Wall clock time and date at job start Tue Mar 31 2020 11:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47573 * 317.37327 * 3 2 1 5 5 N 1.46497 * 109.47401 * 176.76476 * 4 3 2 6 6 C 1.46499 * 120.00043 * 283.76320 * 5 4 3 7 7 C 1.50695 * 109.46869 * 290.00803 * 6 5 4 8 8 H 1.08006 * 120.00418 * 4.67618 * 7 6 5 9 9 C 1.37884 * 120.00001 * 184.68299 * 7 6 5 10 10 N 1.31513 * 119.99765 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00202 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46969 * 89.99775 * 11 9 7 13 13 H 1.48500 * 109.46764 * 209.99718 * 11 9 7 14 14 H 1.48502 * 109.46838 * 329.99570 * 11 9 7 15 15 S 1.65600 * 119.99871 * 103.76036 * 5 4 3 16 16 O 1.42099 * 104.27896 * 6.65124 * 15 5 4 17 17 O 1.42110 * 104.27514 * 134.50336 * 15 5 4 18 18 C 1.81398 * 104.45057 * 250.57593 * 15 5 4 19 19 C 1.50696 * 112.84968 * 51.51248 * 18 15 5 20 20 O 1.20828 * 120.00209 * 97.76890 * 19 18 15 21 21 O 1.34231 * 119.99827 * 277.76843 * 19 18 15 22 22 C 1.53781 * 113.61451 * 280.20506 * 18 15 5 23 23 C 1.53780 * 87.08163 * 220.02186 * 22 18 15 24 24 C 1.53779 * 87.08362 * 25.43076 * 23 22 18 25 25 H 1.08999 * 109.46907 * 197.37594 * 3 2 1 26 26 H 1.09000 * 109.47666 * 77.37701 * 3 2 1 27 27 H 1.08999 * 109.46804 * 56.76612 * 4 3 2 28 28 H 1.09003 * 109.46925 * 296.76974 * 4 3 2 29 29 H 1.09002 * 109.47300 * 50.00586 * 6 5 4 30 30 H 1.08997 * 109.47007 * 170.00439 * 6 5 4 31 31 H 0.97004 * 120.00436 * 180.02562 * 10 9 7 32 32 H 0.96697 * 116.99753 * 185.07135 * 21 19 18 33 33 H 1.09000 * 113.61571 * 334.56880 * 22 18 15 34 34 H 1.08995 * 113.61640 * 105.46772 * 22 18 15 35 35 H 1.09006 * 113.61317 * 270.88151 * 23 22 18 36 36 H 1.09000 * 113.61888 * 139.98456 * 23 22 18 37 37 H 1.08997 * 113.61587 * 220.02469 * 24 23 22 38 38 H 1.09003 * 113.61131 * 89.11476 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.0605 0.9769 5 7 4.5815 -1.1131 0.9200 6 6 5.2475 -1.7715 -0.2065 7 6 5.0272 -3.2598 -0.1201 8 1 4.3871 -3.6673 0.6484 9 6 5.6430 -4.1014 -1.0222 10 7 6.4222 -3.6052 -1.9583 11 14 5.3706 -5.9463 -0.9147 12 1 4.1969 -6.3224 -1.7432 13 1 6.5765 -6.6546 -1.4140 14 1 5.1217 -6.3283 0.4986 15 16 5.4823 -0.4283 2.1291 16 8 4.5234 -0.0382 3.1026 17 8 6.4713 -1.4048 2.4253 18 6 6.2381 1.0303 1.3599 19 6 5.2334 1.9113 0.6632 20 8 4.7950 2.8879 1.2235 21 8 4.8255 1.6110 -0.5799 22 6 7.4733 0.7048 0.5035 23 6 8.1116 1.9793 1.0803 24 6 7.1867 1.7983 2.2955 25 1 2.9708 0.9816 0.3069 26 1 2.9715 -0.2238 -1.0028 27 1 2.7091 -2.0329 0.7035 28 1 2.8032 -0.8048 1.9885 29 1 4.8338 -1.3968 -1.1428 30 1 6.3161 -1.5597 -0.1710 31 1 6.8552 -4.1972 -2.5931 32 1 4.2387 2.2449 -1.0145 33 1 7.9821 -0.2119 0.8018 34 1 7.2869 0.7566 -0.5691 35 1 7.8981 2.8763 0.4988 36 1 9.1700 1.8691 1.3168 37 1 6.7690 2.7330 2.6693 38 1 7.6172 1.1806 3.0836 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:36 Heat of formation + Delta-G solvation = -126.499863 kcal Electronic energy + Delta-G solvation = -26241.419706 eV Core-core repulsion = 22404.677870 eV Total energy + Delta-G solvation = -3836.741836 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88022 -39.21558 -38.46040 -38.20047 -37.20696 -37.14102 -36.97081 -34.59353 -32.08602 -28.82132 -28.58477 -26.93812 -25.48256 -23.94079 -23.64931 -20.79829 -20.06698 -19.37050 -18.93818 -18.54598 -18.32898 -18.14373 -17.41593 -17.02695 -16.40278 -16.33137 -15.84723 -15.51588 -15.36968 -14.90620 -14.57251 -14.34203 -14.00675 -13.73011 -13.69426 -13.62325 -13.54057 -13.50426 -13.23650 -13.18278 -13.01923 -12.91914 -12.66438 -12.47513 -12.38134 -12.15100 -12.01930 -11.69624 -11.67108 -11.57488 -11.53082 -11.26874 -10.46249 -9.75932 -8.09590 -6.15925 -0.98595 1.01792 1.45094 1.48332 1.49890 1.57396 1.72508 1.79642 1.83724 2.49341 2.58741 2.86551 3.03423 3.10174 3.24243 3.42945 3.64661 3.91536 3.99586 4.11228 4.30125 4.42039 4.50790 4.51794 4.66781 4.81839 4.95643 5.03073 5.04671 5.05775 5.25612 5.42090 5.46768 5.54990 5.78345 5.94903 6.26931 6.56257 6.90834 6.91779 7.51223 8.97340 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.006828 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.563496 B = 4099.708679 C = 5319.302473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.242 3.758 3 C -0.038 4.038 4 C 0.119 3.881 5 N -0.977 5.977 6 C 0.267 3.733 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.022 3.978 10 N -0.915 5.915 11 Si 0.939 3.061 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.279 1.279 15 S 2.618 3.382 16 O -0.979 6.979 17 O -0.959 6.959 18 C -0.603 4.603 19 C 0.537 3.463 20 O -0.514 6.514 21 O -0.486 6.486 22 C -0.100 4.100 23 C -0.115 4.115 24 C -0.104 4.104 25 H 0.113 0.887 26 H 0.144 0.856 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.437 0.563 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 13.005 1.426 13.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.075 4.075 3 C -0.079 4.079 4 C -0.009 4.009 5 N -0.814 5.814 6 C 0.145 3.855 7 C -0.580 4.580 8 H 0.071 0.929 9 C -0.178 4.178 10 N -0.555 5.555 11 Si 0.766 3.234 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.204 1.204 15 S 2.711 3.289 16 O -0.969 6.969 17 O -0.949 6.949 18 C -0.694 4.694 19 C 0.378 3.622 20 O -0.403 6.403 21 O -0.301 6.301 22 C -0.138 4.138 23 C -0.153 4.153 24 C -0.143 4.143 25 H 0.131 0.869 26 H 0.162 0.838 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.301 0.699 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.065 12.608 2.484 13.015 hybrid contribution -0.093 -0.612 -0.692 0.928 sum 1.972 11.997 1.792 12.289 Atomic orbital electron populations 1.81206 1.14273 1.10342 1.10652 1.29259 0.95136 0.91639 0.91516 1.19964 0.80095 1.02225 1.05639 1.21179 0.79578 1.00222 0.99905 1.57200 1.14109 1.68831 1.41281 1.18889 0.92210 0.90426 0.83985 1.21800 1.28649 0.93692 1.13896 0.92889 1.25461 0.95053 1.01900 0.95360 1.69947 1.31480 1.36275 1.17772 0.85850 0.77697 0.81847 0.78009 1.19984 1.20961 1.20384 1.04762 0.74090 0.75725 0.74283 1.93512 1.59856 1.84799 1.58740 1.93621 1.63246 1.54967 1.83039 1.31584 1.07014 1.18202 1.12552 1.20822 0.78560 0.82286 0.80568 1.90739 1.54865 1.27944 1.66785 1.84588 1.63950 1.53949 1.27569 1.22879 0.88924 1.01182 1.00805 1.22866 1.00674 0.97046 0.94690 1.22910 0.93450 1.01040 0.96863 0.86871 0.83828 0.89114 0.89089 0.93565 0.94429 0.92630 0.69921 0.87846 0.87360 0.88388 0.87601 0.87725 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.61 18.54 20.01 0.37 -15.24 16 2 C 0.24 6.49 15.43 89.44 1.38 7.87 16 3 C -0.04 -0.86 4.83 28.79 0.14 -0.72 16 4 C 0.12 3.59 5.55 86.38 0.48 4.07 16 5 N -0.98 -33.84 2.58 -519.86 -1.34 -35.18 16 6 C 0.27 10.95 5.27 85.63 0.45 11.40 16 7 C -0.54 -26.77 8.87 25.60 0.23 -26.55 16 8 H 0.05 2.67 7.66 -2.91 -0.02 2.65 16 9 C 0.02 1.14 5.46 84.66 0.46 1.61 16 10 N -0.91 -47.78 13.29 21.45 0.28 -47.49 16 11 Si 0.94 41.62 29.54 68.60 2.03 43.64 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 15 S 2.62 89.66 4.76 -56.49 -0.27 89.39 16 16 O -0.98 -36.42 16.20 -127.65 -2.07 -38.49 16 17 O -0.96 -39.65 16.79 -127.65 -2.14 -41.79 16 18 C -0.60 -15.24 1.38 -11.01 -0.02 -15.25 16 19 C 0.54 12.24 5.71 71.23 0.41 12.65 16 20 O -0.51 -13.69 17.01 21.96 0.37 -13.31 16 21 O -0.49 -8.03 10.49 -51.43 -0.54 -8.57 16 22 C -0.10 -2.25 6.04 31.12 0.19 -2.06 16 23 C -0.11 -1.89 7.80 31.12 0.24 -1.65 16 24 C -0.10 -2.12 7.18 31.12 0.22 -1.90 16 25 H 0.11 2.17 5.40 -2.39 -0.01 2.16 16 26 H 0.14 2.86 7.37 -2.39 -0.02 2.85 16 27 H 0.09 2.89 7.62 -2.39 -0.02 2.87 16 28 H 0.09 2.76 6.57 -2.39 -0.02 2.74 16 29 H 0.05 1.82 7.42 -2.39 -0.02 1.80 16 30 H 0.04 1.61 6.47 -2.39 -0.02 1.60 16 31 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 32 H 0.44 2.83 9.04 -74.06 -0.67 2.16 16 33 H 0.10 2.66 7.43 -2.39 -0.02 2.64 16 34 H 0.11 2.31 7.82 -2.39 -0.02 2.29 16 35 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 2.04 7.49 -2.39 -0.02 2.02 16 38 H 0.11 2.07 8.10 -2.39 -0.02 2.05 16 Total: -1.00 -70.45 337.04 1.33 -69.12 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.45 Total: 8.44 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 4.19 Total: -10.52 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -0.68 Total: -97.91 kcal Atomic # 8 Polarization: -97.78 SS G_CDS: -4.38 Total: -102.16 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 89.66 SS G_CDS: -0.27 Total: 89.39 kcal Total: -70.45 1.33 -69.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.383 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds