334 1.9113 0.6632 20 8 4.7950 2.8879 1.2235 21 8 4.8255 1.6110 -0.5799 22 6 7.4733 0.7048 0.5035 23 6 8.1116 1.9793 1.0803 24 6 7.1867 1.7983 2.2955 25 1 2.9708 0.9816 0.3069 26 1 2.9715 -0.2238 -1.0028 27 1 2.7091 -2.0329 0.7035 28 1 2.8032 -0.8048 1.9885 29 1 4.8338 -1.3968 -1.1428 30 1 6.3161 -1.5597 -0.1710 31 1 6.8552 -4.1972 -2.5931 32 1 4.2387 2.2449 -1.0145 33 1 7.9821 -0.2119 0.8018 34 1 7.2869 0.7566 -0.5691 35 1 7.8981 2.8763 0.4988 36 1 9.1700 1.8691 1.3168 37 1 6.7690 2.7330 2.6693 38 1 7.6172 1.1806 3.0836 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:37 Heat of formation + Delta-G solvation = -102.919023 kcal Electronic energy + Delta-G solvation = -26240.397164 eV Core-core repulsion = 22404.677870 eV Total energy + Delta-G solvation = -3835.719294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89816 -38.22508 -37.19732 -36.80935 -36.16851 -35.79446 -35.57064 -32.77580 -30.73994 -27.67301 -27.04546 -26.00476 -23.99235 -22.99006 -22.10541 -19.80762 -18.88650 -18.08791 -17.92911 -17.17199 -17.08461 -16.43565 -16.34102 -15.63129 -15.30719 -14.76707 -14.62242 -14.53685 -13.99388 -13.64737 -13.48410 -12.80863 -12.77540 -12.61662 -12.54267 -12.47441 -12.30155 -12.04863 -11.84585 -11.78007 -11.59646 -11.56404 -11.30764 -11.19813 -10.89883 -10.81059 -10.69365 -10.61007 -10.49678 -10.17345 -10.07895 -9.81795 -8.55467 -8.24096 -6.15960 -4.19011 0.35152 2.04150 2.61105 2.81201 2.94552 3.05379 3.27011 3.34311 3.39480 3.73383 4.06057 4.09474 4.21211 4.37576 4.50563 4.71797 4.82582 5.12468 5.18127 5.21160 5.27956 5.38719 5.54942 5.58272 5.66533 5.70613 5.73579 5.91476 6.08979 6.22338 6.29743 6.34661 7.05976 7.18487 7.39082 7.70653 7.72118 7.82369 8.10136 8.83580 9.46571 10.92463 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.006828 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.563496 B = 4099.708679 C = 5319.302473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.219 3.781 3 C -0.050 4.050 4 C 0.127 3.873 5 N -0.971 5.971 6 C 0.254 3.746 7 C -0.528 4.528 8 H 0.064 0.936 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.272 1.272 15 S 2.618 3.382 16 O -0.958 6.958 17 O -0.917 6.917 18 C -0.612 4.612 19 C 0.529 3.471 20 O -0.497 6.497 21 O -0.493 6.493 22 C -0.094 4.094 23 C -0.132 4.132 24 C -0.097 4.097 25 H 0.093 0.907 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.414 0.586 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 11.496 2.153 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.099 4.099 3 C -0.092 4.092 4 C -0.001 4.001 5 N -0.810 5.810 6 C 0.133 3.867 7 C -0.567 4.567 8 H 0.082 0.918 9 C -0.138 4.138 10 N -0.532 5.532 11 Si 0.722 3.278 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.197 1.197 15 S 2.705 3.295 16 O -0.948 6.948 17 O -0.907 6.907 18 C -0.696 4.696 19 C 0.369 3.631 20 O -0.384 6.384 21 O -0.304 6.304 22 C -0.132 4.132 23 C -0.170 4.170 24 C -0.136 4.136 25 H 0.111 0.889 26 H 0.144 0.856 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.274 0.726 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.593 11.146 3.205 11.707 hybrid contribution 0.057 -0.193 -0.939 0.960 sum 1.650 10.954 2.266 11.307 Atomic orbital electron populations 1.81178 1.13036 1.08982 1.09276 1.29112 0.95118 0.92896 0.92775 1.19986 0.81367 1.02274 1.05558 1.21099 0.80549 0.99525 0.98971 1.57409 1.13353 1.67886 1.42364 1.19218 0.92328 0.92351 0.82846 1.21415 1.29381 0.91258 1.14676 0.91797 1.24897 0.94771 0.98986 0.95171 1.69894 1.30648 1.35474 1.17180 0.86548 0.77667 0.85041 0.78522 1.20649 1.21126 1.19719 1.05168 0.74792 0.75072 0.74447 1.93540 1.59151 1.84366 1.57775 1.93669 1.62516 1.52350 1.82141 1.31742 1.06503 1.20057 1.11324 1.21103 0.79046 0.82925 0.79992 1.90731 1.54366 1.27213 1.66139 1.84631 1.63699 1.53236 1.28883 1.22800 0.89463 1.00290 1.00629 1.22888 0.99834 0.98130 0.96188 1.22682 0.93734 1.01020 0.96158 0.88882 0.85573 0.88157 0.89038 0.94416 0.93715 0.92629 0.72637 0.86504 0.87975 0.89771 0.89798 0.88374 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.37 18.54 42.15 0.78 -6.59 16 2 C 0.22 3.10 15.43 -20.76 -0.32 2.78 16 3 C -0.05 -0.62 4.83 -29.52 -0.14 -0.76 16 4 C 0.13 1.96 5.55 -4.04 -0.02 1.94 16 5 N -0.97 -17.08 2.58 -115.67 -0.30 -17.38 16 6 C 0.25 5.26 5.27 -5.20 -0.03 5.24 16 7 C -0.53 -13.04 8.87 -34.44 -0.31 -13.34 16 8 H 0.06 1.59 7.66 -52.48 -0.40 1.19 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -23.49 13.29 55.43 0.74 -22.75 16 11 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 S 2.62 45.19 4.76 -107.50 -0.51 44.68 16 16 O -0.96 -17.90 16.20 -57.54 -0.93 -18.83 16 17 O -0.92 -18.63 16.79 -57.54 -0.97 -19.60 16 18 C -0.61 -8.26 1.38 -90.96 -0.13 -8.39 16 19 C 0.53 6.73 5.71 36.00 0.21 6.94 16 20 O -0.50 -7.30 17.01 -18.75 -0.32 -7.62 16 21 O -0.49 -4.87 10.49 -39.26 -0.41 -5.28 16 22 C -0.09 -1.15 6.04 -25.92 -0.16 -1.31 16 23 C -0.13 -1.30 7.80 -25.92 -0.20 -1.50 16 24 C -0.10 -1.10 7.18 -25.92 -0.19 -1.29 16 25 H 0.09 1.02 5.40 -51.93 -0.28 0.74 16 26 H 0.13 1.43 7.37 -51.93 -0.38 1.05 16 27 H 0.10 1.60 7.62 -51.93 -0.40 1.20 16 28 H 0.09 1.40 6.57 -51.93 -0.34 1.05 16 29 H 0.04 0.77 7.42 -51.93 -0.39 0.38 16 30 H 0.05 0.96 6.47 -51.93 -0.34 0.63 16 31 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.41 2.16 9.04 45.56 0.41 2.58 16 33 H 0.12 1.54 7.43 -51.93 -0.39 1.16 16 34 H 0.10 1.21 7.82 -51.93 -0.41 0.80 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.08 7.49 -51.93 -0.39 0.69 16 38 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -32.97 337.04 -6.94 -39.91 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -3.69 Total: 1.22 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.38 Total: -8.15 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 1.22 Total: -46.72 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -2.63 Total: -51.33 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 45.19 SS G_CDS: -0.51 Total: 44.68 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.97 -6.94 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.011 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds